Strain Fitness in Pseudomonas sp. S08-1 around OH686_04540

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04525 and OH686_04530 are separated by 42 nucleotidesOH686_04530 and OH686_04535 are separated by 158 nucleotidesOH686_04535 and OH686_04540 are separated by 49 nucleotidesOH686_04540 and OH686_04545 are separated by 43 nucleotidesOH686_04545 and OH686_04550 are separated by 46 nucleotidesOH686_04550 and OH686_04555 are separated by 156 nucleotides OH686_04525: OH686_04525 - Putative hydrolase, at 942,723 to 943,586 _04525 OH686_04530: OH686_04530 - Transcriptional regulator, AcrR family, at 943,629 to 944,168 _04530 OH686_04535: OH686_04535 - tRNA-Glu, at 944,327 to 944,402 _04535 OH686_04540: OH686_04540 - tRNA-Ala, at 944,452 to 944,527 _04540 OH686_04545: OH686_04545 - tRNA-Glu, at 944,571 to 944,646 _04545 OH686_04550: OH686_04550 - tRNA-Ala, at 944,693 to 944,768 _04550 OH686_04555: OH686_04555 - glutamate--tRNA ligase, at 944,925 to 946,409 _04555 Position (kb) 944 945Strain fitness (log2 ratio) -2 -1 0 1at 943.790 kb on + strand, within OH686_04530at 943.790 kb on + strand, within OH686_04530at 943.790 kb on + strand, within OH686_04530at 943.790 kb on + strand, within OH686_04530at 943.790 kb on + strand, within OH686_04530at 943.790 kb on + strand, within OH686_04530at 943.790 kb on + strand, within OH686_04530at 943.790 kb on + strand, within OH686_04530at 943.790 kb on + strand, within OH686_04530at 943.791 kb on - strand, within OH686_04530at 943.791 kb on - strand, within OH686_04530at 943.791 kb on - strand, within OH686_04530at 943.791 kb on - strand, within OH686_04530at 943.791 kb on - strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.900 kb on + strand, within OH686_04530at 943.901 kb on - strand, within OH686_04530at 943.901 kb on - strand, within OH686_04530at 943.901 kb on - strand, within OH686_04530at 943.901 kb on - strand, within OH686_04530at 943.901 kb on - strand, within OH686_04530at 943.901 kb on - strand, within OH686_04530at 943.901 kb on - strand, within OH686_04530at 943.901 kb on - strand, within OH686_04530at 943.901 kb on - strand, within OH686_04530at 943.901 kb on - strand, within OH686_04530at 943.901 kb on - strand, within OH686_04530at 943.901 kb on - strand, within OH686_04530at 943.901 kb on - strand, within OH686_04530at 943.901 kb on - strand, within OH686_04530at 943.917 kb on + strand, within OH686_04530at 944.035 kb on + strand, within OH686_04530at 944.035 kb on + strand, within OH686_04530at 944.035 kb on + strand, within OH686_04530at 944.035 kb on + strand, within OH686_04530at 944.035 kb on + strand, within OH686_04530at 944.035 kb on + strand, within OH686_04530at 944.035 kb on + strand, within OH686_04530at 944.036 kb on - strand, within OH686_04530at 944.036 kb on - strand, within OH686_04530at 944.036 kb on - strand, within OH686_04530at 944.036 kb on - strand, within OH686_04530at 944.036 kb on - strand, within OH686_04530at 944.036 kb on - strand, within OH686_04530at 944.211 kb on + strandat 944.256 kb on + strandat 944.256 kb on + strandat 944.256 kb on + strandat 944.256 kb on + strandat 944.257 kb on - strandat 944.257 kb on - strandat 944.358 kb on - strand, within OH686_04535at 944.381 kb on + strand, within OH686_04535at 944.381 kb on + strand, within OH686_04535at 944.389 kb on + strand, within OH686_04535at 944.389 kb on + strand, within OH686_04535at 944.461 kb on + strand, within OH686_04540at 944.461 kb on + strand, within OH686_04540at 944.461 kb on + strand, within OH686_04540at 944.462 kb on - strand, within OH686_04540at 944.462 kb on - strand, within OH686_04540at 944.462 kb on - strand, within OH686_04540at 944.462 kb on - strand, within OH686_04540at 944.462 kb on - strand, within OH686_04540at 944.519 kb on + strand, within OH686_04540at 944.519 kb on + strand, within OH686_04540at 944.519 kb on + strand, within OH686_04540at 944.519 kb on + strand, within OH686_04540at 944.519 kb on + strand, within OH686_04540at 944.519 kb on + strand, within OH686_04540at 944.519 kb on + strand, within OH686_04540at 944.519 kb on + strand, within OH686_04540at 944.519 kb on + strand, within OH686_04540at 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.520 kb on - strandat 944.521 kb on + strandat 944.703 kb on - strand, within OH686_04550at 944.703 kb on - strand, within OH686_04550at 944.703 kb on - strand, within OH686_04550at 944.703 kb on - strand, within OH686_04550at 944.865 kb on + strandat 944.866 kb on - strandat 944.866 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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943,790 + OH686_04530 0.30 -0.1
943,790 + OH686_04530 0.30 -0.5
943,790 + OH686_04530 0.30 +0.1
943,790 + OH686_04530 0.30 +0.1
943,790 + OH686_04530 0.30 +0.4
943,790 + OH686_04530 0.30 +0.3
943,790 + OH686_04530 0.30 +0.0
943,790 + OH686_04530 0.30 +0.2
943,790 + OH686_04530 0.30 +1.1
943,791 - OH686_04530 0.30 -0.9
943,791 - OH686_04530 0.30 +0.1
943,791 - OH686_04530 0.30 +1.4
943,791 - OH686_04530 0.30 +0.1
943,791 - OH686_04530 0.30 -0.2
943,900 + OH686_04530 0.50 -0.3
943,900 + OH686_04530 0.50 +0.3
943,900 + OH686_04530 0.50 +0.0
943,900 + OH686_04530 0.50 -0.7
943,900 + OH686_04530 0.50 +0.5
943,900 + OH686_04530 0.50 +0.2
943,900 + OH686_04530 0.50 +0.5
943,900 + OH686_04530 0.50 -0.8
943,900 + OH686_04530 0.50 +1.0
943,900 + OH686_04530 0.50 -0.1
943,900 + OH686_04530 0.50 -0.6
943,900 + OH686_04530 0.50 -0.5
943,900 + OH686_04530 0.50 -1.2
943,900 + OH686_04530 0.50 -0.4
943,900 + OH686_04530 0.50 -0.1
943,900 + OH686_04530 0.50 +0.2
943,900 + OH686_04530 0.50 +0.4
943,900 + OH686_04530 0.50 +0.8
943,900 + OH686_04530 0.50 +0.4
943,901 - OH686_04530 0.50 -0.9
943,901 - OH686_04530 0.50 -0.1
943,901 - OH686_04530 0.50 -0.2
943,901 - OH686_04530 0.50 -0.4
943,901 - OH686_04530 0.50 +0.4
943,901 - OH686_04530 0.50 -0.4
943,901 - OH686_04530 0.50 +0.8
943,901 - OH686_04530 0.50 +0.6
943,901 - OH686_04530 0.50 +0.1
943,901 - OH686_04530 0.50 -0.4
943,901 - OH686_04530 0.50 +0.8
943,901 - OH686_04530 0.50 +0.0
943,901 - OH686_04530 0.50 -0.1
943,901 - OH686_04530 0.50 -0.5
943,917 + OH686_04530 0.53 -0.0
944,035 + OH686_04530 0.75 -0.4
944,035 + OH686_04530 0.75 +0.8
944,035 + OH686_04530 0.75 +0.3
944,035 + OH686_04530 0.75 -0.5
944,035 + OH686_04530 0.75 -1.8
944,035 + OH686_04530 0.75 +0.8
944,035 + OH686_04530 0.75 +0.3
944,036 - OH686_04530 0.75 -1.1
944,036 - OH686_04530 0.75 +0.1
944,036 - OH686_04530 0.75 -0.3
944,036 - OH686_04530 0.75 -1.6
944,036 - OH686_04530 0.75 -0.1
944,036 - OH686_04530 0.75 +0.5
944,211 + +0.2
944,256 + +0.5
944,256 + +0.8
944,256 + -0.4
944,256 + +0.8
944,257 - -0.0
944,257 - +0.2
944,358 - OH686_04535 0.41 -1.2
944,381 + OH686_04535 0.71 -0.2
944,381 + OH686_04535 0.71 -0.4
944,389 + OH686_04535 0.82 +0.3
944,389 + OH686_04535 0.82 +0.8
944,461 + OH686_04540 0.12 +0.2
944,461 + OH686_04540 0.12 +1.1
944,461 + OH686_04540 0.12 +0.9
944,462 - OH686_04540 0.13 -0.0
944,462 - OH686_04540 0.13 +0.4
944,462 - OH686_04540 0.13 -1.3
944,462 - OH686_04540 0.13 +0.2
944,462 - OH686_04540 0.13 +0.4
944,519 + OH686_04540 0.88 -0.6
944,519 + OH686_04540 0.88 +1.3
944,519 + OH686_04540 0.88 +0.2
944,519 + OH686_04540 0.88 +1.3
944,519 + OH686_04540 0.88 +0.8
944,519 + OH686_04540 0.88 +0.6
944,519 + OH686_04540 0.88 -0.8
944,519 + OH686_04540 0.88 -0.2
944,519 + OH686_04540 0.88 -0.1
944,520 - -1.1
944,520 - -1.4
944,520 - +0.2
944,520 - -1.4
944,520 - +0.3
944,520 - -0.1
944,520 - -0.9
944,520 - +0.5
944,520 - -2.1
944,520 - -1.3
944,520 - +1.6
944,520 - -0.6
944,520 - +1.0
944,520 - -0.6
944,520 - +0.4
944,520 - -0.7
944,520 - -0.6
944,520 - -1.4
944,520 - -1.2
944,521 + +0.2
944,703 - OH686_04550 0.13 -0.6
944,703 - OH686_04550 0.13 +0.7
944,703 - OH686_04550 0.13 -0.3
944,703 - OH686_04550 0.13 +0.2
944,865 + +0.9
944,866 - +0.3
944,866 - +0.6

Or see this region's nucleotide sequence