Strain Fitness in Pseudomonas sp. S08-1 around OH686_04520

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04505 and OH686_04510 are separated by 93 nucleotidesOH686_04510 and OH686_04515 overlap by 4 nucleotidesOH686_04515 and OH686_04520 overlap by 4 nucleotidesOH686_04520 and OH686_04525 are separated by 153 nucleotides OH686_04505: OH686_04505 - tRNA-dihydrouridine(16) synthase, at 940,019 to 940,987 _04505 OH686_04510: OH686_04510 - hypothetical protein, at 941,081 to 941,476 _04510 OH686_04515: OH686_04515 - 4-hydroxybenzoyl-CoA thioesterase domain protein, at 941,473 to 941,922 _04515 OH686_04520: OH686_04520 - 4-hydroxy-2-oxoglutarate aldolase or 2-dehydro-3-deoxyphosphogluconate aldolase , at 941,919 to 942,569 _04520 OH686_04525: OH686_04525 - Putative hydrolase, at 942,723 to 943,586 _04525 Position (kb) 941 942 943Strain fitness (log2 ratio) -2 -1 0 1at 940.992 kb on + strandat 940.993 kb on - strandat 941.019 kb on + strandat 941.085 kb on + strandat 941.085 kb on + strandat 941.085 kb on + strandat 941.085 kb on + strandat 941.085 kb on + strandat 941.086 kb on - strandat 941.086 kb on - strandat 941.086 kb on - strandat 941.252 kb on + strand, within OH686_04510at 941.252 kb on + strand, within OH686_04510at 941.252 kb on + strand, within OH686_04510at 941.252 kb on + strand, within OH686_04510at 941.252 kb on + strand, within OH686_04510at 941.252 kb on + strand, within OH686_04510at 941.252 kb on + strand, within OH686_04510at 941.252 kb on + strand, within OH686_04510at 941.252 kb on + strand, within OH686_04510at 941.253 kb on - strand, within OH686_04510at 941.253 kb on - strand, within OH686_04510at 941.253 kb on - strand, within OH686_04510at 941.253 kb on - strand, within OH686_04510at 941.253 kb on - strand, within OH686_04510at 941.253 kb on - strand, within OH686_04510at 941.253 kb on - strand, within OH686_04510at 941.253 kb on - strand, within OH686_04510at 941.253 kb on - strand, within OH686_04510at 941.253 kb on - strand, within OH686_04510at 941.253 kb on - strand, within OH686_04510at 941.268 kb on + strand, within OH686_04510at 941.268 kb on + strand, within OH686_04510at 941.269 kb on - strand, within OH686_04510at 941.269 kb on - strand, within OH686_04510at 941.269 kb on - strand, within OH686_04510at 941.269 kb on - strand, within OH686_04510at 941.357 kb on + strand, within OH686_04510at 941.358 kb on - strand, within OH686_04510at 941.474 kb on + strandat 941.474 kb on + strandat 941.474 kb on + strandat 941.474 kb on + strandat 941.474 kb on + strandat 941.475 kb on - strandat 941.475 kb on - strandat 941.475 kb on - strandat 941.475 kb on - strandat 941.475 kb on - strandat 941.475 kb on - strandat 941.475 kb on - strandat 941.475 kb on - strandat 941.475 kb on - strandat 941.475 kb on - strandat 941.475 kb on - strandat 941.475 kb on - strandat 941.513 kb on + strandat 941.702 kb on + strand, within OH686_04515at 941.717 kb on + strand, within OH686_04515at 941.718 kb on - strand, within OH686_04515at 941.745 kb on + strand, within OH686_04515at 941.746 kb on - strand, within OH686_04515at 941.831 kb on + strand, within OH686_04515at 941.831 kb on + strand, within OH686_04515at 941.831 kb on + strand, within OH686_04515at 941.831 kb on + strand, within OH686_04515at 941.831 kb on + strand, within OH686_04515at 941.831 kb on + strand, within OH686_04515at 941.831 kb on + strand, within OH686_04515at 941.832 kb on - strand, within OH686_04515at 941.832 kb on - strand, within OH686_04515at 941.832 kb on - strand, within OH686_04515at 941.832 kb on - strand, within OH686_04515at 941.832 kb on - strand, within OH686_04515at 941.832 kb on - strand, within OH686_04515at 941.832 kb on - strand, within OH686_04515at 941.832 kb on - strand, within OH686_04515at 941.832 kb on - strand, within OH686_04515at 941.832 kb on - strand, within OH686_04515at 941.832 kb on - strand, within OH686_04515at 941.841 kb on + strand, within OH686_04515at 941.841 kb on + strand, within OH686_04515at 941.841 kb on + strand, within OH686_04515at 941.841 kb on + strand, within OH686_04515at 941.842 kb on - strand, within OH686_04515at 942.159 kb on - strand, within OH686_04520at 942.196 kb on + strand, within OH686_04520at 942.196 kb on + strand, within OH686_04520at 942.197 kb on - strand, within OH686_04520at 942.197 kb on - strand, within OH686_04520at 942.244 kb on + strand, within OH686_04520at 942.245 kb on - strand, within OH686_04520at 942.245 kb on - strand, within OH686_04520at 942.609 kb on + strandat 942.609 kb on + strandat 942.609 kb on + strandat 942.609 kb on + strandat 942.609 kb on + strandat 942.610 kb on - strandat 942.679 kb on + strandat 942.679 kb on + strandat 942.679 kb on + strandat 942.679 kb on + strandat 942.680 kb on - strandat 942.680 kb on - strandat 942.680 kb on - strandat 942.680 kb on - strandat 942.680 kb on - strandat 943.014 kb on + strand, within OH686_04525at 943.014 kb on + strand, within OH686_04525at 943.015 kb on - strand, within OH686_04525at 943.015 kb on - strand, within OH686_04525at 943.023 kb on + strand, within OH686_04525at 943.023 kb on + strand, within OH686_04525at 943.024 kb on - strand, within OH686_04525at 943.114 kb on - strand, within OH686_04525at 943.380 kb on + strand, within OH686_04525at 943.431 kb on - strand, within OH686_04525

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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940,992 + -0.8
940,993 - +0.2
941,019 + -0.5
941,085 + -0.6
941,085 + +0.3
941,085 + -1.1
941,085 + +0.3
941,085 + -0.9
941,086 - +0.1
941,086 - -0.2
941,086 - +0.6
941,252 + OH686_04510 0.43 -2.4
941,252 + OH686_04510 0.43 -0.3
941,252 + OH686_04510 0.43 -0.1
941,252 + OH686_04510 0.43 +0.1
941,252 + OH686_04510 0.43 +0.1
941,252 + OH686_04510 0.43 -0.1
941,252 + OH686_04510 0.43 -0.5
941,252 + OH686_04510 0.43 -0.9
941,252 + OH686_04510 0.43 -0.4
941,253 - OH686_04510 0.43 -0.0
941,253 - OH686_04510 0.43 +0.7
941,253 - OH686_04510 0.43 -0.1
941,253 - OH686_04510 0.43 +0.0
941,253 - OH686_04510 0.43 +0.0
941,253 - OH686_04510 0.43 -0.8
941,253 - OH686_04510 0.43 -0.0
941,253 - OH686_04510 0.43 -0.1
941,253 - OH686_04510 0.43 -0.0
941,253 - OH686_04510 0.43 +0.2
941,253 - OH686_04510 0.43 -0.1
941,268 + OH686_04510 0.47 +0.2
941,268 + OH686_04510 0.47 -0.1
941,269 - OH686_04510 0.47 +0.2
941,269 - OH686_04510 0.47 -0.1
941,269 - OH686_04510 0.47 +1.7
941,269 - OH686_04510 0.47 -1.2
941,357 + OH686_04510 0.70 -0.2
941,358 - OH686_04510 0.70 +0.0
941,474 + +0.1
941,474 + -0.6
941,474 + -0.8
941,474 + -0.5
941,474 + -0.1
941,475 - -1.1
941,475 - +0.2
941,475 - +0.0
941,475 - -0.3
941,475 - -0.3
941,475 - -0.4
941,475 - +0.5
941,475 - -1.6
941,475 - +0.1
941,475 - +0.6
941,475 - -1.5
941,475 - +0.2
941,513 + +0.5
941,702 + OH686_04515 0.51 -0.4
941,717 + OH686_04515 0.54 +1.0
941,718 - OH686_04515 0.54 +0.3
941,745 + OH686_04515 0.60 -0.3
941,746 - OH686_04515 0.61 -1.0
941,831 + OH686_04515 0.80 -0.7
941,831 + OH686_04515 0.80 -0.4
941,831 + OH686_04515 0.80 +0.3
941,831 + OH686_04515 0.80 -0.5
941,831 + OH686_04515 0.80 -0.4
941,831 + OH686_04515 0.80 +0.6
941,831 + OH686_04515 0.80 +0.3
941,832 - OH686_04515 0.80 -0.1
941,832 - OH686_04515 0.80 -1.3
941,832 - OH686_04515 0.80 +0.1
941,832 - OH686_04515 0.80 -0.1
941,832 - OH686_04515 0.80 -0.9
941,832 - OH686_04515 0.80 -0.0
941,832 - OH686_04515 0.80 +0.6
941,832 - OH686_04515 0.80 +1.6
941,832 - OH686_04515 0.80 -1.7
941,832 - OH686_04515 0.80 -0.5
941,832 - OH686_04515 0.80 -0.2
941,841 + OH686_04515 0.82 -1.1
941,841 + OH686_04515 0.82 -0.1
941,841 + OH686_04515 0.82 -0.2
941,841 + OH686_04515 0.82 -2.1
941,842 - OH686_04515 0.82 +0.4
942,159 - OH686_04520 0.37 -0.6
942,196 + OH686_04520 0.43 -0.5
942,196 + OH686_04520 0.43 -2.1
942,197 - OH686_04520 0.43 -0.3
942,197 - OH686_04520 0.43 -1.1
942,244 + OH686_04520 0.50 -1.4
942,245 - OH686_04520 0.50 -1.6
942,245 - OH686_04520 0.50 -0.4
942,609 + +0.2
942,609 + -0.1
942,609 + -0.6
942,609 + +1.0
942,609 + +1.1
942,610 - +1.5
942,679 + +0.9
942,679 + -0.3
942,679 + +0.6
942,679 + +0.9
942,680 - -0.6
942,680 - +1.0
942,680 - -0.4
942,680 - -0.7
942,680 - -0.1
943,014 + OH686_04525 0.34 +0.1
943,014 + OH686_04525 0.34 +0.2
943,015 - OH686_04525 0.34 -0.5
943,015 - OH686_04525 0.34 -0.7
943,023 + OH686_04525 0.35 +0.1
943,023 + OH686_04525 0.35 +0.4
943,024 - OH686_04525 0.35 +0.8
943,114 - OH686_04525 0.45 +0.7
943,380 + OH686_04525 0.76 +0.9
943,431 - OH686_04525 0.82 -1.1

Or see this region's nucleotide sequence