Strain Fitness in Pseudomonas sp. S08-1 around OH686_02325

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02320 and OH686_02325 are separated by 468 nucleotidesOH686_02325 and OH686_02330 are separated by 236 nucleotides OH686_02320: OH686_02320 - hypothetical protein, at 494,133 to 494,606 _02320 OH686_02325: OH686_02325 - hypothetical protein, at 495,075 to 495,389 _02325 OH686_02330: OH686_02330 - Acyl-CoA dehydrogenase, at 495,626 to 496,774 _02330 Position (kb) 495 496Strain fitness (log2 ratio) -2 -1 0 1at 494.130 kb on + strandat 494.134 kb on + strandat 494.135 kb on - strandat 494.135 kb on - strandat 494.159 kb on + strandat 494.197 kb on + strand, within OH686_02320at 494.197 kb on + strand, within OH686_02320at 494.198 kb on - strand, within OH686_02320at 494.203 kb on - strand, within OH686_02320at 494.276 kb on - strand, within OH686_02320at 494.293 kb on + strand, within OH686_02320at 494.389 kb on - strand, within OH686_02320at 494.397 kb on + strand, within OH686_02320at 494.413 kb on + strand, within OH686_02320at 494.478 kb on + strand, within OH686_02320at 494.478 kb on + strand, within OH686_02320at 494.479 kb on - strand, within OH686_02320at 494.581 kb on - strandat 494.606 kb on + strandat 494.606 kb on + strandat 494.607 kb on - strandat 494.627 kb on + strandat 494.628 kb on - strandat 494.628 kb on - strandat 494.761 kb on - strandat 494.830 kb on + strandat 494.830 kb on + strandat 494.997 kb on + strandat 494.997 kb on + strandat 495.009 kb on - strandat 495.021 kb on - strandat 495.021 kb on - strandat 495.076 kb on + strandat 495.099 kb on - strandat 495.150 kb on + strand, within OH686_02325at 495.150 kb on + strand, within OH686_02325at 495.151 kb on - strand, within OH686_02325at 495.151 kb on - strand, within OH686_02325at 495.404 kb on + strandat 495.405 kb on - strandat 495.408 kb on + strandat 495.408 kb on + strandat 495.408 kb on + strandat 495.408 kb on + strandat 495.409 kb on - strandat 495.410 kb on + strandat 495.411 kb on - strandat 495.590 kb on + strandat 495.590 kb on + strandat 495.738 kb on + strandat 495.738 kb on + strandat 495.738 kb on + strandat 495.738 kb on + strandat 495.738 kb on + strandat 495.738 kb on + strandat 495.738 kb on + strandat 495.738 kb on + strandat 495.739 kb on - strandat 495.739 kb on - strandat 495.739 kb on - strandat 495.739 kb on - strandat 495.739 kb on - strandat 495.771 kb on + strand, within OH686_02330at 495.771 kb on + strand, within OH686_02330at 495.771 kb on + strand, within OH686_02330at 495.771 kb on + strand, within OH686_02330at 495.771 kb on + strand, within OH686_02330at 495.771 kb on + strand, within OH686_02330at 495.772 kb on - strand, within OH686_02330at 495.772 kb on - strand, within OH686_02330at 495.772 kb on - strand, within OH686_02330at 495.772 kb on - strand, within OH686_02330at 495.775 kb on + strand, within OH686_02330at 495.775 kb on + strand, within OH686_02330at 495.776 kb on - strand, within OH686_02330at 495.776 kb on - strand, within OH686_02330at 495.776 kb on - strand, within OH686_02330at 495.868 kb on - strand, within OH686_02330at 496.266 kb on + strand, within OH686_02330at 496.266 kb on + strand, within OH686_02330at 496.266 kb on + strand, within OH686_02330at 496.266 kb on + strand, within OH686_02330at 496.266 kb on + strand, within OH686_02330at 496.266 kb on + strand, within OH686_02330at 496.266 kb on + strand, within OH686_02330at 496.266 kb on + strand, within OH686_02330at 496.266 kb on + strand, within OH686_02330at 496.267 kb on - strand, within OH686_02330at 496.267 kb on - strand, within OH686_02330at 496.267 kb on - strand, within OH686_02330at 496.267 kb on - strand, within OH686_02330at 496.267 kb on - strand, within OH686_02330at 496.267 kb on - strand, within OH686_02330at 496.267 kb on - strand, within OH686_02330at 496.267 kb on - strand, within OH686_02330at 496.267 kb on - strand, within OH686_02330at 496.267 kb on - strand, within OH686_02330at 496.269 kb on + strand, within OH686_02330at 496.269 kb on + strand, within OH686_02330at 496.270 kb on - strand, within OH686_02330at 496.270 kb on - strand, within OH686_02330at 496.270 kb on - strand, within OH686_02330at 496.320 kb on + strand, within OH686_02330at 496.320 kb on + strand, within OH686_02330at 496.320 kb on + strand, within OH686_02330at 496.321 kb on - strand, within OH686_02330at 496.321 kb on - strand, within OH686_02330at 496.321 kb on - strand, within OH686_02330

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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494,130 + -0.6
494,134 + -0.7
494,135 - -2.3
494,135 - +0.4
494,159 + +1.2
494,197 + OH686_02320 0.14 +0.6
494,197 + OH686_02320 0.14 +0.7
494,198 - OH686_02320 0.14 +0.0
494,203 - OH686_02320 0.15 -0.4
494,276 - OH686_02320 0.30 +0.2
494,293 + OH686_02320 0.34 +0.3
494,389 - OH686_02320 0.54 -1.8
494,397 + OH686_02320 0.56 +0.1
494,413 + OH686_02320 0.59 -0.3
494,478 + OH686_02320 0.73 -0.3
494,478 + OH686_02320 0.73 +0.0
494,479 - OH686_02320 0.73 -0.7
494,581 - -1.1
494,606 + +0.2
494,606 + -0.1
494,607 - -1.3
494,627 + -0.7
494,628 - -2.5
494,628 - -1.3
494,761 - +0.1
494,830 + +0.3
494,830 + +0.6
494,997 + +0.0
494,997 + -0.3
495,009 - +0.9
495,021 - -0.7
495,021 - +0.1
495,076 + -1.8
495,099 - -0.3
495,150 + OH686_02325 0.24 +1.2
495,150 + OH686_02325 0.24 +0.6
495,151 - OH686_02325 0.24 +0.7
495,151 - OH686_02325 0.24 -0.7
495,404 + +0.2
495,405 - -1.4
495,408 + -0.8
495,408 + -0.2
495,408 + +0.2
495,408 + +0.0
495,409 - +0.3
495,410 + -0.5
495,411 - +0.6
495,590 + -0.6
495,590 + -0.5
495,738 + +1.5
495,738 + +0.3
495,738 + +0.2
495,738 + -0.3
495,738 + +0.5
495,738 + -0.1
495,738 + -0.3
495,738 + +0.0
495,739 - +0.5
495,739 - +0.7
495,739 - +1.3
495,739 - +0.1
495,739 - -1.3
495,771 + OH686_02330 0.13 -0.2
495,771 + OH686_02330 0.13 +0.0
495,771 + OH686_02330 0.13 -0.3
495,771 + OH686_02330 0.13 -0.1
495,771 + OH686_02330 0.13 -0.3
495,771 + OH686_02330 0.13 +0.4
495,772 - OH686_02330 0.13 -2.5
495,772 - OH686_02330 0.13 +0.9
495,772 - OH686_02330 0.13 +0.3
495,772 - OH686_02330 0.13 +0.1
495,775 + OH686_02330 0.13 -0.1
495,775 + OH686_02330 0.13 +0.9
495,776 - OH686_02330 0.13 -0.8
495,776 - OH686_02330 0.13 -0.8
495,776 - OH686_02330 0.13 -0.6
495,868 - OH686_02330 0.21 -0.5
496,266 + OH686_02330 0.56 +0.5
496,266 + OH686_02330 0.56 -0.0
496,266 + OH686_02330 0.56 +0.1
496,266 + OH686_02330 0.56 -1.0
496,266 + OH686_02330 0.56 -0.3
496,266 + OH686_02330 0.56 -0.2
496,266 + OH686_02330 0.56 -0.3
496,266 + OH686_02330 0.56 -1.0
496,266 + OH686_02330 0.56 +0.0
496,267 - OH686_02330 0.56 +0.8
496,267 - OH686_02330 0.56 +0.7
496,267 - OH686_02330 0.56 -0.1
496,267 - OH686_02330 0.56 -0.1
496,267 - OH686_02330 0.56 -0.3
496,267 - OH686_02330 0.56 -0.4
496,267 - OH686_02330 0.56 -1.6
496,267 - OH686_02330 0.56 +0.4
496,267 - OH686_02330 0.56 -1.0
496,267 - OH686_02330 0.56 +0.3
496,269 + OH686_02330 0.56 +1.7
496,269 + OH686_02330 0.56 -0.7
496,270 - OH686_02330 0.56 +0.2
496,270 - OH686_02330 0.56 -0.8
496,270 - OH686_02330 0.56 +0.6
496,320 + OH686_02330 0.60 -0.4
496,320 + OH686_02330 0.60 +1.4
496,320 + OH686_02330 0.60 -0.3
496,321 - OH686_02330 0.60 +0.8
496,321 - OH686_02330 0.60 +0.2
496,321 - OH686_02330 0.60 -0.4

Or see this region's nucleotide sequence