Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_04355 and OH686_04360 overlap by 4 nucleotides OH686_04360 and OH686_04365 overlap by 4 nucleotides OH686_04365 and OH686_04370 overlap by 4 nucleotides OH686_04370 and OH686_04375 overlap by 4 nucleotides OH686_04375 and OH686_04380 are separated by 6 nucleotides
OH686_04355: OH686_04355 - type II secretion system protein L, at 902,396 to 903,541
_04355
OH686_04360: OH686_04360 - General secretion pathway protein K, at 903,538 to 904,491
_04360
OH686_04365: OH686_04365 - type II secretion system protein J, at 904,488 to 905,201
_04365
OH686_04370: OH686_04370 - type II secretion system protein I, at 905,198 to 905,587
_04370
OH686_04375: OH686_04375 - type II secretion system protein H, at 905,584 to 906,120
_04375
OH686_04380: OH686_04380 - type II secretion system protein G, at 906,127 to 906,552
_04380
Position (kb) 904
905
906 Strain fitness (log2 ratio) -1
0
1 at 903.621 kb on + strand at 903.621 kb on + strand at 903.621 kb on + strand at 903.621 kb on + strand at 903.621 kb on + strand at 903.621 kb on + strand at 903.621 kb on + strand at 903.622 kb on - strand at 903.622 kb on - strand at 903.622 kb on - strand at 903.635 kb on + strand, within OH686_04360 at 903.635 kb on + strand, within OH686_04360 at 903.635 kb on + strand, within OH686_04360 at 903.635 kb on + strand, within OH686_04360 at 903.635 kb on + strand, within OH686_04360 at 903.636 kb on - strand, within OH686_04360 at 903.636 kb on - strand, within OH686_04360 at 903.636 kb on - strand, within OH686_04360 at 903.646 kb on + strand, within OH686_04360 at 903.647 kb on - strand, within OH686_04360 at 903.647 kb on - strand, within OH686_04360 at 903.692 kb on + strand, within OH686_04360 at 903.692 kb on + strand, within OH686_04360 at 903.693 kb on - strand, within OH686_04360 at 903.693 kb on - strand, within OH686_04360 at 903.731 kb on + strand, within OH686_04360 at 903.732 kb on - strand, within OH686_04360 at 903.777 kb on + strand, within OH686_04360 at 903.867 kb on + strand, within OH686_04360 at 903.867 kb on + strand, within OH686_04360 at 903.868 kb on - strand, within OH686_04360 at 903.920 kb on + strand, within OH686_04360 at 904.013 kb on + strand, within OH686_04360 at 904.014 kb on - strand, within OH686_04360 at 904.014 kb on - strand, within OH686_04360 at 904.014 kb on - strand, within OH686_04360 at 904.088 kb on + strand, within OH686_04360 at 904.089 kb on - strand, within OH686_04360 at 904.089 kb on - strand, within OH686_04360 at 904.196 kb on - strand, within OH686_04360 at 904.196 kb on - strand, within OH686_04360 at 904.346 kb on + strand, within OH686_04360 at 904.346 kb on + strand, within OH686_04360 at 904.346 kb on + strand, within OH686_04360 at 904.346 kb on + strand, within OH686_04360 at 904.346 kb on + strand, within OH686_04360 at 904.346 kb on + strand, within OH686_04360 at 904.347 kb on - strand, within OH686_04360 at 904.347 kb on - strand, within OH686_04360 at 904.349 kb on + strand, within OH686_04360 at 904.349 kb on + strand, within OH686_04360 at 904.349 kb on + strand, within OH686_04360 at 904.350 kb on - strand, within OH686_04360 at 904.350 kb on - strand, within OH686_04360 at 904.350 kb on - strand, within OH686_04360 at 904.350 kb on - strand, within OH686_04360 at 904.350 kb on - strand, within OH686_04360 at 904.350 kb on - strand, within OH686_04360 at 904.350 kb on - strand, within OH686_04360 at 904.636 kb on + strand, within OH686_04365 at 904.636 kb on + strand, within OH686_04365 at 904.637 kb on - strand, within OH686_04365 at 904.637 kb on - strand, within OH686_04365 at 904.639 kb on + strand, within OH686_04365 at 904.640 kb on - strand, within OH686_04365 at 904.640 kb on - strand, within OH686_04365 at 904.835 kb on - strand, within OH686_04365 at 905.125 kb on + strand, within OH686_04365 at 905.125 kb on + strand, within OH686_04365 at 905.125 kb on + strand, within OH686_04365 at 905.125 kb on + strand, within OH686_04365 at 905.126 kb on - strand, within OH686_04365 at 905.126 kb on - strand, within OH686_04365 at 905.126 kb on - strand, within OH686_04365 at 905.364 kb on + strand, within OH686_04370 at 905.364 kb on + strand, within OH686_04370 at 905.364 kb on + strand, within OH686_04370 at 905.365 kb on - strand, within OH686_04370 at 905.365 kb on - strand, within OH686_04370 at 905.811 kb on + strand, within OH686_04375 at 905.886 kb on - strand, within OH686_04375 at 905.900 kb on + strand, within OH686_04375 at 905.900 kb on + strand, within OH686_04375 at 905.901 kb on - strand, within OH686_04375 at 905.927 kb on + strand, within OH686_04375 at 905.927 kb on + strand, within OH686_04375 at 905.971 kb on + strand, within OH686_04375 at 905.971 kb on + strand, within OH686_04375 at 905.971 kb on + strand, within OH686_04375 at 905.971 kb on + strand, within OH686_04375 at 905.972 kb on - strand, within OH686_04375 at 905.972 kb on - strand, within OH686_04375
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 903,621 + -0.6 903,621 + +0.2 903,621 + -0.0 903,621 + -0.4 903,621 + -0.2 903,621 + +0.3 903,621 + +0.4 903,622 - -0.3 903,622 - -0.5 903,622 - +0.2 903,635 + OH686_04360 0.10 -0.1 903,635 + OH686_04360 0.10 -0.6 903,635 + OH686_04360 0.10 -1.1 903,635 + OH686_04360 0.10 +0.2 903,635 + OH686_04360 0.10 -1.1 903,636 - OH686_04360 0.10 +0.2 903,636 - OH686_04360 0.10 -0.1 903,636 - OH686_04360 0.10 +1.0 903,646 + OH686_04360 0.11 +0.0 903,647 - OH686_04360 0.11 -0.6 903,647 - OH686_04360 0.11 -0.6 903,692 + OH686_04360 0.16 +0.1 903,692 + OH686_04360 0.16 -1.4 903,693 - OH686_04360 0.16 -0.2 903,693 - OH686_04360 0.16 -0.4 903,731 + OH686_04360 0.20 +0.5 903,732 - OH686_04360 0.20 +0.8 903,777 + OH686_04360 0.25 -0.1 903,867 + OH686_04360 0.34 +0.4 903,867 + OH686_04360 0.34 -0.2 903,868 - OH686_04360 0.35 +0.0 903,920 + OH686_04360 0.40 -0.1 904,013 + OH686_04360 0.50 -0.3 904,014 - OH686_04360 0.50 -0.2 904,014 - OH686_04360 0.50 +0.3 904,014 - OH686_04360 0.50 +0.2 904,088 + OH686_04360 0.58 -1.1 904,089 - OH686_04360 0.58 +0.2 904,089 - OH686_04360 0.58 +0.4 904,196 - OH686_04360 0.69 +0.6 904,196 - OH686_04360 0.69 -0.2 904,346 + OH686_04360 0.85 -0.1 904,346 + OH686_04360 0.85 +0.2 904,346 + OH686_04360 0.85 -0.8 904,346 + OH686_04360 0.85 -0.0 904,346 + OH686_04360 0.85 +1.2 904,346 + OH686_04360 0.85 -0.9 904,347 - OH686_04360 0.85 +1.0 904,347 - OH686_04360 0.85 +0.1 904,349 + OH686_04360 0.85 -0.1 904,349 + OH686_04360 0.85 +0.3 904,349 + OH686_04360 0.85 +0.4 904,350 - OH686_04360 0.85 -0.1 904,350 - OH686_04360 0.85 -0.8 904,350 - OH686_04360 0.85 +0.8 904,350 - OH686_04360 0.85 -0.1 904,350 - OH686_04360 0.85 -0.1 904,350 - OH686_04360 0.85 +0.9 904,350 - OH686_04360 0.85 -0.2 904,636 + OH686_04365 0.21 +0.2 904,636 + OH686_04365 0.21 -0.9 904,637 - OH686_04365 0.21 +1.1 904,637 - OH686_04365 0.21 +0.3 904,639 + OH686_04365 0.21 -1.2 904,640 - OH686_04365 0.21 +0.7 904,640 - OH686_04365 0.21 +0.4 904,835 - OH686_04365 0.49 -0.4 905,125 + OH686_04365 0.89 +0.9 905,125 + OH686_04365 0.89 -0.5 905,125 + OH686_04365 0.89 +0.8 905,125 + OH686_04365 0.89 +0.9 905,126 - OH686_04365 0.89 -0.1 905,126 - OH686_04365 0.89 -0.2 905,126 - OH686_04365 0.89 +0.4 905,364 + OH686_04370 0.43 +0.7 905,364 + OH686_04370 0.43 +0.2 905,364 + OH686_04370 0.43 +0.1 905,365 - OH686_04370 0.43 -1.1 905,365 - OH686_04370 0.43 +0.2 905,811 + OH686_04375 0.42 -1.2 905,886 - OH686_04375 0.56 -0.0 905,900 + OH686_04375 0.59 -0.6 905,900 + OH686_04375 0.59 +0.1 905,901 - OH686_04375 0.59 -0.3 905,927 + OH686_04375 0.64 +0.1 905,927 + OH686_04375 0.64 -0.1 905,971 + OH686_04375 0.72 -0.8 905,971 + OH686_04375 0.72 +0.8 905,971 + OH686_04375 0.72 +0.3 905,971 + OH686_04375 0.72 -0.4 905,972 - OH686_04375 0.72 -0.3 905,972 - OH686_04375 0.72 +0.1
Or see this region's nucleotide sequence