Strain Fitness in Pseudomonas sp. S08-1 around OH686_03385

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_03375 and OH686_03380 are separated by 16 nucleotidesOH686_03380 and OH686_03385 are separated by 3 nucleotidesOH686_03385 and OH686_03390 are separated by 48 nucleotides OH686_03375: OH686_03375 - hypothetical protein, at 699,243 to 699,719 _03375 OH686_03380: OH686_03380 - hypothetical protein, at 699,736 to 700,335 _03380 OH686_03385: OH686_03385 - hypothetical protein, at 700,339 to 700,656 _03385 OH686_03390: OH686_03390 - Probable RNA methyltransferase, at 700,705 to 701,733 _03390 Position (kb) 700 701Strain fitness (log2 ratio) -2 -1 0 1 2at 699.348 kb on + strand, within OH686_03375at 699.348 kb on + strand, within OH686_03375at 699.349 kb on - strand, within OH686_03375at 699.349 kb on - strand, within OH686_03375at 699.349 kb on - strand, within OH686_03375at 699.349 kb on - strand, within OH686_03375at 699.349 kb on - strand, within OH686_03375at 699.579 kb on + strand, within OH686_03375at 699.579 kb on + strand, within OH686_03375at 699.579 kb on + strand, within OH686_03375at 699.579 kb on + strand, within OH686_03375at 699.579 kb on + strand, within OH686_03375at 699.579 kb on + strand, within OH686_03375at 699.579 kb on + strand, within OH686_03375at 699.580 kb on - strand, within OH686_03375at 699.580 kb on - strand, within OH686_03375at 699.580 kb on - strand, within OH686_03375at 699.580 kb on - strand, within OH686_03375at 699.580 kb on - strand, within OH686_03375at 699.580 kb on - strand, within OH686_03375at 699.642 kb on + strand, within OH686_03375at 699.642 kb on + strand, within OH686_03375at 699.642 kb on + strand, within OH686_03375at 699.643 kb on - strand, within OH686_03375at 699.643 kb on - strand, within OH686_03375at 699.643 kb on - strand, within OH686_03375at 699.684 kb on + strandat 699.684 kb on + strandat 699.704 kb on - strandat 699.730 kb on + strandat 699.730 kb on + strandat 699.730 kb on + strandat 699.730 kb on + strandat 699.730 kb on + strandat 699.730 kb on + strandat 699.730 kb on + strandat 699.730 kb on + strandat 699.730 kb on + strandat 699.730 kb on + strandat 699.731 kb on - strandat 699.731 kb on - strandat 699.731 kb on - strandat 699.823 kb on + strand, within OH686_03380at 699.823 kb on + strand, within OH686_03380at 699.824 kb on - strand, within OH686_03380at 699.842 kb on - strand, within OH686_03380at 699.842 kb on - strand, within OH686_03380at 699.930 kb on + strand, within OH686_03380at 699.947 kb on + strand, within OH686_03380at 699.947 kb on + strand, within OH686_03380at 699.947 kb on + strand, within OH686_03380at 699.947 kb on + strand, within OH686_03380at 699.947 kb on + strand, within OH686_03380at 699.947 kb on + strand, within OH686_03380at 699.947 kb on + strand, within OH686_03380at 699.947 kb on + strand, within OH686_03380at 699.947 kb on + strand, within OH686_03380at 699.948 kb on - strand, within OH686_03380at 699.948 kb on - strand, within OH686_03380at 699.948 kb on - strand, within OH686_03380at 699.948 kb on - strand, within OH686_03380at 699.948 kb on - strand, within OH686_03380at 700.051 kb on + strand, within OH686_03380at 700.051 kb on + strand, within OH686_03380at 700.052 kb on - strand, within OH686_03380at 700.052 kb on - strand, within OH686_03380at 700.185 kb on + strand, within OH686_03380at 700.186 kb on - strand, within OH686_03380at 700.221 kb on + strand, within OH686_03380at 700.270 kb on + strand, within OH686_03380at 700.270 kb on + strand, within OH686_03380at 700.271 kb on - strand, within OH686_03380at 700.271 kb on - strand, within OH686_03380at 700.333 kb on + strandat 700.333 kb on + strandat 700.333 kb on + strandat 700.477 kb on + strand, within OH686_03385at 700.577 kb on + strand, within OH686_03385at 700.577 kb on + strand, within OH686_03385at 700.577 kb on + strand, within OH686_03385at 700.577 kb on + strand, within OH686_03385at 700.577 kb on + strand, within OH686_03385at 700.578 kb on - strand, within OH686_03385at 700.578 kb on - strand, within OH686_03385at 700.578 kb on - strand, within OH686_03385at 700.578 kb on - strand, within OH686_03385at 700.690 kb on + strandat 700.690 kb on + strandat 700.690 kb on + strandat 700.690 kb on + strandat 700.690 kb on + strandat 700.691 kb on - strandat 700.691 kb on - strandat 700.691 kb on - strandat 700.691 kb on - strandat 700.761 kb on + strandat 701.413 kb on + strand, within OH686_03390at 701.414 kb on - strand, within OH686_03390at 701.444 kb on - strand, within OH686_03390at 701.521 kb on + strand, within OH686_03390at 701.521 kb on + strand, within OH686_03390at 701.521 kb on + strand, within OH686_03390at 701.522 kb on - strand, within OH686_03390at 701.522 kb on - strand, within OH686_03390at 701.545 kb on + strand, within OH686_03390at 701.545 kb on + strand, within OH686_03390at 701.545 kb on + strand, within OH686_03390at 701.546 kb on - strand, within OH686_03390at 701.570 kb on - strand, within OH686_03390at 701.570 kb on - strand, within OH686_03390at 701.611 kb on + strand, within OH686_03390at 701.611 kb on + strand, within OH686_03390at 701.611 kb on + strand, within OH686_03390at 701.612 kb on - strand, within OH686_03390at 701.612 kb on - strand, within OH686_03390at 701.642 kb on + strandat 701.642 kb on + strandat 701.642 kb on + strandat 701.642 kb on + strandat 701.643 kb on - strandat 701.643 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
699,348 + OH686_03375 0.22 -0.2
699,348 + OH686_03375 0.22 -0.2
699,349 - OH686_03375 0.22 -0.3
699,349 - OH686_03375 0.22 -0.4
699,349 - OH686_03375 0.22 +0.0
699,349 - OH686_03375 0.22 +0.3
699,349 - OH686_03375 0.22 -0.4
699,579 + OH686_03375 0.70 -0.4
699,579 + OH686_03375 0.70 -0.2
699,579 + OH686_03375 0.70 +1.3
699,579 + OH686_03375 0.70 -0.7
699,579 + OH686_03375 0.70 +0.1
699,579 + OH686_03375 0.70 +0.4
699,579 + OH686_03375 0.70 +0.3
699,580 - OH686_03375 0.71 -0.1
699,580 - OH686_03375 0.71 +0.1
699,580 - OH686_03375 0.71 +0.2
699,580 - OH686_03375 0.71 +0.2
699,580 - OH686_03375 0.71 -0.7
699,580 - OH686_03375 0.71 -1.4
699,642 + OH686_03375 0.84 -0.2
699,642 + OH686_03375 0.84 -0.5
699,642 + OH686_03375 0.84 -0.1
699,643 - OH686_03375 0.84 +1.2
699,643 - OH686_03375 0.84 -0.0
699,643 - OH686_03375 0.84 +0.3
699,684 + +0.6
699,684 + -0.3
699,704 - +0.2
699,730 + -0.2
699,730 + +1.0
699,730 + +0.7
699,730 + +0.3
699,730 + -0.1
699,730 + +0.8
699,730 + +0.4
699,730 + +0.0
699,730 + +1.4
699,730 + +0.6
699,731 - +0.4
699,731 - +0.1
699,731 - -0.3
699,823 + OH686_03380 0.14 +2.2
699,823 + OH686_03380 0.14 -0.8
699,824 - OH686_03380 0.15 +0.7
699,842 - OH686_03380 0.18 +0.4
699,842 - OH686_03380 0.18 -0.2
699,930 + OH686_03380 0.32 -1.2
699,947 + OH686_03380 0.35 -0.4
699,947 + OH686_03380 0.35 +0.3
699,947 + OH686_03380 0.35 +0.1
699,947 + OH686_03380 0.35 +0.1
699,947 + OH686_03380 0.35 -0.9
699,947 + OH686_03380 0.35 +1.1
699,947 + OH686_03380 0.35 -0.2
699,947 + OH686_03380 0.35 -0.3
699,947 + OH686_03380 0.35 +0.2
699,948 - OH686_03380 0.35 -0.1
699,948 - OH686_03380 0.35 +0.0
699,948 - OH686_03380 0.35 -0.1
699,948 - OH686_03380 0.35 +0.2
699,948 - OH686_03380 0.35 -0.6
700,051 + OH686_03380 0.53 -0.0
700,051 + OH686_03380 0.53 -0.4
700,052 - OH686_03380 0.53 -0.6
700,052 - OH686_03380 0.53 +0.2
700,185 + OH686_03380 0.75 -0.8
700,186 - OH686_03380 0.75 +2.1
700,221 + OH686_03380 0.81 +1.3
700,270 + OH686_03380 0.89 +1.0
700,270 + OH686_03380 0.89 +0.3
700,271 - OH686_03380 0.89 +0.7
700,271 - OH686_03380 0.89 +0.1
700,333 + -1.3
700,333 + -0.5
700,333 + -0.2
700,477 + OH686_03385 0.43 +0.6
700,577 + OH686_03385 0.75 -0.2
700,577 + OH686_03385 0.75 +0.5
700,577 + OH686_03385 0.75 +0.5
700,577 + OH686_03385 0.75 +1.0
700,577 + OH686_03385 0.75 +0.3
700,578 - OH686_03385 0.75 -0.1
700,578 - OH686_03385 0.75 -0.4
700,578 - OH686_03385 0.75 +0.9
700,578 - OH686_03385 0.75 +0.4
700,690 + +0.8
700,690 + -0.3
700,690 + +0.2
700,690 + +0.5
700,690 + +1.4
700,691 - -0.3
700,691 - +0.2
700,691 - -1.2
700,691 - -0.1
700,761 + -0.2
701,413 + OH686_03390 0.69 -0.4
701,414 - OH686_03390 0.69 +0.1
701,444 - OH686_03390 0.72 +0.5
701,521 + OH686_03390 0.79 +0.4
701,521 + OH686_03390 0.79 -0.8
701,521 + OH686_03390 0.79 -0.5
701,522 - OH686_03390 0.79 +0.3
701,522 - OH686_03390 0.79 -0.1
701,545 + OH686_03390 0.82 +0.1
701,545 + OH686_03390 0.82 -0.3
701,545 + OH686_03390 0.82 -0.7
701,546 - OH686_03390 0.82 -0.1
701,570 - OH686_03390 0.84 +0.7
701,570 - OH686_03390 0.84 -0.4
701,611 + OH686_03390 0.88 -0.5
701,611 + OH686_03390 0.88 +0.4
701,611 + OH686_03390 0.88 -2.3
701,612 - OH686_03390 0.88 +0.2
701,612 - OH686_03390 0.88 -1.1
701,642 + +0.9
701,642 + -0.2
701,642 + +0.2
701,642 + +0.7
701,643 - -1.6
701,643 - +0.1

Or see this region's nucleotide sequence