Strain Fitness in Pseudomonas sp. S08-1 around OH686_02945

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_02940 and OH686_02945 are separated by 13 nucleotidesOH686_02945 and OH686_02950 are separated by 59 nucleotidesOH686_02950 and OH686_02955 are separated by 46 nucleotides OH686_02940: OH686_02940 - Flagellar P-ring protein FlgI, at 619,538 to 620,638 _02940 OH686_02945: OH686_02945 - Flagellar L-ring protein FlgH, at 620,652 to 621,365 _02945 OH686_02950: OH686_02950 - flagellar basal-body rod protein FlgG, at 621,425 to 622,210 _02950 OH686_02955: OH686_02955 - Flagellar basal-body rod protein FlgF, at 622,257 to 623,000 _02955 Position (kb) 620 621 622Strain fitness (log2 ratio) -1 0 1at 619.929 kb on + strand, within OH686_02940at 619.929 kb on + strand, within OH686_02940at 619.930 kb on - strand, within OH686_02940at 619.930 kb on - strand, within OH686_02940at 619.930 kb on - strand, within OH686_02940at 620.235 kb on + strand, within OH686_02940at 620.235 kb on + strand, within OH686_02940at 620.235 kb on + strand, within OH686_02940at 620.235 kb on + strand, within OH686_02940at 620.235 kb on + strand, within OH686_02940at 620.236 kb on - strand, within OH686_02940at 620.236 kb on - strand, within OH686_02940at 620.236 kb on - strand, within OH686_02940at 620.523 kb on + strand, within OH686_02940at 620.524 kb on - strand, within OH686_02940at 620.645 kb on + strandat 620.646 kb on - strandat 620.734 kb on + strand, within OH686_02945at 620.734 kb on + strand, within OH686_02945at 620.734 kb on + strand, within OH686_02945at 620.734 kb on + strand, within OH686_02945at 620.734 kb on + strand, within OH686_02945at 620.734 kb on + strand, within OH686_02945at 620.734 kb on + strand, within OH686_02945at 620.735 kb on - strand, within OH686_02945at 620.735 kb on - strand, within OH686_02945at 620.735 kb on - strand, within OH686_02945at 620.735 kb on - strand, within OH686_02945at 620.735 kb on - strand, within OH686_02945at 620.969 kb on + strand, within OH686_02945at 620.977 kb on + strand, within OH686_02945at 620.977 kb on + strand, within OH686_02945at 621.190 kb on + strand, within OH686_02945at 621.191 kb on - strand, within OH686_02945at 621.191 kb on - strand, within OH686_02945at 621.191 kb on - strand, within OH686_02945at 621.217 kb on + strand, within OH686_02945at 621.217 kb on + strand, within OH686_02945at 621.217 kb on + strand, within OH686_02945at 621.274 kb on + strand, within OH686_02945at 621.275 kb on - strand, within OH686_02945at 621.277 kb on + strand, within OH686_02945at 621.278 kb on - strand, within OH686_02945at 621.278 kb on - strand, within OH686_02945at 621.373 kb on + strandat 621.373 kb on + strandat 621.373 kb on + strandat 621.373 kb on + strandat 621.374 kb on - strandat 621.374 kb on - strandat 621.374 kb on - strandat 621.374 kb on - strandat 621.395 kb on + strandat 621.395 kb on + strandat 621.395 kb on + strandat 621.395 kb on + strandat 621.396 kb on - strandat 621.396 kb on - strandat 621.426 kb on + strandat 621.427 kb on - strandat 621.440 kb on - strandat 621.493 kb on - strandat 621.730 kb on + strand, within OH686_02950at 621.730 kb on + strand, within OH686_02950at 621.731 kb on - strand, within OH686_02950at 621.731 kb on - strand, within OH686_02950at 621.731 kb on - strand, within OH686_02950at 621.870 kb on + strand, within OH686_02950at 622.074 kb on + strand, within OH686_02950at 622.075 kb on - strand, within OH686_02950at 622.075 kb on - strand, within OH686_02950at 622.210 kb on + strandat 622.210 kb on + strandat 622.210 kb on + strandat 622.210 kb on + strandat 622.210 kb on + strandat 622.210 kb on + strandat 622.210 kb on + strandat 622.211 kb on - strandat 622.211 kb on - strandat 622.211 kb on - strandat 622.211 kb on - strandat 622.211 kb on - strandat 622.258 kb on + strandat 622.258 kb on + strandat 622.259 kb on - strandat 622.259 kb on - strandat 622.259 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
619,929 + OH686_02940 0.36 +1.4
619,929 + OH686_02940 0.36 -0.0
619,930 - OH686_02940 0.36 +0.3
619,930 - OH686_02940 0.36 +0.9
619,930 - OH686_02940 0.36 +0.2
620,235 + OH686_02940 0.63 +0.6
620,235 + OH686_02940 0.63 +0.8
620,235 + OH686_02940 0.63 +0.9
620,235 + OH686_02940 0.63 +0.9
620,235 + OH686_02940 0.63 +0.3
620,236 - OH686_02940 0.63 +0.1
620,236 - OH686_02940 0.63 -0.1
620,236 - OH686_02940 0.63 +0.3
620,523 + OH686_02940 0.89 +0.1
620,524 - OH686_02940 0.90 +0.1
620,645 + +1.2
620,646 - +0.3
620,734 + OH686_02945 0.11 +1.1
620,734 + OH686_02945 0.11 +0.5
620,734 + OH686_02945 0.11 +0.3
620,734 + OH686_02945 0.11 +0.8
620,734 + OH686_02945 0.11 +0.6
620,734 + OH686_02945 0.11 +0.1
620,734 + OH686_02945 0.11 +0.9
620,735 - OH686_02945 0.12 -0.5
620,735 - OH686_02945 0.12 +1.0
620,735 - OH686_02945 0.12 +1.4
620,735 - OH686_02945 0.12 -1.4
620,735 - OH686_02945 0.12 +0.1
620,969 + OH686_02945 0.44 +0.8
620,977 + OH686_02945 0.46 +1.2
620,977 + OH686_02945 0.46 -0.1
621,190 + OH686_02945 0.75 +0.7
621,191 - OH686_02945 0.75 +0.7
621,191 - OH686_02945 0.75 -0.1
621,191 - OH686_02945 0.75 -0.1
621,217 + OH686_02945 0.79 +0.4
621,217 + OH686_02945 0.79 +0.2
621,217 + OH686_02945 0.79 +0.6
621,274 + OH686_02945 0.87 +1.7
621,275 - OH686_02945 0.87 -0.3
621,277 + OH686_02945 0.88 -0.1
621,278 - OH686_02945 0.88 +0.1
621,278 - OH686_02945 0.88 -0.1
621,373 + +0.1
621,373 + +0.8
621,373 + +0.4
621,373 + +0.6
621,374 - +0.4
621,374 - -0.0
621,374 - -0.3
621,374 - +0.7
621,395 + +0.1
621,395 + +0.4
621,395 + -0.3
621,395 + +0.7
621,396 - -0.1
621,396 - -0.9
621,426 + +1.6
621,427 - +1.2
621,440 - +0.5
621,493 - -0.1
621,730 + OH686_02950 0.39 -0.4
621,730 + OH686_02950 0.39 -0.5
621,731 - OH686_02950 0.39 -0.6
621,731 - OH686_02950 0.39 -0.4
621,731 - OH686_02950 0.39 +0.5
621,870 + OH686_02950 0.57 +0.4
622,074 + OH686_02950 0.83 +0.3
622,075 - OH686_02950 0.83 -1.3
622,075 - OH686_02950 0.83 +0.2
622,210 + +0.3
622,210 + -0.1
622,210 + +0.5
622,210 + +0.2
622,210 + +0.2
622,210 + +1.1
622,210 + +1.7
622,211 - +0.5
622,211 - +0.1
622,211 - -0.2
622,211 - +0.6
622,211 - +0.5
622,258 + +0.4
622,258 + +0.0
622,259 - +1.4
622,259 - -1.0
622,259 - -0.3

Or see this region's nucleotide sequence