Strain Fitness in Pseudomonas sp. S08-1 around OH686_03935

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03930 and OH686_03935 are separated by 119 nucleotidesOH686_03935 and OH686_03940 are separated by 124 nucleotides OH686_03930: OH686_03930 - argininosuccinate synthase, at 810,341 to 811,558 _03930 OH686_03935: OH686_03935 - Sodium-type flagellar protein motY precursor, at 811,678 to 812,643 _03935 OH686_03940: OH686_03940 - dihydroorotase, homodimeric type, at 812,768 to 813,814 _03940 Position (kb) 811 812 813Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 810.732 kb on + strand, within OH686_03930at 810.732 kb on + strand, within OH686_03930at 810.733 kb on - strand, within OH686_03930at 810.751 kb on + strand, within OH686_03930at 810.752 kb on - strand, within OH686_03930at 810.752 kb on - strand, within OH686_03930at 810.752 kb on - strand, within OH686_03930at 810.759 kb on + strand, within OH686_03930at 810.759 kb on + strand, within OH686_03930at 810.760 kb on - strand, within OH686_03930at 810.882 kb on + strand, within OH686_03930at 810.883 kb on - strand, within OH686_03930at 810.883 kb on - strand, within OH686_03930at 810.883 kb on - strand, within OH686_03930at 810.897 kb on + strand, within OH686_03930at 810.897 kb on + strand, within OH686_03930at 810.897 kb on + strand, within OH686_03930at 810.897 kb on + strand, within OH686_03930at 810.897 kb on + strand, within OH686_03930at 810.897 kb on + strand, within OH686_03930at 810.897 kb on + strand, within OH686_03930at 810.897 kb on + strand, within OH686_03930at 810.897 kb on + strand, within OH686_03930at 810.898 kb on - strand, within OH686_03930at 810.898 kb on - strand, within OH686_03930at 810.898 kb on - strand, within OH686_03930at 810.898 kb on - strand, within OH686_03930at 810.993 kb on + strand, within OH686_03930at 810.993 kb on + strand, within OH686_03930at 810.993 kb on + strand, within OH686_03930at 810.994 kb on - strand, within OH686_03930at 810.994 kb on - strand, within OH686_03930at 810.994 kb on - strand, within OH686_03930at 810.994 kb on - strand, within OH686_03930at 811.027 kb on - strand, within OH686_03930at 811.080 kb on + strand, within OH686_03930at 811.081 kb on - strand, within OH686_03930at 811.139 kb on + strand, within OH686_03930at 811.139 kb on + strand, within OH686_03930at 811.139 kb on + strand, within OH686_03930at 811.140 kb on - strand, within OH686_03930at 811.286 kb on - strand, within OH686_03930at 811.296 kb on + strand, within OH686_03930at 811.296 kb on + strand, within OH686_03930at 811.296 kb on + strand, within OH686_03930at 811.297 kb on - strand, within OH686_03930at 811.308 kb on + strand, within OH686_03930at 811.308 kb on + strand, within OH686_03930at 811.308 kb on + strand, within OH686_03930at 811.308 kb on + strand, within OH686_03930at 811.308 kb on + strand, within OH686_03930at 811.308 kb on + strand, within OH686_03930at 811.308 kb on + strand, within OH686_03930at 811.308 kb on + strand, within OH686_03930at 811.309 kb on - strand, within OH686_03930at 811.309 kb on - strand, within OH686_03930at 811.309 kb on - strand, within OH686_03930at 811.309 kb on - strand, within OH686_03930at 811.309 kb on - strand, within OH686_03930at 811.309 kb on - strand, within OH686_03930at 811.309 kb on - strand, within OH686_03930at 811.309 kb on - strand, within OH686_03930at 811.309 kb on - strand, within OH686_03930at 811.377 kb on + strand, within OH686_03930at 811.474 kb on + strandat 811.474 kb on + strandat 811.474 kb on + strandat 811.474 kb on + strandat 811.474 kb on + strandat 811.475 kb on - strandat 811.475 kb on - strandat 811.475 kb on - strandat 811.476 kb on + strandat 811.476 kb on + strandat 811.476 kb on + strandat 811.476 kb on + strandat 811.476 kb on + strandat 811.476 kb on + strandat 811.476 kb on + strandat 811.476 kb on + strandat 811.476 kb on + strandat 811.476 kb on + strandat 811.476 kb on + strandat 811.476 kb on + strandat 811.476 kb on + strandat 811.476 kb on + strandat 811.476 kb on + strandat 811.477 kb on - strandat 811.477 kb on - strandat 811.477 kb on - strandat 811.477 kb on - strandat 811.477 kb on - strandat 811.477 kb on - strandat 811.477 kb on - strandat 811.477 kb on - strandat 811.477 kb on - strandat 811.477 kb on - strandat 811.477 kb on - strandat 811.477 kb on - strandat 811.477 kb on - strandat 811.527 kb on + strandat 811.527 kb on + strandat 811.528 kb on - strandat 811.528 kb on - strandat 811.538 kb on + strandat 811.538 kb on + strandat 811.538 kb on + strandat 811.538 kb on + strandat 811.539 kb on - strandat 811.539 kb on - strandat 811.539 kb on - strandat 811.539 kb on - strandat 811.546 kb on + strandat 811.546 kb on + strandat 811.547 kb on - strandat 811.581 kb on + strandat 811.582 kb on - strandat 811.582 kb on - strandat 811.600 kb on + strandat 811.621 kb on + strandat 811.621 kb on + strandat 811.641 kb on + strandat 811.642 kb on - strandat 811.642 kb on - strandat 811.642 kb on - strandat 811.642 kb on - strandat 811.661 kb on + strandat 811.857 kb on - strand, within OH686_03935at 811.917 kb on - strand, within OH686_03935at 812.162 kb on + strand, within OH686_03935at 812.162 kb on + strand, within OH686_03935at 812.162 kb on + strand, within OH686_03935at 812.162 kb on + strand, within OH686_03935at 812.162 kb on + strand, within OH686_03935at 812.163 kb on - strand, within OH686_03935at 812.163 kb on - strand, within OH686_03935at 812.163 kb on - strand, within OH686_03935at 812.163 kb on - strand, within OH686_03935at 812.163 kb on - strand, within OH686_03935at 812.171 kb on + strand, within OH686_03935at 812.171 kb on + strand, within OH686_03935at 812.171 kb on + strand, within OH686_03935at 812.171 kb on + strand, within OH686_03935at 812.171 kb on + strand, within OH686_03935at 812.171 kb on + strand, within OH686_03935at 812.172 kb on - strand, within OH686_03935at 812.172 kb on - strand, within OH686_03935at 812.278 kb on + strand, within OH686_03935at 812.278 kb on + strand, within OH686_03935at 812.279 kb on - strand, within OH686_03935at 812.304 kb on + strand, within OH686_03935at 812.304 kb on + strand, within OH686_03935at 812.304 kb on + strand, within OH686_03935at 812.304 kb on + strand, within OH686_03935at 812.305 kb on - strand, within OH686_03935at 812.305 kb on - strand, within OH686_03935at 812.305 kb on - strand, within OH686_03935at 812.314 kb on + strand, within OH686_03935at 812.314 kb on + strand, within OH686_03935at 812.314 kb on + strand, within OH686_03935at 812.314 kb on + strand, within OH686_03935at 812.314 kb on + strand, within OH686_03935at 812.315 kb on - strand, within OH686_03935at 812.315 kb on - strand, within OH686_03935at 812.315 kb on - strand, within OH686_03935at 812.315 kb on - strand, within OH686_03935at 812.315 kb on - strand, within OH686_03935at 812.315 kb on - strand, within OH686_03935at 812.663 kb on + strandat 812.663 kb on + strandat 812.663 kb on + strandat 812.663 kb on + strandat 812.663 kb on + strandat 812.664 kb on - strandat 812.707 kb on + strandat 812.708 kb on - strandat 812.708 kb on - strandat 812.708 kb on - strandat 812.732 kb on + strandat 812.732 kb on + strandat 812.733 kb on - strandat 812.733 kb on - strandat 812.750 kb on + strandat 812.751 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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810,732 + OH686_03930 0.32 -2.3
810,732 + OH686_03930 0.32 -0.8
810,733 - OH686_03930 0.32 -2.5
810,751 + OH686_03930 0.34 -1.9
810,752 - OH686_03930 0.34 -1.8
810,752 - OH686_03930 0.34 -3.3
810,752 - OH686_03930 0.34 -1.7
810,759 + OH686_03930 0.34 -2.4
810,759 + OH686_03930 0.34 -2.0
810,760 - OH686_03930 0.34 -0.6
810,882 + OH686_03930 0.44 -1.9
810,883 - OH686_03930 0.44 -4.1
810,883 - OH686_03930 0.44 -2.5
810,883 - OH686_03930 0.44 -1.2
810,897 + OH686_03930 0.46 -2.8
810,897 + OH686_03930 0.46 -1.0
810,897 + OH686_03930 0.46 -3.3
810,897 + OH686_03930 0.46 -3.2
810,897 + OH686_03930 0.46 -2.6
810,897 + OH686_03930 0.46 -3.1
810,897 + OH686_03930 0.46 -3.0
810,897 + OH686_03930 0.46 -0.2
810,897 + OH686_03930 0.46 -3.1
810,898 - OH686_03930 0.46 -3.9
810,898 - OH686_03930 0.46 -1.8
810,898 - OH686_03930 0.46 -2.4
810,898 - OH686_03930 0.46 -3.9
810,993 + OH686_03930 0.54 -2.3
810,993 + OH686_03930 0.54 -1.7
810,993 + OH686_03930 0.54 -4.7
810,994 - OH686_03930 0.54 -2.4
810,994 - OH686_03930 0.54 -5.0
810,994 - OH686_03930 0.54 -3.7
810,994 - OH686_03930 0.54 -4.2
811,027 - OH686_03930 0.56 -2.4
811,080 + OH686_03930 0.61 -3.2
811,081 - OH686_03930 0.61 -3.9
811,139 + OH686_03930 0.66 -2.9
811,139 + OH686_03930 0.66 +0.2
811,139 + OH686_03930 0.66 -3.5
811,140 - OH686_03930 0.66 -4.5
811,286 - OH686_03930 0.78 -2.4
811,296 + OH686_03930 0.78 -3.8
811,296 + OH686_03930 0.78 -3.5
811,296 + OH686_03930 0.78 -0.6
811,297 - OH686_03930 0.78 -4.1
811,308 + OH686_03930 0.79 -1.4
811,308 + OH686_03930 0.79 -2.1
811,308 + OH686_03930 0.79 -2.6
811,308 + OH686_03930 0.79 -2.4
811,308 + OH686_03930 0.79 -1.0
811,308 + OH686_03930 0.79 -1.2
811,308 + OH686_03930 0.79 -2.7
811,308 + OH686_03930 0.79 -2.5
811,309 - OH686_03930 0.79 -0.6
811,309 - OH686_03930 0.79 -0.2
811,309 - OH686_03930 0.79 -1.0
811,309 - OH686_03930 0.79 -1.9
811,309 - OH686_03930 0.79 -2.9
811,309 - OH686_03930 0.79 -1.7
811,309 - OH686_03930 0.79 -2.8
811,309 - OH686_03930 0.79 -1.4
811,309 - OH686_03930 0.79 -1.8
811,377 + OH686_03930 0.85 -1.2
811,474 + -1.8
811,474 + -3.4
811,474 + -2.3
811,474 + -1.8
811,474 + -3.3
811,475 - -2.8
811,475 - -3.0
811,475 - -1.6
811,476 + -1.8
811,476 + -1.2
811,476 + -3.0
811,476 + -3.5
811,476 + -1.9
811,476 + -1.6
811,476 + -3.6
811,476 + -2.0
811,476 + -4.1
811,476 + -0.2
811,476 + -2.5
811,476 + -1.4
811,476 + -0.6
811,476 + -1.6
811,476 + -4.3
811,477 - -3.2
811,477 - -2.6
811,477 - -1.7
811,477 - -1.8
811,477 - -4.5
811,477 - -2.3
811,477 - -2.6
811,477 - -4.8
811,477 - -2.2
811,477 - -3.2
811,477 - -2.2
811,477 - -2.2
811,477 - -0.6
811,527 + -2.8
811,527 + -2.9
811,528 - -3.9
811,528 - -1.4
811,538 + -2.6
811,538 + -2.2
811,538 + -3.5
811,538 + -1.4
811,539 - -0.6
811,539 - -4.1
811,539 - -2.9
811,539 - -2.2
811,546 + -2.8
811,546 + -1.8
811,547 - -3.1
811,581 + -2.7
811,582 - -0.0
811,582 - -0.3
811,600 + -0.7
811,621 + -0.1
811,621 + -0.3
811,641 + -0.0
811,642 - +1.2
811,642 - -0.0
811,642 - +0.1
811,642 - -0.3
811,661 + -0.8
811,857 - OH686_03935 0.19 +0.3
811,917 - OH686_03935 0.25 +0.4
812,162 + OH686_03935 0.50 +2.1
812,162 + OH686_03935 0.50 -1.0
812,162 + OH686_03935 0.50 +0.3
812,162 + OH686_03935 0.50 -0.0
812,162 + OH686_03935 0.50 +1.4
812,163 - OH686_03935 0.50 +0.7
812,163 - OH686_03935 0.50 -0.7
812,163 - OH686_03935 0.50 +1.0
812,163 - OH686_03935 0.50 +0.5
812,163 - OH686_03935 0.50 +0.4
812,171 + OH686_03935 0.51 +0.1
812,171 + OH686_03935 0.51 -0.1
812,171 + OH686_03935 0.51 +0.2
812,171 + OH686_03935 0.51 -0.3
812,171 + OH686_03935 0.51 +0.6
812,171 + OH686_03935 0.51 +0.4
812,172 - OH686_03935 0.51 -0.1
812,172 - OH686_03935 0.51 +1.0
812,278 + OH686_03935 0.62 +0.3
812,278 + OH686_03935 0.62 +0.5
812,279 - OH686_03935 0.62 +0.8
812,304 + OH686_03935 0.65 -0.3
812,304 + OH686_03935 0.65 -0.3
812,304 + OH686_03935 0.65 -0.1
812,304 + OH686_03935 0.65 +0.2
812,305 - OH686_03935 0.65 -0.1
812,305 - OH686_03935 0.65 -0.3
812,305 - OH686_03935 0.65 +0.2
812,314 + OH686_03935 0.66 +0.3
812,314 + OH686_03935 0.66 +0.1
812,314 + OH686_03935 0.66 +0.1
812,314 + OH686_03935 0.66 +0.5
812,314 + OH686_03935 0.66 +0.3
812,315 - OH686_03935 0.66 +0.2
812,315 - OH686_03935 0.66 -0.2
812,315 - OH686_03935 0.66 -0.1
812,315 - OH686_03935 0.66 +0.2
812,315 - OH686_03935 0.66 +0.8
812,315 - OH686_03935 0.66 +0.5
812,663 + -0.8
812,663 + -0.7
812,663 + -0.7
812,663 + +0.4
812,663 + +0.0
812,664 - +0.1
812,707 + +0.1
812,708 - -0.0
812,708 - -0.1
812,708 - -1.0
812,732 + +0.3
812,732 + -0.5
812,733 - +0.6
812,733 - +0.9
812,750 + -0.0
812,751 - +1.3

Or see this region's nucleotide sequence