Strain Fitness in Pseudomonas sp. S08-1 around OH686_02825

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02820 and OH686_02825 overlap by 11 nucleotidesOH686_02825 and OH686_02830 are separated by 3 nucleotides OH686_02820: OH686_02820 - flagellar protein export ATPase FliI, at 591,081 to 592,439 _02820 OH686_02825: OH686_02825 - Flagellar assembly protein FliH, at 592,429 to 593,211 _02825 OH686_02830: OH686_02830 - flagellar motor switch protein FliG, at 593,215 to 594,231 _02830 Position (kb) 592 593 594Strain fitness (log2 ratio) -1 0 1 2at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.685 kb on + strand, within OH686_02820at 591.685 kb on + strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.899 kb on + strand, within OH686_02820at 591.899 kb on + strand, within OH686_02820at 591.900 kb on - strand, within OH686_02820at 591.900 kb on - strand, within OH686_02820at 592.207 kb on + strand, within OH686_02820at 592.207 kb on + strand, within OH686_02820at 592.207 kb on + strand, within OH686_02820at 592.207 kb on + strand, within OH686_02820at 592.207 kb on + strand, within OH686_02820at 592.207 kb on + strand, within OH686_02820at 592.208 kb on - strand, within OH686_02820at 592.208 kb on - strand, within OH686_02820at 592.208 kb on - strand, within OH686_02820at 592.208 kb on - strand, within OH686_02820at 592.208 kb on - strand, within OH686_02820at 592.208 kb on - strand, within OH686_02820at 592.208 kb on - strand, within OH686_02820at 592.261 kb on + strand, within OH686_02820at 592.261 kb on + strand, within OH686_02820at 592.261 kb on + strand, within OH686_02820at 592.261 kb on + strand, within OH686_02820at 592.261 kb on + strand, within OH686_02820at 592.262 kb on - strand, within OH686_02820at 592.262 kb on - strand, within OH686_02820at 592.262 kb on - strand, within OH686_02820at 592.262 kb on - strand, within OH686_02820at 592.262 kb on - strand, within OH686_02820at 592.680 kb on + strand, within OH686_02825at 592.680 kb on + strand, within OH686_02825at 592.680 kb on + strand, within OH686_02825at 592.681 kb on - strand, within OH686_02825at 592.982 kb on + strand, within OH686_02825at 592.982 kb on + strand, within OH686_02825at 592.983 kb on - strand, within OH686_02825at 592.983 kb on - strand, within OH686_02825at 592.983 kb on - strand, within OH686_02825at 593.216 kb on + strandat 593.216 kb on + strandat 593.216 kb on + strandat 593.216 kb on + strandat 593.217 kb on - strandat 593.217 kb on - strandat 593.810 kb on + strand, within OH686_02830at 593.810 kb on + strand, within OH686_02830at 593.811 kb on - strand, within OH686_02830at 593.811 kb on - strand, within OH686_02830at 593.846 kb on + strand, within OH686_02830at 593.985 kb on + strand, within OH686_02830at 593.987 kb on + strand, within OH686_02830at 593.987 kb on + strand, within OH686_02830at 593.987 kb on + strand, within OH686_02830at 593.987 kb on + strand, within OH686_02830at 593.987 kb on + strand, within OH686_02830at 593.987 kb on + strand, within OH686_02830at 593.987 kb on + strand, within OH686_02830at 593.987 kb on + strand, within OH686_02830at 593.987 kb on + strand, within OH686_02830at 593.987 kb on + strand, within OH686_02830at 593.987 kb on + strand, within OH686_02830at 593.987 kb on + strand, within OH686_02830at 593.987 kb on + strand, within OH686_02830at 593.988 kb on - strand, within OH686_02830at 593.988 kb on - strand, within OH686_02830at 593.988 kb on - strand, within OH686_02830at 593.988 kb on - strand, within OH686_02830at 593.988 kb on - strand, within OH686_02830at 593.988 kb on - strand, within OH686_02830at 593.988 kb on - strand, within OH686_02830at 593.988 kb on - strand, within OH686_02830at 593.988 kb on - strand, within OH686_02830at 593.988 kb on - strand, within OH686_02830

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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591,484 + OH686_02820 0.30 +0.5
591,484 + OH686_02820 0.30 +1.0
591,484 + OH686_02820 0.30 +0.2
591,484 + OH686_02820 0.30 +0.5
591,484 + OH686_02820 0.30 -0.0
591,484 + OH686_02820 0.30 +0.9
591,484 + OH686_02820 0.30 +0.7
591,484 + OH686_02820 0.30 +0.0
591,484 + OH686_02820 0.30 +0.2
591,485 - OH686_02820 0.30 -0.1
591,485 - OH686_02820 0.30 +0.3
591,485 - OH686_02820 0.30 +0.3
591,485 - OH686_02820 0.30 +0.1
591,485 - OH686_02820 0.30 -0.0
591,485 - OH686_02820 0.30 +0.5
591,485 - OH686_02820 0.30 +0.2
591,685 + OH686_02820 0.44 +1.0
591,685 + OH686_02820 0.44 +0.5
591,686 - OH686_02820 0.45 +0.2
591,686 - OH686_02820 0.45 +0.3
591,686 - OH686_02820 0.45 +0.7
591,686 - OH686_02820 0.45 +0.5
591,686 - OH686_02820 0.45 +0.2
591,686 - OH686_02820 0.45 +0.4
591,706 + OH686_02820 0.46 +0.3
591,706 + OH686_02820 0.46 +0.2
591,706 + OH686_02820 0.46 -0.7
591,706 + OH686_02820 0.46 +0.3
591,706 + OH686_02820 0.46 +0.4
591,706 + OH686_02820 0.46 +1.0
591,706 + OH686_02820 0.46 +0.3
591,706 + OH686_02820 0.46 +0.9
591,706 + OH686_02820 0.46 -0.1
591,706 + OH686_02820 0.46 +0.7
591,706 + OH686_02820 0.46 +2.0
591,706 + OH686_02820 0.46 +0.2
591,706 + OH686_02820 0.46 +1.2
591,706 + OH686_02820 0.46 +0.4
591,707 - OH686_02820 0.46 -0.3
591,707 - OH686_02820 0.46 +0.8
591,707 - OH686_02820 0.46 -0.1
591,707 - OH686_02820 0.46 +0.6
591,707 - OH686_02820 0.46 +0.7
591,707 - OH686_02820 0.46 +0.0
591,707 - OH686_02820 0.46 -0.4
591,707 - OH686_02820 0.46 +0.0
591,707 - OH686_02820 0.46 +0.1
591,707 - OH686_02820 0.46 +0.3
591,707 - OH686_02820 0.46 +0.7
591,707 - OH686_02820 0.46 +0.5
591,707 - OH686_02820 0.46 +0.1
591,707 - OH686_02820 0.46 +0.5
591,899 + OH686_02820 0.60 +0.4
591,899 + OH686_02820 0.60 +0.2
591,900 - OH686_02820 0.60 +0.6
591,900 - OH686_02820 0.60 +0.5
592,207 + OH686_02820 0.83 -0.7
592,207 + OH686_02820 0.83 +0.3
592,207 + OH686_02820 0.83 -0.4
592,207 + OH686_02820 0.83 +1.1
592,207 + OH686_02820 0.83 +0.2
592,207 + OH686_02820 0.83 -1.3
592,208 - OH686_02820 0.83 +0.6
592,208 - OH686_02820 0.83 +0.3
592,208 - OH686_02820 0.83 +0.4
592,208 - OH686_02820 0.83 -0.0
592,208 - OH686_02820 0.83 +1.0
592,208 - OH686_02820 0.83 +0.8
592,208 - OH686_02820 0.83 +0.0
592,261 + OH686_02820 0.87 +0.4
592,261 + OH686_02820 0.87 +1.1
592,261 + OH686_02820 0.87 +0.9
592,261 + OH686_02820 0.87 -1.5
592,261 + OH686_02820 0.87 +0.2
592,262 - OH686_02820 0.87 +0.2
592,262 - OH686_02820 0.87 +0.6
592,262 - OH686_02820 0.87 +0.8
592,262 - OH686_02820 0.87 +0.0
592,262 - OH686_02820 0.87 +0.3
592,680 + OH686_02825 0.32 +1.1
592,680 + OH686_02825 0.32 -0.5
592,680 + OH686_02825 0.32 +0.8
592,681 - OH686_02825 0.32 +0.1
592,982 + OH686_02825 0.71 +0.4
592,982 + OH686_02825 0.71 +1.2
592,983 - OH686_02825 0.71 +0.6
592,983 - OH686_02825 0.71 +1.3
592,983 - OH686_02825 0.71 +0.7
593,216 + -0.2
593,216 + +0.7
593,216 + +0.4
593,216 + +0.7
593,217 - -0.4
593,217 - -0.8
593,810 + OH686_02830 0.59 +1.4
593,810 + OH686_02830 0.59 +0.8
593,811 - OH686_02830 0.59 +0.0
593,811 - OH686_02830 0.59 +0.8
593,846 + OH686_02830 0.62 +0.3
593,985 + OH686_02830 0.76 +0.9
593,987 + OH686_02830 0.76 +0.0
593,987 + OH686_02830 0.76 -0.2
593,987 + OH686_02830 0.76 +0.5
593,987 + OH686_02830 0.76 -0.5
593,987 + OH686_02830 0.76 +0.5
593,987 + OH686_02830 0.76 +0.2
593,987 + OH686_02830 0.76 +0.6
593,987 + OH686_02830 0.76 +0.2
593,987 + OH686_02830 0.76 +0.4
593,987 + OH686_02830 0.76 +0.0
593,987 + OH686_02830 0.76 -1.3
593,987 + OH686_02830 0.76 +0.1
593,987 + OH686_02830 0.76 -0.1
593,988 - OH686_02830 0.76 +0.3
593,988 - OH686_02830 0.76 +1.4
593,988 - OH686_02830 0.76 -0.6
593,988 - OH686_02830 0.76 +0.4
593,988 - OH686_02830 0.76 +0.6
593,988 - OH686_02830 0.76 +0.3
593,988 - OH686_02830 0.76 +0.3
593,988 - OH686_02830 0.76 -1.6
593,988 - OH686_02830 0.76 +0.4
593,988 - OH686_02830 0.76 +0.4

Or see this region's nucleotide sequence