Strain Fitness in Pseudomonas sp. S08-1 around OH686_03000

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02990 and OH686_02995 are separated by 133 nucleotidesOH686_02995 and OH686_03000 are separated by 49 nucleotidesOH686_03000 and OH686_03005 overlap by 61 nucleotidesOH686_03005 and OH686_03010 overlap by 42 nucleotidesOH686_03010 and OH686_03015 are separated by 48 nucleotides OH686_02990: OH686_02990 - hypothetical protein, at 628,257 to 628,982 _02990 OH686_02995: OH686_02995 - flagellar biosynthesis anti-sigma factor FlgM, at 629,116 to 629,457 _02995 OH686_03000: OH686_03000 - Flagellar biosynthesis protein FlgN, at 629,507 to 629,974 _03000 OH686_03005: OH686_03005 - hypothetical protein' product='hypothetical protein, at 629,914 to 630,153 _03005 OH686_03010: OH686_03010 - Flagellar brake protein YcgR, at 630,112 to 630,792 _03010 OH686_03015: OH686_03015 - glutamine synthetase family protein, at 630,841 to 632,184 _03015 Position (kb) 629 630Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 628.615 kb on + strand, within OH686_02990at 628.661 kb on + strand, within OH686_02990at 628.661 kb on + strand, within OH686_02990at 628.661 kb on + strand, within OH686_02990at 628.661 kb on + strand, within OH686_02990at 628.662 kb on - strand, within OH686_02990at 628.704 kb on + strand, within OH686_02990at 628.704 kb on + strand, within OH686_02990at 628.704 kb on + strand, within OH686_02990at 628.704 kb on + strand, within OH686_02990at 628.704 kb on + strand, within OH686_02990at 628.704 kb on + strand, within OH686_02990at 628.705 kb on - strand, within OH686_02990at 628.705 kb on - strand, within OH686_02990at 628.705 kb on - strand, within OH686_02990at 628.705 kb on - strand, within OH686_02990at 628.705 kb on - strand, within OH686_02990at 628.705 kb on - strand, within OH686_02990at 628.705 kb on - strand, within OH686_02990at 628.705 kb on - strand, within OH686_02990at 628.706 kb on + strand, within OH686_02990at 628.706 kb on + strand, within OH686_02990at 628.706 kb on + strand, within OH686_02990at 628.706 kb on + strand, within OH686_02990at 628.706 kb on + strand, within OH686_02990at 628.706 kb on + strand, within OH686_02990at 628.707 kb on - strand, within OH686_02990at 628.707 kb on - strand, within OH686_02990at 628.707 kb on - strand, within OH686_02990at 628.768 kb on + strand, within OH686_02990at 628.768 kb on + strand, within OH686_02990at 628.769 kb on - strand, within OH686_02990at 628.769 kb on - strand, within OH686_02990at 628.850 kb on + strand, within OH686_02990at 628.850 kb on + strand, within OH686_02990at 628.850 kb on + strand, within OH686_02990at 628.850 kb on + strand, within OH686_02990at 628.850 kb on + strand, within OH686_02990at 628.850 kb on + strand, within OH686_02990at 628.851 kb on - strand, within OH686_02990at 628.851 kb on - strand, within OH686_02990at 628.918 kb on + strandat 628.918 kb on + strandat 628.918 kb on + strandat 628.918 kb on + strandat 628.918 kb on + strandat 628.918 kb on + strandat 628.918 kb on + strandat 628.918 kb on + strandat 628.918 kb on + strandat 628.919 kb on - strandat 628.919 kb on - strandat 628.919 kb on - strandat 628.919 kb on - strandat 628.919 kb on - strandat 628.919 kb on - strandat 628.919 kb on - strandat 628.951 kb on + strandat 628.951 kb on + strandat 628.951 kb on + strandat 628.951 kb on + strandat 628.951 kb on + strandat 628.951 kb on + strandat 628.951 kb on + strandat 628.952 kb on - strandat 628.952 kb on - strandat 628.952 kb on - strandat 628.952 kb on - strandat 628.952 kb on - strandat 628.980 kb on + strandat 628.980 kb on + strandat 628.980 kb on + strandat 628.981 kb on - strandat 628.981 kb on - strandat 628.981 kb on - strandat 628.981 kb on - strandat 628.981 kb on - strandat 629.019 kb on + strandat 629.019 kb on + strandat 629.020 kb on - strandat 629.040 kb on + strandat 629.040 kb on + strandat 629.040 kb on + strandat 629.040 kb on + strandat 629.040 kb on + strandat 629.040 kb on + strandat 629.040 kb on + strandat 629.041 kb on - strandat 629.041 kb on - strandat 629.041 kb on - strandat 629.051 kb on + strandat 629.096 kb on + strandat 629.097 kb on - strandat 629.110 kb on + strandat 629.110 kb on + strandat 629.110 kb on + strandat 629.110 kb on + strandat 629.110 kb on + strandat 629.110 kb on + strandat 629.111 kb on - strandat 629.111 kb on - strandat 629.111 kb on - strandat 629.352 kb on + strand, within OH686_02995at 629.398 kb on + strand, within OH686_02995at 629.398 kb on + strand, within OH686_02995at 629.398 kb on + strand, within OH686_02995at 629.399 kb on - strand, within OH686_02995at 629.399 kb on - strand, within OH686_02995at 629.399 kb on - strand, within OH686_02995at 629.455 kb on + strandat 629.456 kb on - strandat 629.515 kb on + strandat 629.515 kb on + strandat 629.515 kb on + strandat 629.515 kb on + strandat 629.515 kb on + strandat 629.516 kb on - strandat 629.516 kb on - strandat 629.516 kb on - strandat 629.546 kb on - strandat 629.772 kb on + strand, within OH686_03000at 629.916 kb on - strandat 629.916 kb on - strandat 629.916 kb on - strandat 629.939 kb on - strandat 629.939 kb on - strandat 629.979 kb on + strand, within OH686_03005at 629.980 kb on - strand, within OH686_03005at 629.980 kb on - strand, within OH686_03005at 629.980 kb on - strand, within OH686_03005at 630.016 kb on + strand, within OH686_03005at 630.029 kb on + strand, within OH686_03005at 630.029 kb on + strand, within OH686_03005at 630.029 kb on + strand, within OH686_03005at 630.030 kb on - strand, within OH686_03005at 630.032 kb on + strand, within OH686_03005at 630.032 kb on + strand, within OH686_03005at 630.032 kb on + strand, within OH686_03005at 630.032 kb on + strand, within OH686_03005at 630.032 kb on + strand, within OH686_03005at 630.032 kb on + strand, within OH686_03005at 630.032 kb on + strand, within OH686_03005at 630.033 kb on - strand, within OH686_03005at 630.033 kb on - strand, within OH686_03005at 630.033 kb on - strand, within OH686_03005at 630.033 kb on - strand, within OH686_03005at 630.033 kb on - strand, within OH686_03005at 630.202 kb on + strand, within OH686_03010at 630.202 kb on + strand, within OH686_03010at 630.202 kb on + strand, within OH686_03010at 630.202 kb on + strand, within OH686_03010at 630.202 kb on + strand, within OH686_03010at 630.202 kb on + strand, within OH686_03010at 630.202 kb on + strand, within OH686_03010at 630.203 kb on - strand, within OH686_03010at 630.203 kb on - strand, within OH686_03010at 630.203 kb on - strand, within OH686_03010at 630.203 kb on - strand, within OH686_03010at 630.203 kb on - strand, within OH686_03010at 630.203 kb on - strand, within OH686_03010at 630.203 kb on - strand, within OH686_03010at 630.233 kb on + strand, within OH686_03010at 630.233 kb on + strand, within OH686_03010at 630.233 kb on + strand, within OH686_03010at 630.233 kb on + strand, within OH686_03010at 630.234 kb on - strand, within OH686_03010at 630.234 kb on - strand, within OH686_03010at 630.385 kb on + strand, within OH686_03010at 630.386 kb on - strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.394 kb on + strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.395 kb on - strand, within OH686_03010at 630.396 kb on + strand, within OH686_03010at 630.396 kb on + strand, within OH686_03010at 630.396 kb on + strand, within OH686_03010at 630.396 kb on + strand, within OH686_03010at 630.415 kb on + strand, within OH686_03010at 630.415 kb on + strand, within OH686_03010at 630.415 kb on + strand, within OH686_03010at 630.415 kb on + strand, within OH686_03010at 630.415 kb on + strand, within OH686_03010at 630.415 kb on + strand, within OH686_03010at 630.415 kb on + strand, within OH686_03010at 630.416 kb on - strand, within OH686_03010at 630.416 kb on - strand, within OH686_03010at 630.416 kb on - strand, within OH686_03010at 630.416 kb on - strand, within OH686_03010at 630.416 kb on - strand, within OH686_03010at 630.416 kb on - strand, within OH686_03010at 630.416 kb on - strand, within OH686_03010at 630.489 kb on + strand, within OH686_03010at 630.490 kb on - strand, within OH686_03010at 630.490 kb on - strand, within OH686_03010at 630.490 kb on - strand, within OH686_03010at 630.526 kb on - strand, within OH686_03010at 630.526 kb on - strand, within OH686_03010at 630.596 kb on - strand, within OH686_03010at 630.596 kb on - strand, within OH686_03010at 630.664 kb on + strand, within OH686_03010at 630.664 kb on + strand, within OH686_03010at 630.664 kb on + strand, within OH686_03010at 630.665 kb on - strand, within OH686_03010at 630.665 kb on - strand, within OH686_03010at 630.665 kb on - strand, within OH686_03010at 630.758 kb on + strandat 630.758 kb on + strandat 630.758 kb on + strandat 630.758 kb on + strandat 630.758 kb on + strandat 630.758 kb on + strandat 630.758 kb on + strandat 630.759 kb on - strandat 630.759 kb on - strandat 630.759 kb on - strandat 630.759 kb on - strandat 630.759 kb on - strandat 630.759 kb on - strandat 630.790 kb on + strandat 630.790 kb on + strandat 630.790 kb on + strandat 630.790 kb on + strandat 630.790 kb on + strandat 630.791 kb on - strandat 630.791 kb on - strandat 630.791 kb on - strandat 630.791 kb on - strandat 630.791 kb on - strandat 630.893 kb on + strandat 630.893 kb on + strandat 630.893 kb on + strandat 630.893 kb on + strandat 630.893 kb on + strandat 630.893 kb on + strandat 630.893 kb on + strandat 630.893 kb on + strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.894 kb on - strandat 630.927 kb on - strandat 630.927 kb on - strandat 630.927 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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628,615 + OH686_02990 0.49 -0.2
628,661 + OH686_02990 0.56 +0.1
628,661 + OH686_02990 0.56 +0.2
628,661 + OH686_02990 0.56 -1.8
628,661 + OH686_02990 0.56 +0.1
628,662 - OH686_02990 0.56 +0.2
628,704 + OH686_02990 0.62 +0.3
628,704 + OH686_02990 0.62 +0.5
628,704 + OH686_02990 0.62 +0.4
628,704 + OH686_02990 0.62 -0.0
628,704 + OH686_02990 0.62 +0.4
628,704 + OH686_02990 0.62 -0.2
628,705 - OH686_02990 0.62 +0.6
628,705 - OH686_02990 0.62 +0.8
628,705 - OH686_02990 0.62 +0.4
628,705 - OH686_02990 0.62 +0.0
628,705 - OH686_02990 0.62 -0.7
628,705 - OH686_02990 0.62 +0.2
628,705 - OH686_02990 0.62 +1.2
628,705 - OH686_02990 0.62 +1.3
628,706 + OH686_02990 0.62 +0.1
628,706 + OH686_02990 0.62 +1.8
628,706 + OH686_02990 0.62 -0.3
628,706 + OH686_02990 0.62 +0.4
628,706 + OH686_02990 0.62 +1.8
628,706 + OH686_02990 0.62 +0.8
628,707 - OH686_02990 0.62 +0.9
628,707 - OH686_02990 0.62 +1.1
628,707 - OH686_02990 0.62 -0.4
628,768 + OH686_02990 0.70 -0.1
628,768 + OH686_02990 0.70 +0.5
628,769 - OH686_02990 0.71 +0.5
628,769 - OH686_02990 0.71 -0.0
628,850 + OH686_02990 0.82 +0.3
628,850 + OH686_02990 0.82 -1.1
628,850 + OH686_02990 0.82 +0.2
628,850 + OH686_02990 0.82 +0.1
628,850 + OH686_02990 0.82 +0.1
628,850 + OH686_02990 0.82 +0.3
628,851 - OH686_02990 0.82 +0.1
628,851 - OH686_02990 0.82 +0.4
628,918 + +0.1
628,918 + +0.2
628,918 + +0.6
628,918 + +0.6
628,918 + +0.2
628,918 + +0.5
628,918 + +0.4
628,918 + -0.3
628,918 + -0.7
628,919 - +0.9
628,919 - +0.6
628,919 - -0.5
628,919 - +0.7
628,919 - +0.3
628,919 - +0.4
628,919 - +0.4
628,951 + -0.1
628,951 + +1.0
628,951 + +0.3
628,951 + -3.8
628,951 + +0.4
628,951 + +0.3
628,951 + +0.6
628,952 - +0.8
628,952 - -0.3
628,952 - -0.8
628,952 - +0.8
628,952 - +0.3
628,980 + -0.5
628,980 + -0.3
628,980 + -0.1
628,981 - -0.9
628,981 - +0.1
628,981 - +0.6
628,981 - +0.2
628,981 - -0.8
629,019 + +1.4
629,019 + -0.5
629,020 - +0.2
629,040 + -0.2
629,040 + -0.3
629,040 + -0.2
629,040 + -0.5
629,040 + -0.1
629,040 + +0.3
629,040 + -0.5
629,041 - -0.2
629,041 - -0.4
629,041 - +0.4
629,051 + -0.5
629,096 + +0.7
629,097 - +0.3
629,110 + +0.1
629,110 + +0.5
629,110 + +0.6
629,110 + +0.5
629,110 + -0.3
629,110 + -0.5
629,111 - -0.2
629,111 - -0.2
629,111 - +0.4
629,352 + OH686_02995 0.69 -1.2
629,398 + OH686_02995 0.82 +0.2
629,398 + OH686_02995 0.82 -1.1
629,398 + OH686_02995 0.82 -0.1
629,399 - OH686_02995 0.83 -0.8
629,399 - OH686_02995 0.83 +0.8
629,399 - OH686_02995 0.83 -2.2
629,455 + +0.6
629,456 - +1.2
629,515 + +0.1
629,515 + -0.1
629,515 + -1.0
629,515 + +0.2
629,515 + -1.0
629,516 - +0.8
629,516 - -0.0
629,516 - +0.2
629,546 - +0.4
629,772 + OH686_03000 0.57 +0.6
629,916 - -0.4
629,916 - -0.9
629,916 - -0.6
629,939 - +0.1
629,939 - -0.6
629,979 + OH686_03005 0.27 -1.1
629,980 - OH686_03005 0.28 -0.8
629,980 - OH686_03005 0.28 -0.8
629,980 - OH686_03005 0.28 -1.1
630,016 + OH686_03005 0.42 +0.3
630,029 + OH686_03005 0.48 -0.2
630,029 + OH686_03005 0.48 +0.2
630,029 + OH686_03005 0.48 +0.1
630,030 - OH686_03005 0.48 +0.3
630,032 + OH686_03005 0.49 -0.9
630,032 + OH686_03005 0.49 +0.4
630,032 + OH686_03005 0.49 -0.0
630,032 + OH686_03005 0.49 +0.2
630,032 + OH686_03005 0.49 +0.8
630,032 + OH686_03005 0.49 -0.8
630,032 + OH686_03005 0.49 +0.2
630,033 - OH686_03005 0.50 +1.1
630,033 - OH686_03005 0.50 -0.0
630,033 - OH686_03005 0.50 +0.2
630,033 - OH686_03005 0.50 -0.8
630,033 - OH686_03005 0.50 -1.1
630,202 + OH686_03010 0.13 +0.4
630,202 + OH686_03010 0.13 -0.9
630,202 + OH686_03010 0.13 +0.1
630,202 + OH686_03010 0.13 -0.6
630,202 + OH686_03010 0.13 -0.1
630,202 + OH686_03010 0.13 +0.2
630,202 + OH686_03010 0.13 -1.0
630,203 - OH686_03010 0.13 +0.7
630,203 - OH686_03010 0.13 +0.3
630,203 - OH686_03010 0.13 +1.0
630,203 - OH686_03010 0.13 -0.1
630,203 - OH686_03010 0.13 +0.6
630,203 - OH686_03010 0.13 +0.2
630,203 - OH686_03010 0.13 +0.8
630,233 + OH686_03010 0.18 -0.7
630,233 + OH686_03010 0.18 -0.6
630,233 + OH686_03010 0.18 -0.0
630,233 + OH686_03010 0.18 -1.0
630,234 - OH686_03010 0.18 +0.6
630,234 - OH686_03010 0.18 -0.2
630,385 + OH686_03010 0.40 -0.1
630,386 - OH686_03010 0.40 +0.3
630,394 + OH686_03010 0.41 -0.7
630,394 + OH686_03010 0.41 -0.3
630,394 + OH686_03010 0.41 +0.8
630,394 + OH686_03010 0.41 -1.1
630,394 + OH686_03010 0.41 -0.3
630,394 + OH686_03010 0.41 +0.7
630,394 + OH686_03010 0.41 -0.1
630,394 + OH686_03010 0.41 +0.1
630,394 + OH686_03010 0.41 +0.2
630,394 + OH686_03010 0.41 +0.6
630,394 + OH686_03010 0.41 -0.2
630,394 + OH686_03010 0.41 -0.5
630,394 + OH686_03010 0.41 -0.8
630,394 + OH686_03010 0.41 -0.7
630,394 + OH686_03010 0.41 -0.4
630,394 + OH686_03010 0.41 +0.6
630,394 + OH686_03010 0.41 +0.8
630,394 + OH686_03010 0.41 -2.1
630,395 - OH686_03010 0.42 +0.0
630,395 - OH686_03010 0.42 +0.6
630,395 - OH686_03010 0.42 +0.5
630,395 - OH686_03010 0.42 -0.2
630,395 - OH686_03010 0.42 -0.2
630,395 - OH686_03010 0.42 -0.5
630,395 - OH686_03010 0.42 -0.1
630,395 - OH686_03010 0.42 +0.2
630,395 - OH686_03010 0.42 +0.1
630,395 - OH686_03010 0.42 +0.2
630,395 - OH686_03010 0.42 -0.5
630,395 - OH686_03010 0.42 +0.9
630,395 - OH686_03010 0.42 -0.2
630,395 - OH686_03010 0.42 +0.5
630,395 - OH686_03010 0.42 -0.3
630,395 - OH686_03010 0.42 +0.5
630,395 - OH686_03010 0.42 -0.2
630,395 - OH686_03010 0.42 -0.1
630,395 - OH686_03010 0.42 +0.0
630,395 - OH686_03010 0.42 -0.5
630,395 - OH686_03010 0.42 +1.1
630,396 + OH686_03010 0.42 +0.2
630,396 + OH686_03010 0.42 +1.0
630,396 + OH686_03010 0.42 +0.1
630,396 + OH686_03010 0.42 -0.1
630,415 + OH686_03010 0.44 +0.0
630,415 + OH686_03010 0.44 +0.5
630,415 + OH686_03010 0.44 -1.2
630,415 + OH686_03010 0.44 +0.8
630,415 + OH686_03010 0.44 +0.2
630,415 + OH686_03010 0.44 +0.0
630,415 + OH686_03010 0.44 +0.0
630,416 - OH686_03010 0.45 +0.2
630,416 - OH686_03010 0.45 -0.5
630,416 - OH686_03010 0.45 -0.2
630,416 - OH686_03010 0.45 -0.2
630,416 - OH686_03010 0.45 -0.6
630,416 - OH686_03010 0.45 +0.5
630,416 - OH686_03010 0.45 +0.5
630,489 + OH686_03010 0.55 -0.4
630,490 - OH686_03010 0.56 +0.5
630,490 - OH686_03010 0.56 +0.8
630,490 - OH686_03010 0.56 +0.6
630,526 - OH686_03010 0.61 +1.3
630,526 - OH686_03010 0.61 +0.4
630,596 - OH686_03010 0.71 +0.4
630,596 - OH686_03010 0.71 -1.2
630,664 + OH686_03010 0.81 +0.8
630,664 + OH686_03010 0.81 -0.6
630,664 + OH686_03010 0.81 +0.2
630,665 - OH686_03010 0.81 +0.4
630,665 - OH686_03010 0.81 -0.3
630,665 - OH686_03010 0.81 -0.2
630,758 + +0.6
630,758 + +0.3
630,758 + -0.2
630,758 + -0.6
630,758 + -0.1
630,758 + +0.6
630,758 + +0.1
630,759 - +0.1
630,759 - -0.5
630,759 - -1.2
630,759 - -0.1
630,759 - -0.4
630,759 - +0.1
630,790 + -0.6
630,790 + +0.2
630,790 + +0.1
630,790 + -0.2
630,790 + -2.0
630,791 - -0.5
630,791 - +0.1
630,791 - -0.6
630,791 - +0.0
630,791 - +0.1
630,893 + +0.4
630,893 + +0.4
630,893 + -0.2
630,893 + -1.9
630,893 + -0.2
630,893 + -0.4
630,893 + -0.7
630,893 + -0.3
630,894 - +0.4
630,894 - +0.1
630,894 - +0.4
630,894 - +0.6
630,894 - +0.8
630,894 - +0.1
630,894 - +0.3
630,894 - +0.4
630,894 - -0.1
630,894 - +0.6
630,894 - +0.2
630,894 - -1.1
630,894 - -0.7
630,894 - -1.1
630,894 - -0.5
630,894 - +0.2
630,894 - +1.0
630,894 - +0.4
630,894 - +2.3
630,927 - -1.3
630,927 - -1.1
630,927 - +0.1

Or see this region's nucleotide sequence