Strain Fitness in Pseudomonas sp. S08-1 around OH686_02970

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02960 and OH686_02965 are separated by 44 nucleotidesOH686_02965 and OH686_02970 are separated by 22 nucleotidesOH686_02970 and OH686_02975 are separated by 13 nucleotidesOH686_02975 and OH686_02980 are separated by 233 nucleotides OH686_02960: OH686_02960 - Flagellar hook protein FlgE, at 623,197 to 624,507 _02960 OH686_02965: OH686_02965 - Flagellar basal-body rod modification protein FlgD, at 624,552 to 625,220 _02965 OH686_02970: OH686_02970 - flagellar basal-body rod protein FlgC, at 625,243 to 625,686 _02970 OH686_02975: OH686_02975 - flagellar basal-body rod protein FlgB, at 625,700 to 626,107 _02975 OH686_02980: OH686_02980 - Chemotaxis protein methyltransferase CheR , at 626,341 to 627,189 _02980 Position (kb) 625 626Strain fitness (log2 ratio) -2 -1 0 1 2at 624.284 kb on + strand, within OH686_02960at 624.284 kb on + strand, within OH686_02960at 624.284 kb on + strand, within OH686_02960at 624.284 kb on + strand, within OH686_02960at 624.285 kb on - strand, within OH686_02960at 624.285 kb on - strand, within OH686_02960at 624.285 kb on - strand, within OH686_02960at 624.285 kb on - strand, within OH686_02960at 624.285 kb on - strand, within OH686_02960at 624.285 kb on - strand, within OH686_02960at 624.381 kb on - strandat 624.511 kb on + strandat 624.511 kb on + strandat 624.512 kb on - strandat 624.512 kb on - strandat 624.512 kb on - strandat 624.512 kb on - strandat 624.512 kb on - strandat 624.512 kb on - strandat 624.527 kb on + strandat 624.540 kb on + strandat 624.540 kb on + strandat 624.541 kb on - strandat 624.554 kb on - strandat 624.565 kb on - strandat 624.673 kb on + strand, within OH686_02965at 624.673 kb on + strand, within OH686_02965at 624.673 kb on + strand, within OH686_02965at 624.674 kb on - strand, within OH686_02965at 624.674 kb on - strand, within OH686_02965at 624.674 kb on - strand, within OH686_02965at 624.674 kb on - strand, within OH686_02965at 624.697 kb on + strand, within OH686_02965at 624.697 kb on + strand, within OH686_02965at 624.697 kb on + strand, within OH686_02965at 624.697 kb on + strand, within OH686_02965at 624.697 kb on + strand, within OH686_02965at 624.697 kb on + strand, within OH686_02965at 624.698 kb on - strand, within OH686_02965at 624.698 kb on - strand, within OH686_02965at 624.698 kb on - strand, within OH686_02965at 624.698 kb on - strand, within OH686_02965at 624.701 kb on + strand, within OH686_02965at 624.702 kb on - strand, within OH686_02965at 624.721 kb on + strand, within OH686_02965at 624.721 kb on + strand, within OH686_02965at 624.721 kb on + strand, within OH686_02965at 624.721 kb on + strand, within OH686_02965at 624.721 kb on + strand, within OH686_02965at 624.721 kb on + strand, within OH686_02965at 624.722 kb on - strand, within OH686_02965at 624.722 kb on - strand, within OH686_02965at 624.722 kb on - strand, within OH686_02965at 624.722 kb on - strand, within OH686_02965at 624.722 kb on - strand, within OH686_02965at 624.722 kb on - strand, within OH686_02965at 624.838 kb on + strand, within OH686_02965at 624.838 kb on + strand, within OH686_02965at 624.838 kb on + strand, within OH686_02965at 624.838 kb on + strand, within OH686_02965at 624.838 kb on + strand, within OH686_02965at 624.838 kb on + strand, within OH686_02965at 624.838 kb on + strand, within OH686_02965at 624.838 kb on + strand, within OH686_02965at 624.838 kb on + strand, within OH686_02965at 624.839 kb on - strand, within OH686_02965at 624.839 kb on - strand, within OH686_02965at 624.839 kb on - strand, within OH686_02965at 624.839 kb on - strand, within OH686_02965at 624.850 kb on + strand, within OH686_02965at 624.850 kb on + strand, within OH686_02965at 624.850 kb on + strand, within OH686_02965at 624.851 kb on - strand, within OH686_02965at 624.851 kb on - strand, within OH686_02965at 624.851 kb on - strand, within OH686_02965at 624.986 kb on - strand, within OH686_02965at 625.194 kb on + strandat 625.244 kb on + strandat 625.245 kb on - strandat 625.245 kb on - strandat 625.370 kb on + strand, within OH686_02970at 625.371 kb on - strand, within OH686_02970at 625.373 kb on + strand, within OH686_02970at 625.373 kb on + strand, within OH686_02970at 625.373 kb on + strand, within OH686_02970at 625.373 kb on + strand, within OH686_02970at 625.374 kb on - strand, within OH686_02970at 625.374 kb on - strand, within OH686_02970at 625.374 kb on - strand, within OH686_02970at 625.374 kb on - strand, within OH686_02970at 625.374 kb on - strand, within OH686_02970at 625.374 kb on - strand, within OH686_02970at 625.374 kb on - strand, within OH686_02970at 625.379 kb on + strand, within OH686_02970at 625.379 kb on + strand, within OH686_02970at 625.379 kb on + strand, within OH686_02970at 625.379 kb on + strand, within OH686_02970at 625.379 kb on + strand, within OH686_02970at 625.379 kb on + strand, within OH686_02970at 625.380 kb on - strand, within OH686_02970at 625.380 kb on - strand, within OH686_02970at 625.380 kb on - strand, within OH686_02970at 625.380 kb on - strand, within OH686_02970at 625.415 kb on + strand, within OH686_02970at 625.562 kb on + strand, within OH686_02970at 625.562 kb on + strand, within OH686_02970at 625.562 kb on + strand, within OH686_02970at 625.562 kb on + strand, within OH686_02970at 625.563 kb on - strand, within OH686_02970at 625.563 kb on - strand, within OH686_02970at 625.563 kb on - strand, within OH686_02970at 625.620 kb on + strand, within OH686_02970at 625.620 kb on + strand, within OH686_02970at 625.620 kb on + strand, within OH686_02970at 625.621 kb on - strand, within OH686_02970at 625.621 kb on - strand, within OH686_02970at 625.701 kb on + strandat 625.760 kb on - strand, within OH686_02975at 625.760 kb on - strand, within OH686_02975at 625.760 kb on - strand, within OH686_02975at 625.760 kb on - strand, within OH686_02975at 625.760 kb on - strand, within OH686_02975at 625.760 kb on - strand, within OH686_02975at 625.760 kb on - strand, within OH686_02975at 625.788 kb on + strand, within OH686_02975at 625.788 kb on + strand, within OH686_02975at 625.788 kb on + strand, within OH686_02975at 625.788 kb on + strand, within OH686_02975at 625.788 kb on + strand, within OH686_02975at 625.788 kb on + strand, within OH686_02975at 625.788 kb on + strand, within OH686_02975at 625.788 kb on + strand, within OH686_02975at 625.789 kb on - strand, within OH686_02975at 625.789 kb on - strand, within OH686_02975at 625.789 kb on - strand, within OH686_02975at 625.789 kb on - strand, within OH686_02975at 625.789 kb on - strand, within OH686_02975at 625.995 kb on + strand, within OH686_02975at 625.995 kb on + strand, within OH686_02975at 625.995 kb on + strand, within OH686_02975at 625.995 kb on + strand, within OH686_02975at 625.995 kb on + strand, within OH686_02975at 625.995 kb on + strand, within OH686_02975at 625.995 kb on + strand, within OH686_02975at 625.995 kb on + strand, within OH686_02975at 625.995 kb on + strand, within OH686_02975at 625.995 kb on + strand, within OH686_02975at 625.995 kb on + strand, within OH686_02975at 625.995 kb on + strand, within OH686_02975at 625.995 kb on + strand, within OH686_02975at 625.996 kb on - strand, within OH686_02975at 625.996 kb on - strand, within OH686_02975at 625.996 kb on - strand, within OH686_02975at 625.996 kb on - strand, within OH686_02975at 625.996 kb on - strand, within OH686_02975at 625.996 kb on - strand, within OH686_02975at 625.996 kb on - strand, within OH686_02975at 625.996 kb on - strand, within OH686_02975at 626.354 kb on + strandat 626.354 kb on + strandat 626.354 kb on + strandat 626.354 kb on + strandat 626.354 kb on + strandat 626.354 kb on + strandat 626.354 kb on + strandat 626.354 kb on + strandat 626.354 kb on + strandat 626.354 kb on + strandat 626.354 kb on + strandat 626.355 kb on - strandat 626.355 kb on - strandat 626.355 kb on - strandat 626.355 kb on - strandat 626.355 kb on - strandat 626.355 kb on - strandat 626.355 kb on - strandat 626.355 kb on - strandat 626.355 kb on - strandat 626.355 kb on - strandat 626.355 kb on - strandat 626.355 kb on - strandat 626.387 kb on + strandat 626.387 kb on + strandat 626.387 kb on + strandat 626.388 kb on - strandat 626.388 kb on - strandat 626.435 kb on + strand, within OH686_02980at 626.436 kb on - strand, within OH686_02980at 626.436 kb on - strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.501 kb on + strand, within OH686_02980at 626.502 kb on - strand, within OH686_02980at 626.502 kb on - strand, within OH686_02980at 626.502 kb on - strand, within OH686_02980at 626.502 kb on - strand, within OH686_02980at 626.502 kb on - strand, within OH686_02980at 626.502 kb on - strand, within OH686_02980at 626.502 kb on - strand, within OH686_02980at 626.552 kb on + strand, within OH686_02980at 626.552 kb on + strand, within OH686_02980at 626.552 kb on + strand, within OH686_02980at 626.553 kb on - strand, within OH686_02980at 626.553 kb on - strand, within OH686_02980at 626.553 kb on - strand, within OH686_02980at 626.553 kb on - strand, within OH686_02980at 626.553 kb on - strand, within OH686_02980at 626.553 kb on - strand, within OH686_02980at 626.553 kb on - strand, within OH686_02980at 626.553 kb on - strand, within OH686_02980at 626.642 kb on + strand, within OH686_02980at 626.642 kb on + strand, within OH686_02980at 626.642 kb on + strand, within OH686_02980at 626.642 kb on + strand, within OH686_02980at 626.643 kb on - strand, within OH686_02980at 626.643 kb on - strand, within OH686_02980

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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624,284 + OH686_02960 0.83 +0.2
624,284 + OH686_02960 0.83 +0.1
624,284 + OH686_02960 0.83 -0.3
624,284 + OH686_02960 0.83 +0.8
624,285 - OH686_02960 0.83 +0.9
624,285 - OH686_02960 0.83 -0.5
624,285 - OH686_02960 0.83 -0.1
624,285 - OH686_02960 0.83 +1.7
624,285 - OH686_02960 0.83 +0.8
624,285 - OH686_02960 0.83 +0.4
624,381 - -0.2
624,511 + +0.8
624,511 + +0.2
624,512 - +0.7
624,512 - +0.7
624,512 - +0.9
624,512 - +0.3
624,512 - +1.0
624,512 - +0.4
624,527 + +0.5
624,540 + -0.0
624,540 + +0.0
624,541 - -0.1
624,554 - -0.4
624,565 - -0.3
624,673 + OH686_02965 0.18 -0.2
624,673 + OH686_02965 0.18 -0.1
624,673 + OH686_02965 0.18 +0.9
624,674 - OH686_02965 0.18 +0.5
624,674 - OH686_02965 0.18 +0.8
624,674 - OH686_02965 0.18 -0.7
624,674 - OH686_02965 0.18 +0.4
624,697 + OH686_02965 0.22 -0.1
624,697 + OH686_02965 0.22 +0.5
624,697 + OH686_02965 0.22 -0.5
624,697 + OH686_02965 0.22 +0.0
624,697 + OH686_02965 0.22 -2.5
624,697 + OH686_02965 0.22 -1.4
624,698 - OH686_02965 0.22 +1.9
624,698 - OH686_02965 0.22 +1.4
624,698 - OH686_02965 0.22 +1.6
624,698 - OH686_02965 0.22 -0.6
624,701 + OH686_02965 0.22 -0.0
624,702 - OH686_02965 0.22 +1.5
624,721 + OH686_02965 0.25 +0.4
624,721 + OH686_02965 0.25 +1.1
624,721 + OH686_02965 0.25 -0.5
624,721 + OH686_02965 0.25 -0.4
624,721 + OH686_02965 0.25 -2.4
624,721 + OH686_02965 0.25 +0.3
624,722 - OH686_02965 0.25 +0.7
624,722 - OH686_02965 0.25 -0.8
624,722 - OH686_02965 0.25 -0.0
624,722 - OH686_02965 0.25 -0.5
624,722 - OH686_02965 0.25 -0.2
624,722 - OH686_02965 0.25 -0.5
624,838 + OH686_02965 0.43 +0.5
624,838 + OH686_02965 0.43 -0.0
624,838 + OH686_02965 0.43 +0.0
624,838 + OH686_02965 0.43 -1.3
624,838 + OH686_02965 0.43 -0.6
624,838 + OH686_02965 0.43 +0.9
624,838 + OH686_02965 0.43 +0.7
624,838 + OH686_02965 0.43 -1.3
624,838 + OH686_02965 0.43 -0.6
624,839 - OH686_02965 0.43 -0.2
624,839 - OH686_02965 0.43 -0.2
624,839 - OH686_02965 0.43 -0.4
624,839 - OH686_02965 0.43 -0.6
624,850 + OH686_02965 0.45 -0.1
624,850 + OH686_02965 0.45 -0.7
624,850 + OH686_02965 0.45 +0.7
624,851 - OH686_02965 0.45 -0.8
624,851 - OH686_02965 0.45 +0.6
624,851 - OH686_02965 0.45 -1.0
624,986 - OH686_02965 0.65 +0.4
625,194 + -0.1
625,244 + +0.0
625,245 - -0.3
625,245 - -0.8
625,370 + OH686_02970 0.29 +0.0
625,371 - OH686_02970 0.29 +0.8
625,373 + OH686_02970 0.29 +0.1
625,373 + OH686_02970 0.29 +0.1
625,373 + OH686_02970 0.29 -0.4
625,373 + OH686_02970 0.29 +0.5
625,374 - OH686_02970 0.30 -2.0
625,374 - OH686_02970 0.30 -0.2
625,374 - OH686_02970 0.30 +0.8
625,374 - OH686_02970 0.30 +0.3
625,374 - OH686_02970 0.30 +1.0
625,374 - OH686_02970 0.30 +0.8
625,374 - OH686_02970 0.30 -0.3
625,379 + OH686_02970 0.31 -1.1
625,379 + OH686_02970 0.31 +0.6
625,379 + OH686_02970 0.31 +0.6
625,379 + OH686_02970 0.31 +0.1
625,379 + OH686_02970 0.31 -0.3
625,379 + OH686_02970 0.31 +1.0
625,380 - OH686_02970 0.31 +0.1
625,380 - OH686_02970 0.31 +0.3
625,380 - OH686_02970 0.31 +0.0
625,380 - OH686_02970 0.31 +0.2
625,415 + OH686_02970 0.39 +0.5
625,562 + OH686_02970 0.72 +0.2
625,562 + OH686_02970 0.72 -1.6
625,562 + OH686_02970 0.72 +0.4
625,562 + OH686_02970 0.72 +0.4
625,563 - OH686_02970 0.72 +0.7
625,563 - OH686_02970 0.72 +0.7
625,563 - OH686_02970 0.72 +0.5
625,620 + OH686_02970 0.85 +0.4
625,620 + OH686_02970 0.85 -0.1
625,620 + OH686_02970 0.85 +0.8
625,621 - OH686_02970 0.85 -0.4
625,621 - OH686_02970 0.85 +0.0
625,701 + -0.3
625,760 - OH686_02975 0.15 +0.4
625,760 - OH686_02975 0.15 -0.9
625,760 - OH686_02975 0.15 -0.9
625,760 - OH686_02975 0.15 +0.1
625,760 - OH686_02975 0.15 -0.3
625,760 - OH686_02975 0.15 +0.4
625,760 - OH686_02975 0.15 +0.5
625,788 + OH686_02975 0.22 +1.1
625,788 + OH686_02975 0.22 +0.8
625,788 + OH686_02975 0.22 -0.0
625,788 + OH686_02975 0.22 +0.1
625,788 + OH686_02975 0.22 +0.2
625,788 + OH686_02975 0.22 -0.9
625,788 + OH686_02975 0.22 +0.0
625,788 + OH686_02975 0.22 +0.0
625,789 - OH686_02975 0.22 +0.5
625,789 - OH686_02975 0.22 -0.6
625,789 - OH686_02975 0.22 -0.1
625,789 - OH686_02975 0.22 +0.7
625,789 - OH686_02975 0.22 -0.3
625,995 + OH686_02975 0.72 +0.1
625,995 + OH686_02975 0.72 +0.3
625,995 + OH686_02975 0.72 +0.0
625,995 + OH686_02975 0.72 -0.6
625,995 + OH686_02975 0.72 +0.3
625,995 + OH686_02975 0.72 +0.4
625,995 + OH686_02975 0.72 +0.5
625,995 + OH686_02975 0.72 -0.2
625,995 + OH686_02975 0.72 -0.5
625,995 + OH686_02975 0.72 +1.1
625,995 + OH686_02975 0.72 +1.2
625,995 + OH686_02975 0.72 +0.8
625,995 + OH686_02975 0.72 -0.3
625,996 - OH686_02975 0.73 -0.1
625,996 - OH686_02975 0.73 +0.2
625,996 - OH686_02975 0.73 +0.4
625,996 - OH686_02975 0.73 +0.1
625,996 - OH686_02975 0.73 -0.7
625,996 - OH686_02975 0.73 -0.7
625,996 - OH686_02975 0.73 +0.1
625,996 - OH686_02975 0.73 +0.4
626,354 + -1.3
626,354 + +0.3
626,354 + +0.5
626,354 + +0.0
626,354 + +0.3
626,354 + +0.3
626,354 + +0.1
626,354 + +0.3
626,354 + -1.4
626,354 + -0.8
626,354 + -0.1
626,355 - -0.6
626,355 - -0.4
626,355 - -0.0
626,355 - +0.2
626,355 - -1.7
626,355 - +0.5
626,355 - -0.1
626,355 - -0.2
626,355 - -0.0
626,355 - +0.4
626,355 - +0.1
626,355 - +0.3
626,387 + -0.3
626,387 + -0.6
626,387 + +0.3
626,388 - -0.4
626,388 - -0.3
626,435 + OH686_02980 0.11 -0.4
626,436 - OH686_02980 0.11 -0.9
626,436 - OH686_02980 0.11 -0.6
626,501 + OH686_02980 0.19 -0.3
626,501 + OH686_02980 0.19 -0.8
626,501 + OH686_02980 0.19 +0.4
626,501 + OH686_02980 0.19 -0.3
626,501 + OH686_02980 0.19 -0.3
626,501 + OH686_02980 0.19 +0.1
626,501 + OH686_02980 0.19 -1.1
626,501 + OH686_02980 0.19 -0.7
626,501 + OH686_02980 0.19 -0.7
626,501 + OH686_02980 0.19 -0.0
626,501 + OH686_02980 0.19 +0.4
626,501 + OH686_02980 0.19 -0.1
626,501 + OH686_02980 0.19 -0.1
626,501 + OH686_02980 0.19 -0.3
626,501 + OH686_02980 0.19 +0.3
626,501 + OH686_02980 0.19 -1.3
626,502 - OH686_02980 0.19 +0.3
626,502 - OH686_02980 0.19 -0.3
626,502 - OH686_02980 0.19 -0.6
626,502 - OH686_02980 0.19 +0.6
626,502 - OH686_02980 0.19 -0.7
626,502 - OH686_02980 0.19 -0.6
626,502 - OH686_02980 0.19 -0.4
626,552 + OH686_02980 0.25 -2.3
626,552 + OH686_02980 0.25 +0.8
626,552 + OH686_02980 0.25 +0.9
626,553 - OH686_02980 0.25 +0.2
626,553 - OH686_02980 0.25 -0.9
626,553 - OH686_02980 0.25 +0.2
626,553 - OH686_02980 0.25 -0.4
626,553 - OH686_02980 0.25 +0.2
626,553 - OH686_02980 0.25 +0.8
626,553 - OH686_02980 0.25 +0.3
626,553 - OH686_02980 0.25 -0.2
626,642 + OH686_02980 0.35 +1.5
626,642 + OH686_02980 0.35 -0.9
626,642 + OH686_02980 0.35 +0.3
626,642 + OH686_02980 0.35 -0.6
626,643 - OH686_02980 0.36 -0.3
626,643 - OH686_02980 0.36 +0.9

Or see this region's nucleotide sequence