Strain Fitness in Pseudomonas sp. S08-1 around OH686_03085

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03080 and OH686_03085 are separated by 4 nucleotidesOH686_03085 and OH686_03090 are separated by 53 nucleotides OH686_03080: OH686_03080 - dNTP triphosphohydrolase, broad substrate specificity, subgroup 3, at 643,467 to 644,798 _03080 OH686_03085: OH686_03085 - hypothetical protein, at 644,803 to 645,852 _03085 OH686_03090: OH686_03090 - Chemotactic transducer-related protein, at 645,906 to 648,860 _03090 Position (kb) 644 645 646Strain fitness (log2 ratio) -2 -1 0 1 2at 643.956 kb on + strand, within OH686_03080at 643.956 kb on + strand, within OH686_03080at 643.957 kb on - strand, within OH686_03080at 643.957 kb on - strand, within OH686_03080at 643.957 kb on - strand, within OH686_03080at 643.957 kb on - strand, within OH686_03080at 643.957 kb on - strand, within OH686_03080at 643.957 kb on - strand, within OH686_03080at 643.989 kb on + strand, within OH686_03080at 643.989 kb on + strand, within OH686_03080at 643.989 kb on + strand, within OH686_03080at 643.989 kb on + strand, within OH686_03080at 643.989 kb on + strand, within OH686_03080at 643.989 kb on + strand, within OH686_03080at 643.989 kb on + strand, within OH686_03080at 643.990 kb on - strand, within OH686_03080at 643.990 kb on - strand, within OH686_03080at 643.990 kb on - strand, within OH686_03080at 643.990 kb on - strand, within OH686_03080at 644.007 kb on + strand, within OH686_03080at 644.008 kb on - strand, within OH686_03080at 644.008 kb on - strand, within OH686_03080at 644.008 kb on - strand, within OH686_03080at 644.016 kb on + strand, within OH686_03080at 644.017 kb on - strand, within OH686_03080at 644.052 kb on + strand, within OH686_03080at 644.169 kb on + strand, within OH686_03080at 644.199 kb on + strand, within OH686_03080at 644.199 kb on + strand, within OH686_03080at 644.247 kb on + strand, within OH686_03080at 644.266 kb on + strand, within OH686_03080at 644.304 kb on + strand, within OH686_03080at 644.305 kb on - strand, within OH686_03080at 644.305 kb on - strand, within OH686_03080at 644.305 kb on - strand, within OH686_03080at 644.305 kb on - strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.459 kb on + strand, within OH686_03080at 644.460 kb on - strand, within OH686_03080at 644.460 kb on - strand, within OH686_03080at 644.460 kb on - strand, within OH686_03080at 644.460 kb on - strand, within OH686_03080at 644.460 kb on - strand, within OH686_03080at 644.460 kb on - strand, within OH686_03080at 644.460 kb on - strand, within OH686_03080at 644.460 kb on - strand, within OH686_03080at 644.460 kb on - strand, within OH686_03080at 644.460 kb on - strand, within OH686_03080at 644.460 kb on - strand, within OH686_03080at 644.460 kb on - strand, within OH686_03080at 644.559 kb on + strand, within OH686_03080at 644.559 kb on + strand, within OH686_03080at 644.559 kb on + strand, within OH686_03080at 644.560 kb on - strand, within OH686_03080at 644.560 kb on - strand, within OH686_03080at 644.671 kb on - strandat 644.697 kb on + strandat 644.697 kb on + strandat 644.697 kb on + strandat 644.697 kb on + strandat 644.697 kb on + strandat 644.698 kb on - strandat 644.698 kb on - strandat 644.698 kb on - strandat 644.698 kb on - strandat 644.698 kb on - strandat 644.748 kb on + strandat 644.748 kb on + strandat 644.748 kb on + strandat 644.748 kb on + strandat 644.748 kb on + strandat 644.748 kb on + strandat 644.748 kb on + strandat 644.749 kb on - strandat 644.749 kb on - strandat 644.749 kb on - strandat 644.749 kb on - strandat 644.749 kb on - strandat 644.749 kb on - strandat 644.749 kb on - strandat 645.095 kb on - strand, within OH686_03085at 645.095 kb on - strand, within OH686_03085at 645.164 kb on + strand, within OH686_03085at 645.165 kb on - strand, within OH686_03085at 645.310 kb on + strand, within OH686_03085at 645.310 kb on + strand, within OH686_03085at 645.310 kb on + strand, within OH686_03085at 645.310 kb on + strand, within OH686_03085at 645.310 kb on + strand, within OH686_03085at 645.310 kb on + strand, within OH686_03085at 645.310 kb on + strand, within OH686_03085at 645.310 kb on + strand, within OH686_03085at 645.310 kb on + strand, within OH686_03085at 645.310 kb on + strand, within OH686_03085at 645.311 kb on - strand, within OH686_03085at 645.311 kb on - strand, within OH686_03085at 645.311 kb on - strand, within OH686_03085at 645.311 kb on - strand, within OH686_03085at 645.311 kb on - strand, within OH686_03085at 645.311 kb on - strand, within OH686_03085at 645.460 kb on + strand, within OH686_03085at 645.461 kb on - strand, within OH686_03085at 645.571 kb on + strand, within OH686_03085at 645.571 kb on + strand, within OH686_03085at 645.571 kb on + strand, within OH686_03085at 645.571 kb on + strand, within OH686_03085at 645.571 kb on + strand, within OH686_03085at 645.571 kb on + strand, within OH686_03085at 645.572 kb on - strand, within OH686_03085at 645.572 kb on - strand, within OH686_03085at 645.572 kb on - strand, within OH686_03085at 645.572 kb on - strand, within OH686_03085at 645.572 kb on - strand, within OH686_03085at 645.572 kb on - strand, within OH686_03085at 645.572 kb on - strand, within OH686_03085at 645.572 kb on - strand, within OH686_03085at 645.661 kb on + strand, within OH686_03085at 645.661 kb on + strand, within OH686_03085at 645.662 kb on - strand, within OH686_03085at 645.862 kb on + strandat 645.862 kb on + strandat 645.863 kb on - strandat 645.863 kb on - strandat 645.863 kb on - strandat 645.956 kb on + strandat 645.956 kb on + strandat 645.957 kb on - strandat 645.957 kb on - strandat 645.957 kb on - strandat 645.957 kb on - strandat 646.017 kb on + strandat 646.017 kb on + strandat 646.017 kb on + strandat 646.017 kb on + strandat 646.017 kb on + strandat 646.017 kb on + strandat 646.017 kb on + strandat 646.017 kb on + strandat 646.017 kb on + strandat 646.017 kb on + strandat 646.017 kb on + strandat 646.017 kb on + strandat 646.017 kb on + strandat 646.017 kb on + strandat 646.018 kb on - strandat 646.018 kb on - strandat 646.018 kb on - strandat 646.018 kb on - strandat 646.018 kb on - strandat 646.020 kb on + strandat 646.020 kb on + strandat 646.021 kb on - strandat 646.021 kb on - strandat 646.021 kb on - strandat 646.101 kb on + strandat 646.101 kb on + strandat 646.101 kb on + strandat 646.101 kb on + strandat 646.101 kb on + strandat 646.101 kb on + strandat 646.101 kb on + strandat 646.101 kb on + strandat 646.101 kb on + strandat 646.101 kb on + strandat 646.101 kb on + strandat 646.102 kb on - strandat 646.102 kb on - strandat 646.102 kb on - strandat 646.102 kb on - strandat 646.102 kb on - strandat 646.102 kb on - strandat 646.107 kb on + strandat 646.107 kb on + strandat 646.107 kb on + strandat 646.107 kb on + strandat 646.107 kb on + strandat 646.107 kb on + strandat 646.107 kb on + strandat 646.107 kb on + strandat 646.107 kb on + strandat 646.107 kb on + strandat 646.107 kb on + strandat 646.108 kb on - strandat 646.108 kb on - strandat 646.108 kb on - strandat 646.108 kb on - strandat 646.108 kb on - strandat 646.108 kb on - strandat 646.108 kb on - strandat 646.108 kb on - strandat 646.108 kb on - strandat 646.108 kb on - strandat 646.108 kb on - strandat 646.108 kb on - strandat 646.242 kb on + strand, within OH686_03090at 646.242 kb on + strand, within OH686_03090at 646.242 kb on + strand, within OH686_03090at 646.242 kb on + strand, within OH686_03090at 646.243 kb on - strand, within OH686_03090at 646.243 kb on - strand, within OH686_03090at 646.446 kb on + strand, within OH686_03090at 646.446 kb on + strand, within OH686_03090at 646.446 kb on + strand, within OH686_03090at 646.447 kb on - strand, within OH686_03090at 646.447 kb on - strand, within OH686_03090at 646.447 kb on - strand, within OH686_03090at 646.447 kb on - strand, within OH686_03090at 646.447 kb on - strand, within OH686_03090at 646.447 kb on - strand, within OH686_03090at 646.447 kb on - strand, within OH686_03090at 646.447 kb on - strand, within OH686_03090at 646.515 kb on + strand, within OH686_03090at 646.515 kb on + strand, within OH686_03090at 646.515 kb on + strand, within OH686_03090at 646.515 kb on + strand, within OH686_03090at 646.516 kb on - strand, within OH686_03090at 646.662 kb on + strand, within OH686_03090at 646.662 kb on + strand, within OH686_03090at 646.662 kb on + strand, within OH686_03090at 646.663 kb on - strand, within OH686_03090at 646.845 kb on + strand, within OH686_03090at 646.845 kb on + strand, within OH686_03090at 646.845 kb on + strand, within OH686_03090at 646.845 kb on + strand, within OH686_03090at 646.845 kb on + strand, within OH686_03090at 646.845 kb on + strand, within OH686_03090at 646.845 kb on + strand, within OH686_03090at 646.845 kb on + strand, within OH686_03090at 646.846 kb on - strand, within OH686_03090at 646.846 kb on - strand, within OH686_03090

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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643,956 + OH686_03080 0.37 -0.5
643,956 + OH686_03080 0.37 -0.5
643,957 - OH686_03080 0.37 +0.6
643,957 - OH686_03080 0.37 +0.3
643,957 - OH686_03080 0.37 +0.9
643,957 - OH686_03080 0.37 +0.4
643,957 - OH686_03080 0.37 -0.4
643,957 - OH686_03080 0.37 -0.7
643,989 + OH686_03080 0.39 +1.8
643,989 + OH686_03080 0.39 +0.1
643,989 + OH686_03080 0.39 -0.1
643,989 + OH686_03080 0.39 -0.4
643,989 + OH686_03080 0.39 +0.9
643,989 + OH686_03080 0.39 +0.3
643,989 + OH686_03080 0.39 -0.5
643,990 - OH686_03080 0.39 -0.2
643,990 - OH686_03080 0.39 -0.3
643,990 - OH686_03080 0.39 -0.5
643,990 - OH686_03080 0.39 -1.1
644,007 + OH686_03080 0.41 +0.5
644,008 - OH686_03080 0.41 +0.3
644,008 - OH686_03080 0.41 +0.4
644,008 - OH686_03080 0.41 -0.7
644,016 + OH686_03080 0.41 -0.5
644,017 - OH686_03080 0.41 -0.7
644,052 + OH686_03080 0.44 +0.3
644,169 + OH686_03080 0.53 +0.4
644,199 + OH686_03080 0.55 +0.6
644,199 + OH686_03080 0.55 +0.0
644,247 + OH686_03080 0.59 -0.7
644,266 + OH686_03080 0.60 +0.4
644,304 + OH686_03080 0.63 -0.5
644,305 - OH686_03080 0.63 -0.4
644,305 - OH686_03080 0.63 +0.4
644,305 - OH686_03080 0.63 -0.3
644,305 - OH686_03080 0.63 -0.2
644,459 + OH686_03080 0.74 +0.2
644,459 + OH686_03080 0.74 +0.8
644,459 + OH686_03080 0.74 -0.6
644,459 + OH686_03080 0.74 -0.3
644,459 + OH686_03080 0.74 -0.1
644,459 + OH686_03080 0.74 -0.0
644,459 + OH686_03080 0.74 -0.0
644,459 + OH686_03080 0.74 +0.3
644,459 + OH686_03080 0.74 +0.2
644,459 + OH686_03080 0.74 +0.1
644,459 + OH686_03080 0.74 -0.3
644,459 + OH686_03080 0.74 +0.3
644,459 + OH686_03080 0.74 +0.9
644,459 + OH686_03080 0.74 +0.1
644,459 + OH686_03080 0.74 -0.2
644,459 + OH686_03080 0.74 -1.3
644,459 + OH686_03080 0.74 -1.3
644,459 + OH686_03080 0.74 +1.8
644,459 + OH686_03080 0.74 -0.3
644,460 - OH686_03080 0.75 +0.3
644,460 - OH686_03080 0.75 -0.4
644,460 - OH686_03080 0.75 -0.1
644,460 - OH686_03080 0.75 -0.5
644,460 - OH686_03080 0.75 +0.2
644,460 - OH686_03080 0.75 +0.8
644,460 - OH686_03080 0.75 -1.1
644,460 - OH686_03080 0.75 +0.1
644,460 - OH686_03080 0.75 -0.7
644,460 - OH686_03080 0.75 -0.1
644,460 - OH686_03080 0.75 +0.8
644,460 - OH686_03080 0.75 -1.2
644,559 + OH686_03080 0.82 -0.3
644,559 + OH686_03080 0.82 +0.2
644,559 + OH686_03080 0.82 -0.0
644,560 - OH686_03080 0.82 +0.1
644,560 - OH686_03080 0.82 -0.5
644,671 - -0.2
644,697 + +0.0
644,697 + -0.1
644,697 + +0.2
644,697 + +0.9
644,697 + -0.1
644,698 - -0.1
644,698 - -0.8
644,698 - +0.1
644,698 - +0.1
644,698 - -0.6
644,748 + +1.2
644,748 + +0.4
644,748 + +0.3
644,748 + +0.4
644,748 + +0.5
644,748 + +0.6
644,748 + +0.2
644,749 - -0.1
644,749 - -0.7
644,749 - -0.3
644,749 - -0.4
644,749 - -0.5
644,749 - +0.5
644,749 - +0.4
645,095 - OH686_03085 0.28 -1.4
645,095 - OH686_03085 0.28 -1.1
645,164 + OH686_03085 0.34 -0.6
645,165 - OH686_03085 0.34 -0.5
645,310 + OH686_03085 0.48 -1.8
645,310 + OH686_03085 0.48 -2.4
645,310 + OH686_03085 0.48 -0.0
645,310 + OH686_03085 0.48 -1.4
645,310 + OH686_03085 0.48 -0.5
645,310 + OH686_03085 0.48 -1.0
645,310 + OH686_03085 0.48 +0.1
645,310 + OH686_03085 0.48 -1.1
645,310 + OH686_03085 0.48 -0.9
645,310 + OH686_03085 0.48 -2.5
645,311 - OH686_03085 0.48 -0.7
645,311 - OH686_03085 0.48 -0.9
645,311 - OH686_03085 0.48 -1.1
645,311 - OH686_03085 0.48 -0.6
645,311 - OH686_03085 0.48 -0.7
645,311 - OH686_03085 0.48 -1.4
645,460 + OH686_03085 0.63 -0.6
645,461 - OH686_03085 0.63 -0.1
645,571 + OH686_03085 0.73 -2.0
645,571 + OH686_03085 0.73 -0.6
645,571 + OH686_03085 0.73 -0.5
645,571 + OH686_03085 0.73 -0.1
645,571 + OH686_03085 0.73 -0.6
645,571 + OH686_03085 0.73 -1.1
645,572 - OH686_03085 0.73 -1.4
645,572 - OH686_03085 0.73 +0.1
645,572 - OH686_03085 0.73 -1.2
645,572 - OH686_03085 0.73 -0.8
645,572 - OH686_03085 0.73 -0.5
645,572 - OH686_03085 0.73 -2.0
645,572 - OH686_03085 0.73 -1.1
645,572 - OH686_03085 0.73 -0.4
645,661 + OH686_03085 0.82 -0.4
645,661 + OH686_03085 0.82 -1.3
645,662 - OH686_03085 0.82 -1.2
645,862 + -0.3
645,862 + -0.1
645,863 - +0.2
645,863 - +1.0
645,863 - -0.3
645,956 + +1.2
645,956 + +1.1
645,957 - -0.0
645,957 - +0.9
645,957 - -0.3
645,957 - -0.3
646,017 + +0.1
646,017 + -1.3
646,017 + -0.1
646,017 + -1.1
646,017 + -0.6
646,017 + -0.7
646,017 + +0.7
646,017 + -0.4
646,017 + -0.4
646,017 + -0.8
646,017 + +0.2
646,017 + -0.6
646,017 + -0.3
646,017 + -0.5
646,018 - -0.5
646,018 - +0.4
646,018 - -1.5
646,018 - -1.2
646,018 - +2.0
646,020 + -0.1
646,020 + +1.0
646,021 - -1.4
646,021 - -1.0
646,021 - -1.0
646,101 + +0.2
646,101 + -0.6
646,101 + -0.0
646,101 + +0.0
646,101 + -0.9
646,101 + +0.7
646,101 + -1.0
646,101 + -0.5
646,101 + +0.1
646,101 + -1.4
646,101 + -0.1
646,102 - -0.2
646,102 - +0.0
646,102 - +0.3
646,102 - -0.4
646,102 - -1.0
646,102 - +0.1
646,107 + +0.4
646,107 + +0.7
646,107 + +0.7
646,107 + -0.3
646,107 + -0.3
646,107 + -0.7
646,107 + -0.5
646,107 + -0.5
646,107 + +0.2
646,107 + +0.4
646,107 + -2.1
646,108 - +0.2
646,108 - +0.0
646,108 - -0.4
646,108 - -0.1
646,108 - -0.1
646,108 - +0.2
646,108 - +0.3
646,108 - -0.2
646,108 - +0.9
646,108 - -0.4
646,108 - -0.0
646,108 - -1.2
646,242 + OH686_03090 0.11 +1.1
646,242 + OH686_03090 0.11 +0.5
646,242 + OH686_03090 0.11 +0.4
646,242 + OH686_03090 0.11 -0.6
646,243 - OH686_03090 0.11 -0.7
646,243 - OH686_03090 0.11 +0.0
646,446 + OH686_03090 0.18 -0.3
646,446 + OH686_03090 0.18 -0.8
646,446 + OH686_03090 0.18 -1.0
646,447 - OH686_03090 0.18 -0.3
646,447 - OH686_03090 0.18 +0.4
646,447 - OH686_03090 0.18 +0.9
646,447 - OH686_03090 0.18 +0.2
646,447 - OH686_03090 0.18 -0.8
646,447 - OH686_03090 0.18 -0.1
646,447 - OH686_03090 0.18 +0.1
646,447 - OH686_03090 0.18 -0.4
646,515 + OH686_03090 0.21 +0.1
646,515 + OH686_03090 0.21 -0.1
646,515 + OH686_03090 0.21 +0.5
646,515 + OH686_03090 0.21 +1.3
646,516 - OH686_03090 0.21 -0.2
646,662 + OH686_03090 0.26 -0.7
646,662 + OH686_03090 0.26 +0.2
646,662 + OH686_03090 0.26 +0.4
646,663 - OH686_03090 0.26 -0.0
646,845 + OH686_03090 0.32 -0.5
646,845 + OH686_03090 0.32 -0.3
646,845 + OH686_03090 0.32 -0.5
646,845 + OH686_03090 0.32 -2.0
646,845 + OH686_03090 0.32 -1.2
646,845 + OH686_03090 0.32 -0.2
646,845 + OH686_03090 0.32 +1.3
646,845 + OH686_03090 0.32 +0.2
646,846 - OH686_03090 0.32 -0.0
646,846 - OH686_03090 0.32 +0.9

Or see this region's nucleotide sequence