Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_03035 and OH686_03040 are separated by 127 nucleotides OH686_03040 and OH686_03045 are separated by 16 nucleotides OH686_03045 and OH686_03050 are separated by 107 nucleotides
OH686_03035: OH686_03035 - Transcriptional regulator, AcrR family, at 635,793 to 636,350
_03035
OH686_03040: OH686_03040 - Glutathione S-transferase, unnamed subgroup , at 636,478 to 637,074
_03040
OH686_03045: OH686_03045 - Zn-dependent hydrolase, at 637,091 to 638,029
_03045
OH686_03050: OH686_03050 - Outer membrane low permeability porin, OprD family, at 638,137 to 639,408
_03050
Position (kb) 637
638
639 Strain fitness (log2 ratio) -2
-1
0
1
2 at 636.226 kb on + strand, within OH686_03035 at 636.226 kb on + strand, within OH686_03035 at 636.226 kb on + strand, within OH686_03035 at 636.226 kb on + strand, within OH686_03035 at 636.226 kb on + strand, within OH686_03035 at 636.227 kb on - strand, within OH686_03035 at 636.227 kb on - strand, within OH686_03035 at 636.227 kb on - strand, within OH686_03035 at 636.227 kb on - strand, within OH686_03035 at 636.227 kb on - strand, within OH686_03035 at 636.227 kb on - strand, within OH686_03035 at 636.286 kb on + strand, within OH686_03035 at 636.375 kb on - strand at 636.375 kb on - strand at 636.375 kb on - strand at 636.455 kb on + strand at 636.455 kb on + strand at 636.455 kb on + strand at 636.455 kb on + strand at 636.455 kb on + strand at 636.455 kb on + strand at 636.455 kb on + strand at 636.455 kb on + strand at 636.455 kb on + strand at 636.455 kb on + strand at 636.455 kb on + strand at 636.456 kb on - strand at 636.456 kb on - strand at 636.456 kb on - strand at 636.456 kb on - strand at 636.514 kb on + strand at 636.514 kb on + strand at 636.514 kb on + strand at 636.514 kb on + strand at 636.514 kb on + strand at 636.515 kb on - strand at 636.515 kb on - strand at 636.515 kb on - strand at 636.515 kb on - strand at 636.515 kb on - strand at 636.515 kb on - strand at 636.515 kb on - strand at 636.664 kb on + strand, within OH686_03040 at 636.664 kb on + strand, within OH686_03040 at 636.664 kb on + strand, within OH686_03040 at 636.664 kb on + strand, within OH686_03040 at 636.664 kb on + strand, within OH686_03040 at 636.664 kb on + strand, within OH686_03040 at 636.664 kb on + strand, within OH686_03040 at 636.664 kb on + strand, within OH686_03040 at 636.664 kb on + strand, within OH686_03040 at 636.664 kb on + strand, within OH686_03040 at 636.664 kb on + strand, within OH686_03040 at 636.665 kb on - strand, within OH686_03040 at 636.665 kb on - strand, within OH686_03040 at 636.665 kb on - strand, within OH686_03040 at 636.665 kb on - strand, within OH686_03040 at 636.665 kb on - strand, within OH686_03040 at 636.665 kb on - strand, within OH686_03040 at 636.665 kb on - strand, within OH686_03040 at 636.688 kb on + strand, within OH686_03040 at 636.689 kb on - strand, within OH686_03040 at 636.955 kb on + strand, within OH686_03040 at 636.956 kb on - strand, within OH686_03040 at 636.961 kb on + strand, within OH686_03040 at 636.961 kb on + strand, within OH686_03040 at 636.961 kb on + strand, within OH686_03040 at 636.961 kb on + strand, within OH686_03040 at 636.961 kb on + strand, within OH686_03040 at 636.961 kb on + strand, within OH686_03040 at 636.961 kb on + strand, within OH686_03040 at 636.961 kb on + strand, within OH686_03040 at 636.961 kb on + strand, within OH686_03040 at 636.961 kb on + strand, within OH686_03040 at 636.961 kb on + strand, within OH686_03040 at 636.962 kb on - strand, within OH686_03040 at 636.962 kb on - strand, within OH686_03040 at 636.962 kb on - strand, within OH686_03040 at 636.962 kb on - strand, within OH686_03040 at 636.962 kb on - strand, within OH686_03040 at 636.962 kb on - strand, within OH686_03040 at 636.962 kb on - strand, within OH686_03040 at 636.962 kb on - strand, within OH686_03040 at 636.962 kb on - strand, within OH686_03040 at 636.962 kb on - strand, within OH686_03040 at 636.962 kb on - strand, within OH686_03040 at 636.962 kb on - strand, within OH686_03040 at 636.962 kb on - strand, within OH686_03040 at 636.962 kb on - strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.003 kb on + strand, within OH686_03040 at 637.004 kb on - strand, within OH686_03040 at 637.004 kb on - strand, within OH686_03040 at 637.004 kb on - strand, within OH686_03040 at 637.004 kb on - strand, within OH686_03040 at 637.004 kb on - strand, within OH686_03040 at 637.004 kb on - strand, within OH686_03040 at 637.004 kb on - strand, within OH686_03040 at 637.004 kb on - strand, within OH686_03040 at 637.004 kb on - strand, within OH686_03040 at 637.004 kb on - strand, within OH686_03040 at 637.004 kb on - strand, within OH686_03040 at 637.004 kb on - strand, within OH686_03040 at 637.004 kb on - strand, within OH686_03040 at 637.004 kb on - strand, within OH686_03040 at 637.073 kb on - strand at 637.090 kb on + strand at 637.091 kb on - strand at 637.091 kb on - strand at 637.091 kb on - strand at 637.091 kb on - strand at 637.141 kb on + strand at 637.424 kb on + strand, within OH686_03045 at 637.424 kb on + strand, within OH686_03045 at 637.580 kb on + strand, within OH686_03045 at 637.671 kb on - strand, within OH686_03045 at 637.855 kb on + strand, within OH686_03045 at 637.856 kb on - strand, within OH686_03045 at 637.856 kb on - strand, within OH686_03045 at 637.856 kb on - strand, within OH686_03045 at 638.006 kb on + strand at 638.010 kb on - strand at 638.046 kb on + strand at 638.046 kb on + strand at 638.046 kb on + strand at 638.046 kb on - strand at 638.047 kb on - strand at 638.047 kb on - strand at 638.047 kb on - strand at 638.047 kb on - strand at 638.074 kb on + strand at 638.074 kb on + strand at 638.074 kb on + strand at 638.074 kb on + strand at 638.074 kb on + strand at 638.075 kb on - strand at 638.075 kb on - strand at 638.132 kb on + strand at 638.132 kb on + strand at 638.132 kb on + strand at 638.132 kb on + strand at 638.132 kb on + strand at 638.132 kb on + strand at 638.132 kb on + strand at 638.132 kb on + strand at 638.133 kb on - strand at 638.133 kb on - strand at 638.133 kb on - strand at 638.133 kb on - strand at 638.133 kb on - strand at 638.263 kb on + strand at 638.263 kb on + strand at 638.264 kb on - strand at 638.264 kb on - strand at 638.264 kb on - strand at 638.342 kb on - strand, within OH686_03050 at 638.342 kb on - strand, within OH686_03050 at 638.519 kb on + strand, within OH686_03050 at 638.519 kb on + strand, within OH686_03050 at 638.519 kb on + strand, within OH686_03050 at 638.519 kb on + strand, within OH686_03050 at 638.526 kb on + strand, within OH686_03050 at 638.526 kb on + strand, within OH686_03050 at 638.527 kb on - strand, within OH686_03050 at 638.797 kb on + strand, within OH686_03050 at 638.797 kb on + strand, within OH686_03050 at 638.797 kb on + strand, within OH686_03050 at 638.797 kb on + strand, within OH686_03050 at 638.797 kb on + strand, within OH686_03050 at 638.798 kb on - strand, within OH686_03050 at 638.798 kb on - strand, within OH686_03050 at 638.798 kb on - strand, within OH686_03050 at 638.798 kb on - strand, within OH686_03050 at 638.798 kb on - strand, within OH686_03050 at 638.798 kb on - strand, within OH686_03050 at 638.798 kb on - strand, within OH686_03050 at 638.798 kb on - strand, within OH686_03050 at 638.798 kb on - strand, within OH686_03050 at 638.798 kb on - strand, within OH686_03050 at 638.827 kb on + strand, within OH686_03050 at 638.854 kb on + strand, within OH686_03050 at 638.854 kb on + strand, within OH686_03050 at 638.854 kb on + strand, within OH686_03050 at 638.855 kb on - strand, within OH686_03050 at 638.855 kb on - strand, within OH686_03050 at 638.855 kb on - strand, within OH686_03050 at 638.855 kb on - strand, within OH686_03050 at 638.885 kb on + strand, within OH686_03050 at 638.885 kb on + strand, within OH686_03050 at 638.885 kb on + strand, within OH686_03050 at 638.885 kb on + strand, within OH686_03050 at 638.885 kb on + strand, within OH686_03050 at 638.885 kb on + strand, within OH686_03050 at 638.885 kb on + strand, within OH686_03050 at 638.885 kb on + strand, within OH686_03050 at 638.885 kb on + strand, within OH686_03050 at 638.885 kb on + strand, within OH686_03050 at 638.885 kb on + strand, within OH686_03050 at 638.886 kb on - strand, within OH686_03050 at 638.886 kb on - strand, within OH686_03050 at 638.886 kb on - strand, within OH686_03050 at 638.886 kb on - strand, within OH686_03050 at 638.886 kb on - strand, within OH686_03050 at 638.886 kb on - strand, within OH686_03050 at 638.886 kb on - strand, within OH686_03050 at 638.886 kb on - strand, within OH686_03050 at 638.888 kb on + strand, within OH686_03050 at 638.889 kb on - strand, within OH686_03050 at 638.901 kb on + strand, within OH686_03050 at 638.995 kb on + strand, within OH686_03050 at 638.995 kb on + strand, within OH686_03050 at 638.995 kb on + strand, within OH686_03050 at 638.995 kb on + strand, within OH686_03050 at 638.995 kb on + strand, within OH686_03050 at 638.995 kb on + strand, within OH686_03050 at 638.995 kb on + strand, within OH686_03050 at 638.996 kb on - strand, within OH686_03050 at 638.996 kb on - strand, within OH686_03050 at 638.996 kb on - strand, within OH686_03050 at 638.996 kb on - strand, within OH686_03050 at 638.996 kb on - strand, within OH686_03050 at 638.996 kb on - strand, within OH686_03050 at 638.996 kb on - strand, within OH686_03050 at 638.996 kb on - strand, within OH686_03050 at 639.028 kb on + strand, within OH686_03050
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 636,226 + OH686_03035 0.78 -0.1 636,226 + OH686_03035 0.78 +0.3 636,226 + OH686_03035 0.78 -0.7 636,226 + OH686_03035 0.78 -0.6 636,226 + OH686_03035 0.78 +0.2 636,227 - OH686_03035 0.78 +0.1 636,227 - OH686_03035 0.78 -1.7 636,227 - OH686_03035 0.78 -0.1 636,227 - OH686_03035 0.78 -0.1 636,227 - OH686_03035 0.78 +0.2 636,227 - OH686_03035 0.78 +0.1 636,286 + OH686_03035 0.88 +0.1 636,375 - -0.4 636,375 - +0.1 636,375 - -1.2 636,455 + -0.1 636,455 + +0.4 636,455 + -0.2 636,455 + -0.6 636,455 + +0.6 636,455 + +0.6 636,455 + +0.9 636,455 + -0.2 636,455 + +0.4 636,455 + +0.7 636,455 + -0.1 636,456 - -0.3 636,456 - -0.0 636,456 - -0.2 636,456 - -0.7 636,514 + +0.6 636,514 + +0.2 636,514 + -0.8 636,514 + -0.1 636,514 + +0.4 636,515 - +0.3 636,515 - -0.2 636,515 - -0.8 636,515 - -0.7 636,515 - +1.3 636,515 - -0.4 636,515 - -0.3 636,664 + OH686_03040 0.31 +0.6 636,664 + OH686_03040 0.31 -0.1 636,664 + OH686_03040 0.31 +0.5 636,664 + OH686_03040 0.31 -1.2 636,664 + OH686_03040 0.31 -0.9 636,664 + OH686_03040 0.31 +0.9 636,664 + OH686_03040 0.31 +0.1 636,664 + OH686_03040 0.31 -0.3 636,664 + OH686_03040 0.31 +0.6 636,664 + OH686_03040 0.31 -1.0 636,664 + OH686_03040 0.31 -0.5 636,665 - OH686_03040 0.31 -0.7 636,665 - OH686_03040 0.31 -0.8 636,665 - OH686_03040 0.31 -0.5 636,665 - OH686_03040 0.31 +0.2 636,665 - OH686_03040 0.31 -1.7 636,665 - OH686_03040 0.31 -1.2 636,665 - OH686_03040 0.31 -0.9 636,688 + OH686_03040 0.35 +0.1 636,689 - OH686_03040 0.35 -0.1 636,955 + OH686_03040 0.80 -0.7 636,956 - OH686_03040 0.80 +1.0 636,961 + OH686_03040 0.81 +0.7 636,961 + OH686_03040 0.81 -0.4 636,961 + OH686_03040 0.81 -0.9 636,961 + OH686_03040 0.81 -0.8 636,961 + OH686_03040 0.81 -0.0 636,961 + OH686_03040 0.81 -0.2 636,961 + OH686_03040 0.81 -0.3 636,961 + OH686_03040 0.81 -0.1 636,961 + OH686_03040 0.81 +1.2 636,961 + OH686_03040 0.81 +0.6 636,961 + OH686_03040 0.81 +0.3 636,962 - OH686_03040 0.81 +1.2 636,962 - OH686_03040 0.81 -0.5 636,962 - OH686_03040 0.81 -0.0 636,962 - OH686_03040 0.81 +0.6 636,962 - OH686_03040 0.81 +0.5 636,962 - OH686_03040 0.81 -0.2 636,962 - OH686_03040 0.81 -0.6 636,962 - OH686_03040 0.81 -0.6 636,962 - OH686_03040 0.81 -0.2 636,962 - OH686_03040 0.81 +1.0 636,962 - OH686_03040 0.81 -0.1 636,962 - OH686_03040 0.81 -0.4 636,962 - OH686_03040 0.81 +1.3 636,962 - OH686_03040 0.81 +0.2 637,003 + OH686_03040 0.88 +0.1 637,003 + OH686_03040 0.88 -0.0 637,003 + OH686_03040 0.88 -1.4 637,003 + OH686_03040 0.88 +0.8 637,003 + OH686_03040 0.88 +0.6 637,003 + OH686_03040 0.88 -0.5 637,003 + OH686_03040 0.88 +0.1 637,003 + OH686_03040 0.88 -0.0 637,003 + OH686_03040 0.88 -1.1 637,003 + OH686_03040 0.88 -1.0 637,003 + OH686_03040 0.88 -0.1 637,003 + OH686_03040 0.88 -2.6 637,003 + OH686_03040 0.88 -1.0 637,003 + OH686_03040 0.88 +0.3 637,003 + OH686_03040 0.88 +0.4 637,003 + OH686_03040 0.88 -0.6 637,003 + OH686_03040 0.88 -0.2 637,003 + OH686_03040 0.88 +0.2 637,004 - OH686_03040 0.88 +0.3 637,004 - OH686_03040 0.88 +0.8 637,004 - OH686_03040 0.88 -0.1 637,004 - OH686_03040 0.88 +0.5 637,004 - OH686_03040 0.88 +0.4 637,004 - OH686_03040 0.88 +0.4 637,004 - OH686_03040 0.88 -0.1 637,004 - OH686_03040 0.88 -0.3 637,004 - OH686_03040 0.88 -0.7 637,004 - OH686_03040 0.88 +1.1 637,004 - OH686_03040 0.88 -0.2 637,004 - OH686_03040 0.88 -1.6 637,004 - OH686_03040 0.88 -1.3 637,004 - OH686_03040 0.88 -0.2 637,073 - -0.1 637,090 + +0.8 637,091 - -0.1 637,091 - -0.5 637,091 - +0.1 637,091 - -0.7 637,141 + -0.9 637,424 + OH686_03045 0.35 +2.1 637,424 + OH686_03045 0.35 +0.4 637,580 + OH686_03045 0.52 +0.8 637,671 - OH686_03045 0.62 -0.0 637,855 + OH686_03045 0.81 +1.5 637,856 - OH686_03045 0.81 +0.2 637,856 - OH686_03045 0.81 -0.2 637,856 - OH686_03045 0.81 -0.2 638,006 + -0.1 638,010 - +0.9 638,046 + +0.7 638,046 + +0.1 638,046 + +0.2 638,046 - +0.9 638,047 - -0.5 638,047 - -1.2 638,047 - -1.8 638,047 - +0.6 638,074 + -0.5 638,074 + +0.0 638,074 + -0.7 638,074 + +0.7 638,074 + -0.4 638,075 - -0.1 638,075 - -0.7 638,132 + +0.1 638,132 + +0.2 638,132 + +0.4 638,132 + -1.8 638,132 + +0.3 638,132 + +0.7 638,132 + -0.6 638,132 + -0.1 638,133 - +0.6 638,133 - +0.3 638,133 - -0.8 638,133 - -0.0 638,133 - -0.1 638,263 + +0.6 638,263 + -0.3 638,264 - -1.6 638,264 - -0.7 638,264 - +0.0 638,342 - OH686_03050 0.16 +0.5 638,342 - OH686_03050 0.16 -1.3 638,519 + OH686_03050 0.30 +0.6 638,519 + OH686_03050 0.30 +0.3 638,519 + OH686_03050 0.30 -0.2 638,519 + OH686_03050 0.30 +0.3 638,526 + OH686_03050 0.31 -0.4 638,526 + OH686_03050 0.31 +0.1 638,527 - OH686_03050 0.31 -0.2 638,797 + OH686_03050 0.52 -0.4 638,797 + OH686_03050 0.52 -0.2 638,797 + OH686_03050 0.52 -0.6 638,797 + OH686_03050 0.52 -0.7 638,797 + OH686_03050 0.52 +0.1 638,798 - OH686_03050 0.52 +0.4 638,798 - OH686_03050 0.52 -0.4 638,798 - OH686_03050 0.52 +0.1 638,798 - OH686_03050 0.52 +0.3 638,798 - OH686_03050 0.52 +0.4 638,798 - OH686_03050 0.52 +0.5 638,798 - OH686_03050 0.52 -0.4 638,798 - OH686_03050 0.52 +0.1 638,798 - OH686_03050 0.52 +0.3 638,798 - OH686_03050 0.52 -0.4 638,827 + OH686_03050 0.54 +0.0 638,854 + OH686_03050 0.56 -0.9 638,854 + OH686_03050 0.56 +0.6 638,854 + OH686_03050 0.56 +0.3 638,855 - OH686_03050 0.56 +0.1 638,855 - OH686_03050 0.56 +0.2 638,855 - OH686_03050 0.56 +0.8 638,855 - OH686_03050 0.56 -0.3 638,885 + OH686_03050 0.59 -0.1 638,885 + OH686_03050 0.59 +0.2 638,885 + OH686_03050 0.59 -0.2 638,885 + OH686_03050 0.59 -0.2 638,885 + OH686_03050 0.59 +0.2 638,885 + OH686_03050 0.59 -0.1 638,885 + OH686_03050 0.59 -0.4 638,885 + OH686_03050 0.59 +0.8 638,885 + OH686_03050 0.59 +0.2 638,885 + OH686_03050 0.59 +0.2 638,885 + OH686_03050 0.59 +1.0 638,886 - OH686_03050 0.59 -0.1 638,886 - OH686_03050 0.59 -0.1 638,886 - OH686_03050 0.59 +0.7 638,886 - OH686_03050 0.59 -0.2 638,886 - OH686_03050 0.59 +1.2 638,886 - OH686_03050 0.59 +0.3 638,886 - OH686_03050 0.59 -0.8 638,886 - OH686_03050 0.59 +0.4 638,888 + OH686_03050 0.59 +0.1 638,889 - OH686_03050 0.59 -0.6 638,901 + OH686_03050 0.60 -0.2 638,995 + OH686_03050 0.67 +0.3 638,995 + OH686_03050 0.67 -0.2 638,995 + OH686_03050 0.67 -0.1 638,995 + OH686_03050 0.67 -0.7 638,995 + OH686_03050 0.67 -0.8 638,995 + OH686_03050 0.67 +0.9 638,995 + OH686_03050 0.67 -0.9 638,996 - OH686_03050 0.68 +0.0 638,996 - OH686_03050 0.68 -0.0 638,996 - OH686_03050 0.68 +0.9 638,996 - OH686_03050 0.68 +0.5 638,996 - OH686_03050 0.68 -0.5 638,996 - OH686_03050 0.68 -0.7 638,996 - OH686_03050 0.68 -0.1 638,996 - OH686_03050 0.68 +0.1 639,028 + OH686_03050 0.70 +0.5
Or see this region's nucleotide sequence