Strain Fitness in Pseudomonas sp. S08-1 around OH686_02940

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02935 and OH686_02940 are separated by 11 nucleotidesOH686_02940 and OH686_02945 are separated by 13 nucleotidesOH686_02945 and OH686_02950 are separated by 59 nucleotides OH686_02935: OH686_02935 - flagellar rod assembly protein/muramidase FlgJ, at 618,369 to 619,526 _02935 OH686_02940: OH686_02940 - Flagellar P-ring protein FlgI, at 619,538 to 620,638 _02940 OH686_02945: OH686_02945 - Flagellar L-ring protein FlgH, at 620,652 to 621,365 _02945 OH686_02950: OH686_02950 - flagellar basal-body rod protein FlgG, at 621,425 to 622,210 _02950 Position (kb) 619 620 621Strain fitness (log2 ratio) -1 0 1 2at 618.539 kb on - strand, within OH686_02935at 618.556 kb on - strand, within OH686_02935at 618.568 kb on + strand, within OH686_02935at 618.568 kb on + strand, within OH686_02935at 618.568 kb on + strand, within OH686_02935at 618.568 kb on + strand, within OH686_02935at 618.568 kb on + strand, within OH686_02935at 618.568 kb on + strand, within OH686_02935at 618.568 kb on + strand, within OH686_02935at 618.568 kb on + strand, within OH686_02935at 618.568 kb on + strand, within OH686_02935at 618.568 kb on + strand, within OH686_02935at 618.569 kb on - strand, within OH686_02935at 618.569 kb on - strand, within OH686_02935at 618.569 kb on - strand, within OH686_02935at 618.569 kb on - strand, within OH686_02935at 618.569 kb on - strand, within OH686_02935at 618.569 kb on - strand, within OH686_02935at 618.569 kb on - strand, within OH686_02935at 618.589 kb on + strand, within OH686_02935at 618.589 kb on + strand, within OH686_02935at 618.589 kb on + strand, within OH686_02935at 618.589 kb on + strand, within OH686_02935at 618.590 kb on - strand, within OH686_02935at 618.599 kb on - strand, within OH686_02935at 618.643 kb on + strand, within OH686_02935at 618.643 kb on + strand, within OH686_02935at 618.643 kb on + strand, within OH686_02935at 618.643 kb on + strand, within OH686_02935at 618.643 kb on + strand, within OH686_02935at 618.644 kb on - strand, within OH686_02935at 618.644 kb on - strand, within OH686_02935at 618.644 kb on - strand, within OH686_02935at 618.719 kb on + strand, within OH686_02935at 618.719 kb on + strand, within OH686_02935at 618.719 kb on + strand, within OH686_02935at 618.720 kb on - strand, within OH686_02935at 618.720 kb on - strand, within OH686_02935at 618.788 kb on - strand, within OH686_02935at 619.029 kb on + strand, within OH686_02935at 619.030 kb on - strand, within OH686_02935at 619.030 kb on - strand, within OH686_02935at 619.030 kb on - strand, within OH686_02935at 619.309 kb on + strand, within OH686_02935at 619.309 kb on + strand, within OH686_02935at 619.309 kb on + strand, within OH686_02935at 619.309 kb on + strand, within OH686_02935at 619.310 kb on - strand, within OH686_02935at 619.310 kb on - strand, within OH686_02935at 619.310 kb on - strand, within OH686_02935at 619.486 kb on + strandat 619.486 kb on + strandat 619.486 kb on + strandat 619.486 kb on + strandat 619.486 kb on + strandat 619.487 kb on - strandat 619.487 kb on - strandat 619.643 kb on + strandat 619.643 kb on + strandat 619.643 kb on + strandat 619.643 kb on + strandat 619.644 kb on - strandat 619.644 kb on - strandat 619.644 kb on - strandat 619.929 kb on + strand, within OH686_02940at 619.929 kb on + strand, within OH686_02940at 619.930 kb on - strand, within OH686_02940at 619.930 kb on - strand, within OH686_02940at 619.930 kb on - strand, within OH686_02940at 620.235 kb on + strand, within OH686_02940at 620.235 kb on + strand, within OH686_02940at 620.235 kb on + strand, within OH686_02940at 620.235 kb on + strand, within OH686_02940at 620.235 kb on + strand, within OH686_02940at 620.236 kb on - strand, within OH686_02940at 620.236 kb on - strand, within OH686_02940at 620.236 kb on - strand, within OH686_02940at 620.523 kb on + strand, within OH686_02940at 620.524 kb on - strand, within OH686_02940at 620.645 kb on + strandat 620.646 kb on - strandat 620.734 kb on + strand, within OH686_02945at 620.734 kb on + strand, within OH686_02945at 620.734 kb on + strand, within OH686_02945at 620.734 kb on + strand, within OH686_02945at 620.734 kb on + strand, within OH686_02945at 620.734 kb on + strand, within OH686_02945at 620.734 kb on + strand, within OH686_02945at 620.735 kb on - strand, within OH686_02945at 620.735 kb on - strand, within OH686_02945at 620.735 kb on - strand, within OH686_02945at 620.735 kb on - strand, within OH686_02945at 620.735 kb on - strand, within OH686_02945at 620.969 kb on + strand, within OH686_02945at 620.977 kb on + strand, within OH686_02945at 620.977 kb on + strand, within OH686_02945at 621.190 kb on + strand, within OH686_02945at 621.191 kb on - strand, within OH686_02945at 621.191 kb on - strand, within OH686_02945at 621.191 kb on - strand, within OH686_02945at 621.217 kb on + strand, within OH686_02945at 621.217 kb on + strand, within OH686_02945at 621.217 kb on + strand, within OH686_02945at 621.274 kb on + strand, within OH686_02945at 621.275 kb on - strand, within OH686_02945at 621.277 kb on + strand, within OH686_02945at 621.278 kb on - strand, within OH686_02945at 621.278 kb on - strand, within OH686_02945at 621.373 kb on + strandat 621.373 kb on + strandat 621.373 kb on + strandat 621.373 kb on + strandat 621.374 kb on - strandat 621.374 kb on - strandat 621.374 kb on - strandat 621.374 kb on - strandat 621.395 kb on + strandat 621.395 kb on + strandat 621.395 kb on + strandat 621.395 kb on + strandat 621.396 kb on - strandat 621.396 kb on - strandat 621.426 kb on + strandat 621.427 kb on - strandat 621.440 kb on - strandat 621.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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618,539 - OH686_02935 0.15 +1.0
618,556 - OH686_02935 0.16 +0.4
618,568 + OH686_02935 0.17 +0.3
618,568 + OH686_02935 0.17 +0.2
618,568 + OH686_02935 0.17 +0.4
618,568 + OH686_02935 0.17 +0.3
618,568 + OH686_02935 0.17 +0.0
618,568 + OH686_02935 0.17 -0.4
618,568 + OH686_02935 0.17 +0.5
618,568 + OH686_02935 0.17 +0.4
618,568 + OH686_02935 0.17 -0.8
618,568 + OH686_02935 0.17 +0.4
618,569 - OH686_02935 0.17 +0.3
618,569 - OH686_02935 0.17 +0.1
618,569 - OH686_02935 0.17 -0.1
618,569 - OH686_02935 0.17 +0.3
618,569 - OH686_02935 0.17 -0.7
618,569 - OH686_02935 0.17 +2.6
618,569 - OH686_02935 0.17 +0.9
618,589 + OH686_02935 0.19 -0.1
618,589 + OH686_02935 0.19 -0.2
618,589 + OH686_02935 0.19 +0.2
618,589 + OH686_02935 0.19 +1.1
618,590 - OH686_02935 0.19 -0.5
618,599 - OH686_02935 0.20 -0.1
618,643 + OH686_02935 0.24 +0.4
618,643 + OH686_02935 0.24 +0.4
618,643 + OH686_02935 0.24 +0.9
618,643 + OH686_02935 0.24 +0.8
618,643 + OH686_02935 0.24 -1.0
618,644 - OH686_02935 0.24 +0.0
618,644 - OH686_02935 0.24 +0.3
618,644 - OH686_02935 0.24 +0.3
618,719 + OH686_02935 0.30 +0.3
618,719 + OH686_02935 0.30 +0.5
618,719 + OH686_02935 0.30 +1.0
618,720 - OH686_02935 0.30 +0.7
618,720 - OH686_02935 0.30 -0.2
618,788 - OH686_02935 0.36 +0.5
619,029 + OH686_02935 0.57 +0.2
619,030 - OH686_02935 0.57 -0.3
619,030 - OH686_02935 0.57 +0.7
619,030 - OH686_02935 0.57 -0.3
619,309 + OH686_02935 0.81 +1.0
619,309 + OH686_02935 0.81 +0.9
619,309 + OH686_02935 0.81 +0.4
619,309 + OH686_02935 0.81 +0.6
619,310 - OH686_02935 0.81 +0.0
619,310 - OH686_02935 0.81 +0.4
619,310 - OH686_02935 0.81 +0.6
619,486 + -0.0
619,486 + -0.8
619,486 + +0.7
619,486 + +0.7
619,486 + -0.2
619,487 - +1.1
619,487 - +0.3
619,643 + +0.5
619,643 + +0.7
619,643 + +0.2
619,643 + +0.4
619,644 - -0.5
619,644 - +0.0
619,644 - +0.2
619,929 + OH686_02940 0.36 +1.4
619,929 + OH686_02940 0.36 -0.0
619,930 - OH686_02940 0.36 +0.3
619,930 - OH686_02940 0.36 +0.9
619,930 - OH686_02940 0.36 +0.2
620,235 + OH686_02940 0.63 +0.6
620,235 + OH686_02940 0.63 +0.8
620,235 + OH686_02940 0.63 +0.9
620,235 + OH686_02940 0.63 +0.9
620,235 + OH686_02940 0.63 +0.3
620,236 - OH686_02940 0.63 +0.1
620,236 - OH686_02940 0.63 -0.1
620,236 - OH686_02940 0.63 +0.3
620,523 + OH686_02940 0.89 +0.1
620,524 - OH686_02940 0.90 +0.1
620,645 + +1.2
620,646 - +0.3
620,734 + OH686_02945 0.11 +1.1
620,734 + OH686_02945 0.11 +0.5
620,734 + OH686_02945 0.11 +0.3
620,734 + OH686_02945 0.11 +0.8
620,734 + OH686_02945 0.11 +0.6
620,734 + OH686_02945 0.11 +0.1
620,734 + OH686_02945 0.11 +0.9
620,735 - OH686_02945 0.12 -0.5
620,735 - OH686_02945 0.12 +1.0
620,735 - OH686_02945 0.12 +1.4
620,735 - OH686_02945 0.12 -1.4
620,735 - OH686_02945 0.12 +0.1
620,969 + OH686_02945 0.44 +0.8
620,977 + OH686_02945 0.46 +1.2
620,977 + OH686_02945 0.46 -0.1
621,190 + OH686_02945 0.75 +0.7
621,191 - OH686_02945 0.75 +0.7
621,191 - OH686_02945 0.75 -0.1
621,191 - OH686_02945 0.75 -0.1
621,217 + OH686_02945 0.79 +0.4
621,217 + OH686_02945 0.79 +0.2
621,217 + OH686_02945 0.79 +0.6
621,274 + OH686_02945 0.87 +1.7
621,275 - OH686_02945 0.87 -0.3
621,277 + OH686_02945 0.88 -0.1
621,278 - OH686_02945 0.88 +0.1
621,278 - OH686_02945 0.88 -0.1
621,373 + +0.1
621,373 + +0.8
621,373 + +0.4
621,373 + +0.6
621,374 - +0.4
621,374 - -0.0
621,374 - -0.3
621,374 - +0.7
621,395 + +0.1
621,395 + +0.4
621,395 + -0.3
621,395 + +0.7
621,396 - -0.1
621,396 - -0.9
621,426 + +1.6
621,427 - +1.2
621,440 - +0.5
621,493 - -0.1

Or see this region's nucleotide sequence