Strain Fitness in Pseudomonas sp. S08-1 around OH686_02815

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02805 and OH686_02810 are separated by 5 nucleotidesOH686_02810 and OH686_02815 are separated by 70 nucleotidesOH686_02815 and OH686_02820 are separated by 3 nucleotides OH686_02805: OH686_02805 - Serine phosphatase RsbU, regulator of sigma subunit / Serine-protein kinase RsbW , at 588,552 to 590,246 _02805 OH686_02810: OH686_02810 - Anti-sigma B factor antagonist RsbV, at 590,252 to 590,557 _02810 OH686_02815: OH686_02815 - flagellar export protein FliJ, at 590,628 to 591,077 _02815 OH686_02820: OH686_02820 - flagellar protein export ATPase FliI, at 591,081 to 592,439 _02820 Position (kb) 590 591 592Strain fitness (log2 ratio) -1 0 1 2at 589.735 kb on + strand, within OH686_02805at 589.736 kb on - strand, within OH686_02805at 589.923 kb on - strand, within OH686_02805at 589.924 kb on + strand, within OH686_02805at 589.925 kb on - strand, within OH686_02805at 589.925 kb on - strand, within OH686_02805at 589.925 kb on - strand, within OH686_02805at 589.925 kb on - strand, within OH686_02805at 589.925 kb on - strand, within OH686_02805at 589.925 kb on - strand, within OH686_02805at 589.925 kb on - strand, within OH686_02805at 589.925 kb on - strand, within OH686_02805at 590.400 kb on + strand, within OH686_02810at 590.400 kb on + strand, within OH686_02810at 590.400 kb on + strand, within OH686_02810at 590.401 kb on - strand, within OH686_02810at 590.401 kb on - strand, within OH686_02810at 590.401 kb on - strand, within OH686_02810at 590.401 kb on - strand, within OH686_02810at 590.401 kb on - strand, within OH686_02810at 590.401 kb on - strand, within OH686_02810at 590.427 kb on + strand, within OH686_02810at 590.427 kb on + strand, within OH686_02810at 590.427 kb on + strand, within OH686_02810at 590.427 kb on + strand, within OH686_02810at 590.428 kb on - strand, within OH686_02810at 590.457 kb on + strand, within OH686_02810at 590.457 kb on + strand, within OH686_02810at 590.457 kb on + strand, within OH686_02810at 590.457 kb on + strand, within OH686_02810at 590.458 kb on - strand, within OH686_02810at 590.458 kb on - strand, within OH686_02810at 590.540 kb on + strandat 590.540 kb on + strandat 590.541 kb on - strandat 590.559 kb on + strandat 590.560 kb on - strandat 590.560 kb on - strandat 590.560 kb on - strandat 590.560 kb on - strandat 590.560 kb on - strandat 590.560 kb on - strandat 590.579 kb on + strandat 590.579 kb on + strandat 590.580 kb on - strandat 590.580 kb on - strandat 590.596 kb on + strandat 590.596 kb on + strandat 590.596 kb on + strandat 590.596 kb on + strandat 590.596 kb on + strandat 590.596 kb on + strandat 590.596 kb on + strandat 590.596 kb on + strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.597 kb on - strandat 590.719 kb on + strand, within OH686_02815at 590.720 kb on - strand, within OH686_02815at 590.736 kb on - strand, within OH686_02815at 590.736 kb on - strand, within OH686_02815at 590.756 kb on + strand, within OH686_02815at 590.756 kb on + strand, within OH686_02815at 590.756 kb on + strand, within OH686_02815at 590.757 kb on - strand, within OH686_02815at 590.757 kb on - strand, within OH686_02815at 590.757 kb on - strand, within OH686_02815at 590.758 kb on + strand, within OH686_02815at 590.758 kb on + strand, within OH686_02815at 590.758 kb on + strand, within OH686_02815at 590.759 kb on - strand, within OH686_02815at 590.759 kb on - strand, within OH686_02815at 590.759 kb on - strand, within OH686_02815at 590.866 kb on + strand, within OH686_02815at 590.866 kb on + strand, within OH686_02815at 590.866 kb on + strand, within OH686_02815at 590.866 kb on + strand, within OH686_02815at 590.866 kb on + strand, within OH686_02815at 590.866 kb on + strand, within OH686_02815at 590.867 kb on - strand, within OH686_02815at 590.867 kb on - strand, within OH686_02815at 590.867 kb on - strand, within OH686_02815at 590.867 kb on - strand, within OH686_02815at 590.867 kb on - strand, within OH686_02815at 590.867 kb on - strand, within OH686_02815at 590.870 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.990 kb on + strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 590.991 kb on - strand, within OH686_02815at 591.079 kb on + strandat 591.079 kb on + strandat 591.079 kb on + strandat 591.079 kb on + strandat 591.079 kb on + strandat 591.080 kb on - strandat 591.080 kb on - strandat 591.080 kb on - strandat 591.080 kb on - strandat 591.170 kb on - strandat 591.170 kb on - strandat 591.170 kb on - strandat 591.232 kb on + strand, within OH686_02820at 591.232 kb on + strand, within OH686_02820at 591.232 kb on + strand, within OH686_02820at 591.232 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.484 kb on + strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.485 kb on - strand, within OH686_02820at 591.685 kb on + strand, within OH686_02820at 591.685 kb on + strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.686 kb on - strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.706 kb on + strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.707 kb on - strand, within OH686_02820at 591.899 kb on + strand, within OH686_02820at 591.899 kb on + strand, within OH686_02820at 591.900 kb on - strand, within OH686_02820at 591.900 kb on - strand, within OH686_02820

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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589,735 + OH686_02805 0.70 -0.2
589,736 - OH686_02805 0.70 -0.1
589,923 - OH686_02805 0.81 +0.6
589,924 + OH686_02805 0.81 +0.2
589,925 - OH686_02805 0.81 -1.0
589,925 - OH686_02805 0.81 -0.6
589,925 - OH686_02805 0.81 -1.3
589,925 - OH686_02805 0.81 +0.6
589,925 - OH686_02805 0.81 +0.4
589,925 - OH686_02805 0.81 -0.9
589,925 - OH686_02805 0.81 +0.4
589,925 - OH686_02805 0.81 +0.5
590,400 + OH686_02810 0.48 +0.3
590,400 + OH686_02810 0.48 -0.4
590,400 + OH686_02810 0.48 -0.0
590,401 - OH686_02810 0.49 -0.7
590,401 - OH686_02810 0.49 -0.6
590,401 - OH686_02810 0.49 +1.6
590,401 - OH686_02810 0.49 -0.7
590,401 - OH686_02810 0.49 -0.4
590,401 - OH686_02810 0.49 -0.8
590,427 + OH686_02810 0.57 -0.5
590,427 + OH686_02810 0.57 +0.0
590,427 + OH686_02810 0.57 -0.4
590,427 + OH686_02810 0.57 -0.3
590,428 - OH686_02810 0.58 -1.6
590,457 + OH686_02810 0.67 -0.0
590,457 + OH686_02810 0.67 +1.1
590,457 + OH686_02810 0.67 +0.6
590,457 + OH686_02810 0.67 -0.0
590,458 - OH686_02810 0.67 +0.8
590,458 - OH686_02810 0.67 +0.4
590,540 + -0.8
590,540 + +1.3
590,541 - -0.8
590,559 + +0.4
590,560 - -1.2
590,560 - -0.1
590,560 - +0.2
590,560 - -0.7
590,560 - +0.1
590,560 - -1.2
590,579 + -0.1
590,579 + -1.7
590,580 - -0.2
590,580 - -0.6
590,596 + +0.6
590,596 + +0.5
590,596 + +0.4
590,596 + -0.3
590,596 + -0.2
590,596 + -0.2
590,596 + -0.1
590,596 + +1.2
590,597 - +0.8
590,597 - +0.6
590,597 - +1.0
590,597 - +0.4
590,597 - +0.4
590,597 - +0.5
590,597 - -0.3
590,597 - +0.4
590,597 - +0.3
590,719 + OH686_02815 0.20 +0.9
590,720 - OH686_02815 0.20 +0.7
590,736 - OH686_02815 0.24 +0.9
590,736 - OH686_02815 0.24 +0.5
590,756 + OH686_02815 0.28 +1.6
590,756 + OH686_02815 0.28 +1.1
590,756 + OH686_02815 0.28 -0.9
590,757 - OH686_02815 0.29 -0.4
590,757 - OH686_02815 0.29 -1.3
590,757 - OH686_02815 0.29 +1.2
590,758 + OH686_02815 0.29 +0.5
590,758 + OH686_02815 0.29 -0.4
590,758 + OH686_02815 0.29 +0.6
590,759 - OH686_02815 0.29 +0.1
590,759 - OH686_02815 0.29 +0.6
590,759 - OH686_02815 0.29 +0.7
590,866 + OH686_02815 0.53 +0.9
590,866 + OH686_02815 0.53 +0.5
590,866 + OH686_02815 0.53 +1.2
590,866 + OH686_02815 0.53 +0.6
590,866 + OH686_02815 0.53 +0.1
590,866 + OH686_02815 0.53 +0.3
590,867 - OH686_02815 0.53 +0.4
590,867 - OH686_02815 0.53 +1.0
590,867 - OH686_02815 0.53 +0.5
590,867 - OH686_02815 0.53 +0.6
590,867 - OH686_02815 0.53 -0.1
590,867 - OH686_02815 0.53 -0.6
590,870 + OH686_02815 0.54 +0.6
590,990 + OH686_02815 0.80 +0.6
590,990 + OH686_02815 0.80 +0.4
590,990 + OH686_02815 0.80 +0.8
590,990 + OH686_02815 0.80 +1.1
590,990 + OH686_02815 0.80 +0.3
590,990 + OH686_02815 0.80 +0.8
590,990 + OH686_02815 0.80 +0.4
590,990 + OH686_02815 0.80 +1.1
590,990 + OH686_02815 0.80 +1.0
590,990 + OH686_02815 0.80 +0.2
590,990 + OH686_02815 0.80 +0.2
590,990 + OH686_02815 0.80 +0.4
590,991 - OH686_02815 0.81 +0.3
590,991 - OH686_02815 0.81 +0.0
590,991 - OH686_02815 0.81 +0.1
590,991 - OH686_02815 0.81 +0.6
590,991 - OH686_02815 0.81 +1.2
590,991 - OH686_02815 0.81 +0.5
590,991 - OH686_02815 0.81 +0.5
590,991 - OH686_02815 0.81 +0.5
590,991 - OH686_02815 0.81 +0.4
590,991 - OH686_02815 0.81 +0.3
591,079 + +0.6
591,079 + +0.6
591,079 + +0.5
591,079 + +0.7
591,079 + +0.8
591,080 - +0.0
591,080 - +0.3
591,080 - +0.0
591,080 - -0.6
591,170 - +0.3
591,170 - -0.2
591,170 - +0.3
591,232 + OH686_02820 0.11 +0.2
591,232 + OH686_02820 0.11 +0.4
591,232 + OH686_02820 0.11 -0.2
591,232 + OH686_02820 0.11 +1.3
591,484 + OH686_02820 0.30 +0.5
591,484 + OH686_02820 0.30 +1.0
591,484 + OH686_02820 0.30 +0.2
591,484 + OH686_02820 0.30 +0.5
591,484 + OH686_02820 0.30 -0.0
591,484 + OH686_02820 0.30 +0.9
591,484 + OH686_02820 0.30 +0.7
591,484 + OH686_02820 0.30 +0.0
591,484 + OH686_02820 0.30 +0.2
591,485 - OH686_02820 0.30 -0.1
591,485 - OH686_02820 0.30 +0.3
591,485 - OH686_02820 0.30 +0.3
591,485 - OH686_02820 0.30 +0.1
591,485 - OH686_02820 0.30 -0.0
591,485 - OH686_02820 0.30 +0.5
591,485 - OH686_02820 0.30 +0.2
591,685 + OH686_02820 0.44 +1.0
591,685 + OH686_02820 0.44 +0.5
591,686 - OH686_02820 0.45 +0.2
591,686 - OH686_02820 0.45 +0.3
591,686 - OH686_02820 0.45 +0.7
591,686 - OH686_02820 0.45 +0.5
591,686 - OH686_02820 0.45 +0.2
591,686 - OH686_02820 0.45 +0.4
591,706 + OH686_02820 0.46 +0.3
591,706 + OH686_02820 0.46 +0.2
591,706 + OH686_02820 0.46 -0.7
591,706 + OH686_02820 0.46 +0.3
591,706 + OH686_02820 0.46 +0.4
591,706 + OH686_02820 0.46 +1.0
591,706 + OH686_02820 0.46 +0.3
591,706 + OH686_02820 0.46 +0.9
591,706 + OH686_02820 0.46 -0.1
591,706 + OH686_02820 0.46 +0.7
591,706 + OH686_02820 0.46 +2.0
591,706 + OH686_02820 0.46 +0.2
591,706 + OH686_02820 0.46 +1.2
591,706 + OH686_02820 0.46 +0.4
591,707 - OH686_02820 0.46 -0.3
591,707 - OH686_02820 0.46 +0.8
591,707 - OH686_02820 0.46 -0.1
591,707 - OH686_02820 0.46 +0.6
591,707 - OH686_02820 0.46 +0.7
591,707 - OH686_02820 0.46 +0.0
591,707 - OH686_02820 0.46 -0.4
591,707 - OH686_02820 0.46 +0.0
591,707 - OH686_02820 0.46 +0.1
591,707 - OH686_02820 0.46 +0.3
591,707 - OH686_02820 0.46 +0.7
591,707 - OH686_02820 0.46 +0.5
591,707 - OH686_02820 0.46 +0.1
591,707 - OH686_02820 0.46 +0.5
591,899 + OH686_02820 0.60 +0.4
591,899 + OH686_02820 0.60 +0.2
591,900 - OH686_02820 0.60 +0.6
591,900 - OH686_02820 0.60 +0.5

Or see this region's nucleotide sequence