Strain Fitness in Pseudomonas sp. S08-1 around OH686_02850

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02845 and OH686_02850 are separated by 4 nucleotidesOH686_02850 and OH686_02855 are separated by 158 nucleotides OH686_02845: OH686_02845 - Flagellar two-component response regulator FleR, at 596,523 to 597,980 _02845 OH686_02850: OH686_02850 - Flagellar sensor histidine kinase FleS, at 597,985 to 599,202 _02850 OH686_02855: OH686_02855 - Flagellar regulatory protein FleQ, at 599,361 to 600,836 _02855 Position (kb) 597 598 599 600Strain fitness (log2 ratio) -1 0 1 2at 597.116 kb on - strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.472 kb on + strand, within OH686_02845at 597.472 kb on + strand, within OH686_02845at 597.472 kb on + strand, within OH686_02845at 597.472 kb on + strand, within OH686_02845at 597.472 kb on + strand, within OH686_02845at 597.472 kb on + strand, within OH686_02845at 597.473 kb on - strand, within OH686_02845at 597.473 kb on - strand, within OH686_02845at 597.473 kb on - strand, within OH686_02845at 597.473 kb on - strand, within OH686_02845at 597.473 kb on - strand, within OH686_02845at 597.473 kb on - strand, within OH686_02845at 597.640 kb on - strand, within OH686_02845at 597.640 kb on - strand, within OH686_02845at 597.640 kb on - strand, within OH686_02845at 597.683 kb on - strand, within OH686_02845at 597.683 kb on - strand, within OH686_02845at 597.733 kb on + strand, within OH686_02845at 597.733 kb on + strand, within OH686_02845at 597.733 kb on + strand, within OH686_02845at 597.733 kb on + strand, within OH686_02845at 597.733 kb on + strand, within OH686_02845at 597.734 kb on - strand, within OH686_02845at 597.986 kb on + strandat 597.986 kb on + strandat 597.986 kb on + strandat 597.986 kb on + strandat 597.986 kb on + strandat 597.986 kb on + strandat 597.986 kb on + strandat 597.987 kb on - strandat 597.987 kb on - strandat 597.987 kb on - strandat 597.987 kb on - strandat 597.987 kb on - strandat 597.987 kb on - strandat 598.177 kb on + strand, within OH686_02850at 598.177 kb on + strand, within OH686_02850at 598.177 kb on + strand, within OH686_02850at 598.177 kb on + strand, within OH686_02850at 598.177 kb on + strand, within OH686_02850at 598.178 kb on - strand, within OH686_02850at 598.178 kb on - strand, within OH686_02850at 598.178 kb on - strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.315 kb on + strand, within OH686_02850at 598.316 kb on - strand, within OH686_02850at 598.316 kb on - strand, within OH686_02850at 598.471 kb on + strand, within OH686_02850at 598.472 kb on - strand, within OH686_02850at 598.583 kb on + strand, within OH686_02850at 598.584 kb on - strand, within OH686_02850at 598.584 kb on - strand, within OH686_02850at 598.584 kb on - strand, within OH686_02850at 598.585 kb on + strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.786 kb on + strand, within OH686_02850at 598.786 kb on + strand, within OH686_02850at 598.786 kb on + strand, within OH686_02850at 598.787 kb on - strand, within OH686_02850at 598.787 kb on - strand, within OH686_02850at 598.787 kb on - strand, within OH686_02850at 598.787 kb on - strand, within OH686_02850at 598.852 kb on + strand, within OH686_02850at 598.853 kb on - strand, within OH686_02850at 598.853 kb on - strand, within OH686_02850at 599.066 kb on + strand, within OH686_02850at 599.066 kb on + strand, within OH686_02850at 599.066 kb on + strand, within OH686_02850at 599.066 kb on + strand, within OH686_02850at 599.066 kb on + strand, within OH686_02850at 599.066 kb on + strand, within OH686_02850at 599.066 kb on + strand, within OH686_02850at 599.066 kb on + strand, within OH686_02850at 599.066 kb on + strand, within OH686_02850at 599.066 kb on + strand, within OH686_02850at 599.067 kb on - strand, within OH686_02850at 599.067 kb on - strand, within OH686_02850at 599.067 kb on - strand, within OH686_02850at 599.067 kb on - strand, within OH686_02850at 599.067 kb on - strand, within OH686_02850at 599.067 kb on - strand, within OH686_02850at 599.255 kb on - strandat 599.286 kb on + strandat 599.339 kb on - strandat 599.404 kb on + strandat 599.404 kb on + strandat 599.404 kb on + strandat 599.404 kb on + strandat 599.405 kb on - strandat 599.470 kb on - strandat 599.527 kb on + strand, within OH686_02855at 599.527 kb on + strand, within OH686_02855at 599.527 kb on + strand, within OH686_02855at 599.528 kb on - strand, within OH686_02855at 599.528 kb on - strand, within OH686_02855at 599.528 kb on - strand, within OH686_02855at 599.528 kb on - strand, within OH686_02855at 599.528 kb on - strand, within OH686_02855at 599.528 kb on - strand, within OH686_02855at 599.574 kb on + strand, within OH686_02855at 599.574 kb on + strand, within OH686_02855at 599.575 kb on - strand, within OH686_02855at 599.575 kb on - strand, within OH686_02855at 599.704 kb on + strand, within OH686_02855at 599.923 kb on + strand, within OH686_02855at 599.924 kb on - strand, within OH686_02855at 599.926 kb on + strand, within OH686_02855at 599.926 kb on + strand, within OH686_02855at 599.926 kb on + strand, within OH686_02855at 599.926 kb on + strand, within OH686_02855at 599.927 kb on - strand, within OH686_02855at 599.927 kb on - strand, within OH686_02855at 599.927 kb on - strand, within OH686_02855at 599.927 kb on - strand, within OH686_02855at 599.927 kb on - strand, within OH686_02855at 599.927 kb on - strand, within OH686_02855at 599.927 kb on - strand, within OH686_02855at 599.927 kb on - strand, within OH686_02855at 599.927 kb on - strand, within OH686_02855at 599.927 kb on - strand, within OH686_02855at 599.927 kb on - strand, within OH686_02855at 599.927 kb on - strand, within OH686_02855at 599.927 kb on - strand, within OH686_02855

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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597,116 - OH686_02845 0.41 +0.9
597,118 + OH686_02845 0.41 +0.6
597,118 + OH686_02845 0.41 +0.5
597,118 + OH686_02845 0.41 +1.0
597,118 + OH686_02845 0.41 +0.9
597,118 + OH686_02845 0.41 -0.0
597,118 + OH686_02845 0.41 +0.4
597,118 + OH686_02845 0.41 -0.1
597,118 + OH686_02845 0.41 +0.3
597,118 + OH686_02845 0.41 -0.3
597,119 - OH686_02845 0.41 -0.1
597,119 - OH686_02845 0.41 +0.9
597,119 - OH686_02845 0.41 +0.0
597,119 - OH686_02845 0.41 +0.6
597,119 - OH686_02845 0.41 +0.0
597,119 - OH686_02845 0.41 +0.5
597,119 - OH686_02845 0.41 +0.3
597,119 - OH686_02845 0.41 +0.7
597,472 + OH686_02845 0.65 +0.4
597,472 + OH686_02845 0.65 -1.0
597,472 + OH686_02845 0.65 -0.8
597,472 + OH686_02845 0.65 +0.5
597,472 + OH686_02845 0.65 +0.7
597,472 + OH686_02845 0.65 +1.4
597,473 - OH686_02845 0.65 +0.4
597,473 - OH686_02845 0.65 +0.8
597,473 - OH686_02845 0.65 +0.4
597,473 - OH686_02845 0.65 +0.5
597,473 - OH686_02845 0.65 -0.1
597,473 - OH686_02845 0.65 +0.3
597,640 - OH686_02845 0.77 +0.9
597,640 - OH686_02845 0.77 +0.6
597,640 - OH686_02845 0.77 -0.5
597,683 - OH686_02845 0.80 +0.2
597,683 - OH686_02845 0.80 +0.6
597,733 + OH686_02845 0.83 +0.2
597,733 + OH686_02845 0.83 +0.2
597,733 + OH686_02845 0.83 -0.3
597,733 + OH686_02845 0.83 +0.1
597,733 + OH686_02845 0.83 -1.7
597,734 - OH686_02845 0.83 +0.4
597,986 + +0.3
597,986 + -0.1
597,986 + +1.4
597,986 + +0.7
597,986 + +0.2
597,986 + -0.0
597,986 + +0.3
597,987 - +0.7
597,987 - +0.6
597,987 - +0.6
597,987 - +0.1
597,987 - +0.4
597,987 - +0.6
598,177 + OH686_02850 0.16 +0.3
598,177 + OH686_02850 0.16 +0.6
598,177 + OH686_02850 0.16 +1.4
598,177 + OH686_02850 0.16 +0.1
598,177 + OH686_02850 0.16 +0.7
598,178 - OH686_02850 0.16 +0.9
598,178 - OH686_02850 0.16 -0.2
598,178 - OH686_02850 0.16 +0.0
598,238 + OH686_02850 0.21 -0.1
598,238 + OH686_02850 0.21 +0.3
598,238 + OH686_02850 0.21 +0.7
598,238 + OH686_02850 0.21 +0.6
598,238 + OH686_02850 0.21 -0.1
598,238 + OH686_02850 0.21 +0.4
598,238 + OH686_02850 0.21 -0.2
598,238 + OH686_02850 0.21 +1.3
598,238 + OH686_02850 0.21 +0.4
598,239 - OH686_02850 0.21 +0.3
598,239 - OH686_02850 0.21 -0.6
598,239 - OH686_02850 0.21 +0.1
598,239 - OH686_02850 0.21 +0.3
598,239 - OH686_02850 0.21 -0.3
598,239 - OH686_02850 0.21 +0.8
598,239 - OH686_02850 0.21 -0.2
598,239 - OH686_02850 0.21 +0.2
598,239 - OH686_02850 0.21 +0.1
598,239 - OH686_02850 0.21 +0.5
598,315 + OH686_02850 0.27 -0.3
598,316 - OH686_02850 0.27 +0.5
598,316 - OH686_02850 0.27 +0.4
598,471 + OH686_02850 0.40 +0.1
598,472 - OH686_02850 0.40 -0.5
598,583 + OH686_02850 0.49 -0.1
598,584 - OH686_02850 0.49 +0.7
598,584 - OH686_02850 0.49 -0.0
598,584 - OH686_02850 0.49 +1.2
598,585 + OH686_02850 0.49 +0.5
598,586 - OH686_02850 0.49 +0.6
598,586 - OH686_02850 0.49 +0.4
598,586 - OH686_02850 0.49 +0.5
598,586 - OH686_02850 0.49 +0.2
598,586 - OH686_02850 0.49 +1.0
598,586 - OH686_02850 0.49 +0.5
598,586 - OH686_02850 0.49 +1.2
598,586 - OH686_02850 0.49 +0.7
598,786 + OH686_02850 0.66 +0.2
598,786 + OH686_02850 0.66 +0.2
598,786 + OH686_02850 0.66 +0.5
598,787 - OH686_02850 0.66 -0.1
598,787 - OH686_02850 0.66 +0.8
598,787 - OH686_02850 0.66 +0.8
598,787 - OH686_02850 0.66 +0.7
598,852 + OH686_02850 0.71 +0.2
598,853 - OH686_02850 0.71 +2.0
598,853 - OH686_02850 0.71 +0.1
599,066 + OH686_02850 0.89 +0.3
599,066 + OH686_02850 0.89 +0.6
599,066 + OH686_02850 0.89 +0.7
599,066 + OH686_02850 0.89 +0.3
599,066 + OH686_02850 0.89 +0.6
599,066 + OH686_02850 0.89 +0.2
599,066 + OH686_02850 0.89 +0.4
599,066 + OH686_02850 0.89 +0.3
599,066 + OH686_02850 0.89 +0.9
599,066 + OH686_02850 0.89 +0.1
599,067 - OH686_02850 0.89 +0.3
599,067 - OH686_02850 0.89 -0.6
599,067 - OH686_02850 0.89 +0.7
599,067 - OH686_02850 0.89 -1.6
599,067 - OH686_02850 0.89 +0.2
599,067 - OH686_02850 0.89 +0.4
599,255 - +0.5
599,286 + +0.2
599,339 - -0.8
599,404 + +1.0
599,404 + +0.9
599,404 + +0.3
599,404 + -0.1
599,405 - +0.5
599,470 - +0.2
599,527 + OH686_02855 0.11 +1.3
599,527 + OH686_02855 0.11 +0.9
599,527 + OH686_02855 0.11 +0.6
599,528 - OH686_02855 0.11 +0.5
599,528 - OH686_02855 0.11 +0.4
599,528 - OH686_02855 0.11 +0.4
599,528 - OH686_02855 0.11 +0.9
599,528 - OH686_02855 0.11 -0.7
599,528 - OH686_02855 0.11 -0.6
599,574 + OH686_02855 0.14 +1.6
599,574 + OH686_02855 0.14 -0.3
599,575 - OH686_02855 0.14 +0.9
599,575 - OH686_02855 0.14 +0.5
599,704 + OH686_02855 0.23 +0.7
599,923 + OH686_02855 0.38 +0.9
599,924 - OH686_02855 0.38 +0.6
599,926 + OH686_02855 0.38 -0.8
599,926 + OH686_02855 0.38 +1.7
599,926 + OH686_02855 0.38 +1.5
599,926 + OH686_02855 0.38 +0.0
599,927 - OH686_02855 0.38 +0.3
599,927 - OH686_02855 0.38 +0.3
599,927 - OH686_02855 0.38 +0.3
599,927 - OH686_02855 0.38 +0.2
599,927 - OH686_02855 0.38 +1.3
599,927 - OH686_02855 0.38 -0.3
599,927 - OH686_02855 0.38 -0.3
599,927 - OH686_02855 0.38 -0.8
599,927 - OH686_02855 0.38 -0.2
599,927 - OH686_02855 0.38 +0.1
599,927 - OH686_02855 0.38 +0.3
599,927 - OH686_02855 0.38 +0.5
599,927 - OH686_02855 0.38 -0.1

Or see this region's nucleotide sequence