Strain Fitness in Pseudomonas sp. S08-1 around OH686_02845

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02835 and OH686_02840 are separated by 17 nucleotidesOH686_02840 and OH686_02845 are separated by 152 nucleotidesOH686_02845 and OH686_02850 are separated by 4 nucleotides OH686_02835: OH686_02835 - flagellar M-ring protein FliF, at 594,224 to 596,020 _02835 OH686_02840: OH686_02840 - flagellar hook-basal body complex protein FliE, at 596,038 to 596,370 _02840 OH686_02845: OH686_02845 - Flagellar two-component response regulator FleR, at 596,523 to 597,980 _02845 OH686_02850: OH686_02850 - Flagellar sensor histidine kinase FleS, at 597,985 to 599,202 _02850 Position (kb) 596 597 598Strain fitness (log2 ratio) -1 0 1 2at 595.606 kb on + strand, within OH686_02835at 595.749 kb on + strand, within OH686_02835at 595.750 kb on - strand, within OH686_02835at 595.750 kb on - strand, within OH686_02835at 595.827 kb on + strand, within OH686_02835at 595.827 kb on + strand, within OH686_02835at 595.827 kb on + strand, within OH686_02835at 595.828 kb on - strand, within OH686_02835at 595.828 kb on - strand, within OH686_02835at 595.828 kb on - strand, within OH686_02835at 595.828 kb on - strand, within OH686_02835at 595.828 kb on - strand, within OH686_02835at 595.994 kb on + strandat 595.994 kb on + strandat 595.994 kb on + strandat 596.039 kb on + strandat 596.040 kb on - strandat 596.066 kb on + strandat 596.067 kb on - strandat 596.067 kb on - strandat 596.067 kb on - strandat 596.086 kb on - strand, within OH686_02840at 596.414 kb on + strandat 596.415 kb on - strandat 596.415 kb on - strandat 596.425 kb on - strandat 596.486 kb on + strandat 596.486 kb on + strandat 596.486 kb on + strandat 596.486 kb on + strandat 596.487 kb on - strandat 596.487 kb on - strandat 596.487 kb on - strandat 596.524 kb on + strandat 596.524 kb on + strandat 596.524 kb on + strandat 596.525 kb on - strandat 596.525 kb on - strandat 596.534 kb on - strandat 596.539 kb on + strandat 596.539 kb on + strandat 596.539 kb on + strandat 596.539 kb on + strandat 596.539 kb on + strandat 596.540 kb on - strandat 596.540 kb on - strandat 596.540 kb on - strandat 596.540 kb on - strandat 596.540 kb on - strandat 596.540 kb on - strandat 596.540 kb on - strandat 596.540 kb on - strandat 596.584 kb on + strandat 596.585 kb on - strandat 596.585 kb on - strandat 596.657 kb on + strandat 596.657 kb on + strandat 596.964 kb on + strand, within OH686_02845at 596.964 kb on + strand, within OH686_02845at 596.964 kb on + strand, within OH686_02845at 596.964 kb on + strand, within OH686_02845at 596.965 kb on - strand, within OH686_02845at 596.965 kb on - strand, within OH686_02845at 596.965 kb on - strand, within OH686_02845at 596.965 kb on - strand, within OH686_02845at 596.965 kb on - strand, within OH686_02845at 596.965 kb on - strand, within OH686_02845at 597.116 kb on - strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.118 kb on + strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.119 kb on - strand, within OH686_02845at 597.472 kb on + strand, within OH686_02845at 597.472 kb on + strand, within OH686_02845at 597.472 kb on + strand, within OH686_02845at 597.472 kb on + strand, within OH686_02845at 597.472 kb on + strand, within OH686_02845at 597.472 kb on + strand, within OH686_02845at 597.473 kb on - strand, within OH686_02845at 597.473 kb on - strand, within OH686_02845at 597.473 kb on - strand, within OH686_02845at 597.473 kb on - strand, within OH686_02845at 597.473 kb on - strand, within OH686_02845at 597.473 kb on - strand, within OH686_02845at 597.640 kb on - strand, within OH686_02845at 597.640 kb on - strand, within OH686_02845at 597.640 kb on - strand, within OH686_02845at 597.683 kb on - strand, within OH686_02845at 597.683 kb on - strand, within OH686_02845at 597.733 kb on + strand, within OH686_02845at 597.733 kb on + strand, within OH686_02845at 597.733 kb on + strand, within OH686_02845at 597.733 kb on + strand, within OH686_02845at 597.733 kb on + strand, within OH686_02845at 597.734 kb on - strand, within OH686_02845at 597.986 kb on + strandat 597.986 kb on + strandat 597.986 kb on + strandat 597.986 kb on + strandat 597.986 kb on + strandat 597.986 kb on + strandat 597.986 kb on + strandat 597.987 kb on - strandat 597.987 kb on - strandat 597.987 kb on - strandat 597.987 kb on - strandat 597.987 kb on - strandat 597.987 kb on - strandat 598.177 kb on + strand, within OH686_02850at 598.177 kb on + strand, within OH686_02850at 598.177 kb on + strand, within OH686_02850at 598.177 kb on + strand, within OH686_02850at 598.177 kb on + strand, within OH686_02850at 598.178 kb on - strand, within OH686_02850at 598.178 kb on - strand, within OH686_02850at 598.178 kb on - strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.238 kb on + strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.239 kb on - strand, within OH686_02850at 598.315 kb on + strand, within OH686_02850at 598.316 kb on - strand, within OH686_02850at 598.316 kb on - strand, within OH686_02850at 598.471 kb on + strand, within OH686_02850at 598.472 kb on - strand, within OH686_02850at 598.583 kb on + strand, within OH686_02850at 598.584 kb on - strand, within OH686_02850at 598.584 kb on - strand, within OH686_02850at 598.584 kb on - strand, within OH686_02850at 598.585 kb on + strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.586 kb on - strand, within OH686_02850at 598.786 kb on + strand, within OH686_02850at 598.786 kb on + strand, within OH686_02850at 598.786 kb on + strand, within OH686_02850at 598.787 kb on - strand, within OH686_02850at 598.787 kb on - strand, within OH686_02850at 598.787 kb on - strand, within OH686_02850at 598.787 kb on - strand, within OH686_02850at 598.852 kb on + strand, within OH686_02850at 598.853 kb on - strand, within OH686_02850at 598.853 kb on - strand, within OH686_02850

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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595,606 + OH686_02835 0.77 +0.1
595,749 + OH686_02835 0.85 +0.3
595,750 - OH686_02835 0.85 +0.8
595,750 - OH686_02835 0.85 +0.4
595,827 + OH686_02835 0.89 +0.4
595,827 + OH686_02835 0.89 +0.4
595,827 + OH686_02835 0.89 +0.3
595,828 - OH686_02835 0.89 +1.0
595,828 - OH686_02835 0.89 +0.7
595,828 - OH686_02835 0.89 -0.3
595,828 - OH686_02835 0.89 +0.0
595,828 - OH686_02835 0.89 -0.1
595,994 + +0.7
595,994 + +1.2
595,994 + -0.1
596,039 + +0.5
596,040 - +0.3
596,066 + -0.5
596,067 - -0.3
596,067 - +0.2
596,067 - +1.3
596,086 - OH686_02840 0.14 +0.6
596,414 + +0.8
596,415 - -0.3
596,415 - -1.0
596,425 - +0.0
596,486 + -0.1
596,486 + +0.7
596,486 + +1.0
596,486 + -1.1
596,487 - -0.3
596,487 - -0.1
596,487 - +0.7
596,524 + +0.0
596,524 + -0.1
596,524 + -1.0
596,525 - +2.0
596,525 - -0.6
596,534 - +0.3
596,539 + +0.4
596,539 + -0.0
596,539 + -0.7
596,539 + -0.1
596,539 + +0.8
596,540 - -0.7
596,540 - +0.4
596,540 - -0.7
596,540 - -1.0
596,540 - +0.0
596,540 - -0.5
596,540 - -0.2
596,540 - -0.3
596,584 + -0.1
596,585 - +0.4
596,585 - +0.2
596,657 + +0.3
596,657 + -0.6
596,964 + OH686_02845 0.30 +0.8
596,964 + OH686_02845 0.30 -1.3
596,964 + OH686_02845 0.30 +0.2
596,964 + OH686_02845 0.30 -0.2
596,965 - OH686_02845 0.30 +0.7
596,965 - OH686_02845 0.30 +0.5
596,965 - OH686_02845 0.30 -0.5
596,965 - OH686_02845 0.30 -0.1
596,965 - OH686_02845 0.30 +0.7
596,965 - OH686_02845 0.30 -0.5
597,116 - OH686_02845 0.41 +0.9
597,118 + OH686_02845 0.41 +0.6
597,118 + OH686_02845 0.41 +0.5
597,118 + OH686_02845 0.41 +1.0
597,118 + OH686_02845 0.41 +0.9
597,118 + OH686_02845 0.41 -0.0
597,118 + OH686_02845 0.41 +0.4
597,118 + OH686_02845 0.41 -0.1
597,118 + OH686_02845 0.41 +0.3
597,118 + OH686_02845 0.41 -0.3
597,119 - OH686_02845 0.41 -0.1
597,119 - OH686_02845 0.41 +0.9
597,119 - OH686_02845 0.41 +0.0
597,119 - OH686_02845 0.41 +0.6
597,119 - OH686_02845 0.41 +0.0
597,119 - OH686_02845 0.41 +0.5
597,119 - OH686_02845 0.41 +0.3
597,119 - OH686_02845 0.41 +0.7
597,472 + OH686_02845 0.65 +0.4
597,472 + OH686_02845 0.65 -1.0
597,472 + OH686_02845 0.65 -0.8
597,472 + OH686_02845 0.65 +0.5
597,472 + OH686_02845 0.65 +0.7
597,472 + OH686_02845 0.65 +1.4
597,473 - OH686_02845 0.65 +0.4
597,473 - OH686_02845 0.65 +0.8
597,473 - OH686_02845 0.65 +0.4
597,473 - OH686_02845 0.65 +0.5
597,473 - OH686_02845 0.65 -0.1
597,473 - OH686_02845 0.65 +0.3
597,640 - OH686_02845 0.77 +0.9
597,640 - OH686_02845 0.77 +0.6
597,640 - OH686_02845 0.77 -0.5
597,683 - OH686_02845 0.80 +0.2
597,683 - OH686_02845 0.80 +0.6
597,733 + OH686_02845 0.83 +0.2
597,733 + OH686_02845 0.83 +0.2
597,733 + OH686_02845 0.83 -0.3
597,733 + OH686_02845 0.83 +0.1
597,733 + OH686_02845 0.83 -1.7
597,734 - OH686_02845 0.83 +0.4
597,986 + +0.3
597,986 + -0.1
597,986 + +1.4
597,986 + +0.7
597,986 + +0.2
597,986 + -0.0
597,986 + +0.3
597,987 - +0.7
597,987 - +0.6
597,987 - +0.6
597,987 - +0.1
597,987 - +0.4
597,987 - +0.6
598,177 + OH686_02850 0.16 +0.3
598,177 + OH686_02850 0.16 +0.6
598,177 + OH686_02850 0.16 +1.4
598,177 + OH686_02850 0.16 +0.1
598,177 + OH686_02850 0.16 +0.7
598,178 - OH686_02850 0.16 +0.9
598,178 - OH686_02850 0.16 -0.2
598,178 - OH686_02850 0.16 +0.0
598,238 + OH686_02850 0.21 -0.1
598,238 + OH686_02850 0.21 +0.3
598,238 + OH686_02850 0.21 +0.7
598,238 + OH686_02850 0.21 +0.6
598,238 + OH686_02850 0.21 -0.1
598,238 + OH686_02850 0.21 +0.4
598,238 + OH686_02850 0.21 -0.2
598,238 + OH686_02850 0.21 +1.3
598,238 + OH686_02850 0.21 +0.4
598,239 - OH686_02850 0.21 +0.3
598,239 - OH686_02850 0.21 -0.6
598,239 - OH686_02850 0.21 +0.1
598,239 - OH686_02850 0.21 +0.3
598,239 - OH686_02850 0.21 -0.3
598,239 - OH686_02850 0.21 +0.8
598,239 - OH686_02850 0.21 -0.2
598,239 - OH686_02850 0.21 +0.2
598,239 - OH686_02850 0.21 +0.1
598,239 - OH686_02850 0.21 +0.5
598,315 + OH686_02850 0.27 -0.3
598,316 - OH686_02850 0.27 +0.5
598,316 - OH686_02850 0.27 +0.4
598,471 + OH686_02850 0.40 +0.1
598,472 - OH686_02850 0.40 -0.5
598,583 + OH686_02850 0.49 -0.1
598,584 - OH686_02850 0.49 +0.7
598,584 - OH686_02850 0.49 -0.0
598,584 - OH686_02850 0.49 +1.2
598,585 + OH686_02850 0.49 +0.5
598,586 - OH686_02850 0.49 +0.6
598,586 - OH686_02850 0.49 +0.4
598,586 - OH686_02850 0.49 +0.5
598,586 - OH686_02850 0.49 +0.2
598,586 - OH686_02850 0.49 +1.0
598,586 - OH686_02850 0.49 +0.5
598,586 - OH686_02850 0.49 +1.2
598,586 - OH686_02850 0.49 +0.7
598,786 + OH686_02850 0.66 +0.2
598,786 + OH686_02850 0.66 +0.2
598,786 + OH686_02850 0.66 +0.5
598,787 - OH686_02850 0.66 -0.1
598,787 - OH686_02850 0.66 +0.8
598,787 - OH686_02850 0.66 +0.8
598,787 - OH686_02850 0.66 +0.7
598,852 + OH686_02850 0.71 +0.2
598,853 - OH686_02850 0.71 +2.0
598,853 - OH686_02850 0.71 +0.1

Or see this region's nucleotide sequence