Strain Fitness in Pseudomonas sp. S08-1 around OH686_02215

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02210 and OH686_02215 are separated by 14 nucleotidesOH686_02215 and OH686_02220 are separated by 13 nucleotides OH686_02210: OH686_02210 - cytochrome c oxidase accessory protein CcoG, at 474,291 to 475,706 _02210 OH686_02215: OH686_02215 - Putative analog of CcoH, COG3198, at 475,721 to 476,224 _02215 OH686_02220: OH686_02220 - cadmium-translocating P-type ATPase, at 476,238 to 478,643 _02220 Position (kb) 475 476 477Strain fitness (log2 ratio) -2 -1 0 1at 474.820 kb on + strand, within OH686_02210at 474.820 kb on + strand, within OH686_02210at 474.820 kb on + strand, within OH686_02210at 474.821 kb on - strand, within OH686_02210at 474.821 kb on - strand, within OH686_02210at 474.821 kb on - strand, within OH686_02210at 474.821 kb on - strand, within OH686_02210at 474.825 kb on + strand, within OH686_02210at 474.825 kb on + strand, within OH686_02210at 474.825 kb on + strand, within OH686_02210at 474.826 kb on - strand, within OH686_02210at 474.888 kb on + strand, within OH686_02210at 474.888 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.960 kb on + strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.961 kb on - strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.962 kb on + strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.963 kb on - strand, within OH686_02210at 474.972 kb on + strand, within OH686_02210at 474.972 kb on + strand, within OH686_02210at 475.023 kb on + strand, within OH686_02210at 475.074 kb on + strand, within OH686_02210at 475.074 kb on + strand, within OH686_02210at 475.074 kb on + strand, within OH686_02210at 475.074 kb on + strand, within OH686_02210at 475.075 kb on - strand, within OH686_02210at 475.075 kb on - strand, within OH686_02210at 475.075 kb on - strand, within OH686_02210at 475.248 kb on + strand, within OH686_02210at 475.248 kb on + strand, within OH686_02210at 475.248 kb on + strand, within OH686_02210at 475.248 kb on + strand, within OH686_02210at 475.248 kb on + strand, within OH686_02210at 475.248 kb on + strand, within OH686_02210at 475.249 kb on - strand, within OH686_02210at 475.249 kb on - strand, within OH686_02210at 475.268 kb on - strand, within OH686_02210at 475.306 kb on + strand, within OH686_02210at 475.307 kb on - strand, within OH686_02210at 475.311 kb on + strand, within OH686_02210at 475.311 kb on + strand, within OH686_02210at 475.443 kb on + strand, within OH686_02210at 475.443 kb on + strand, within OH686_02210at 475.443 kb on + strand, within OH686_02210at 475.443 kb on + strand, within OH686_02210at 475.443 kb on + strand, within OH686_02210at 475.443 kb on + strand, within OH686_02210at 475.444 kb on - strand, within OH686_02210at 475.444 kb on - strand, within OH686_02210at 475.444 kb on - strand, within OH686_02210at 475.485 kb on + strand, within OH686_02210at 475.485 kb on + strand, within OH686_02210at 475.485 kb on + strand, within OH686_02210at 475.485 kb on + strand, within OH686_02210at 475.485 kb on + strand, within OH686_02210at 475.485 kb on + strand, within OH686_02210at 475.485 kb on + strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.486 kb on - strand, within OH686_02210at 475.521 kb on + strand, within OH686_02210at 475.521 kb on + strand, within OH686_02210at 475.521 kb on + strand, within OH686_02210at 475.521 kb on + strand, within OH686_02210at 475.521 kb on + strand, within OH686_02210at 475.521 kb on + strand, within OH686_02210at 475.522 kb on - strand, within OH686_02210at 475.522 kb on - strand, within OH686_02210at 475.754 kb on + strandat 475.868 kb on + strand, within OH686_02215at 475.868 kb on + strand, within OH686_02215at 475.868 kb on + strand, within OH686_02215at 475.868 kb on + strand, within OH686_02215at 475.868 kb on + strand, within OH686_02215at 475.869 kb on - strand, within OH686_02215at 475.869 kb on - strand, within OH686_02215at 476.090 kb on + strand, within OH686_02215at 476.090 kb on + strand, within OH686_02215at 476.090 kb on + strand, within OH686_02215at 476.091 kb on - strand, within OH686_02215at 476.091 kb on - strand, within OH686_02215at 476.388 kb on + strandat 476.463 kb on + strandat 477.061 kb on - strand, within OH686_02220

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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474,820 + OH686_02210 0.37 -0.4
474,820 + OH686_02210 0.37 -0.3
474,820 + OH686_02210 0.37 +0.7
474,821 - OH686_02210 0.37 +0.3
474,821 - OH686_02210 0.37 +1.3
474,821 - OH686_02210 0.37 -1.2
474,821 - OH686_02210 0.37 -0.8
474,825 + OH686_02210 0.38 -1.6
474,825 + OH686_02210 0.38 +0.0
474,825 + OH686_02210 0.38 -0.6
474,826 - OH686_02210 0.38 +1.5
474,888 + OH686_02210 0.42 -0.5
474,888 + OH686_02210 0.42 +0.5
474,960 + OH686_02210 0.47 -0.5
474,960 + OH686_02210 0.47 -0.2
474,960 + OH686_02210 0.47 -0.1
474,960 + OH686_02210 0.47 -0.2
474,960 + OH686_02210 0.47 +0.4
474,960 + OH686_02210 0.47 -1.0
474,960 + OH686_02210 0.47 -0.7
474,960 + OH686_02210 0.47 -0.5
474,960 + OH686_02210 0.47 -2.0
474,960 + OH686_02210 0.47 +0.4
474,960 + OH686_02210 0.47 -0.3
474,960 + OH686_02210 0.47 -0.5
474,960 + OH686_02210 0.47 +0.2
474,960 + OH686_02210 0.47 -1.2
474,960 + OH686_02210 0.47 +0.3
474,960 + OH686_02210 0.47 -0.2
474,960 + OH686_02210 0.47 -0.3
474,960 + OH686_02210 0.47 -0.3
474,960 + OH686_02210 0.47 -1.4
474,960 + OH686_02210 0.47 +0.9
474,960 + OH686_02210 0.47 -0.6
474,960 + OH686_02210 0.47 -0.0
474,960 + OH686_02210 0.47 -0.6
474,960 + OH686_02210 0.47 +0.4
474,960 + OH686_02210 0.47 +0.3
474,960 + OH686_02210 0.47 +0.8
474,961 - OH686_02210 0.47 +0.2
474,961 - OH686_02210 0.47 -0.3
474,961 - OH686_02210 0.47 -0.8
474,961 - OH686_02210 0.47 -1.1
474,961 - OH686_02210 0.47 -0.8
474,961 - OH686_02210 0.47 -0.8
474,961 - OH686_02210 0.47 -1.1
474,961 - OH686_02210 0.47 -0.9
474,961 - OH686_02210 0.47 -1.0
474,961 - OH686_02210 0.47 +0.5
474,961 - OH686_02210 0.47 -1.8
474,961 - OH686_02210 0.47 -0.8
474,961 - OH686_02210 0.47 +0.7
474,961 - OH686_02210 0.47 +0.3
474,962 + OH686_02210 0.47 -0.8
474,962 + OH686_02210 0.47 -0.0
474,962 + OH686_02210 0.47 -0.3
474,962 + OH686_02210 0.47 -1.1
474,962 + OH686_02210 0.47 +0.1
474,962 + OH686_02210 0.47 -0.5
474,962 + OH686_02210 0.47 -0.5
474,962 + OH686_02210 0.47 +0.0
474,962 + OH686_02210 0.47 -1.1
474,962 + OH686_02210 0.47 -2.2
474,962 + OH686_02210 0.47 -0.5
474,962 + OH686_02210 0.47 -1.3
474,962 + OH686_02210 0.47 -0.1
474,962 + OH686_02210 0.47 -0.4
474,962 + OH686_02210 0.47 -0.1
474,962 + OH686_02210 0.47 -0.3
474,962 + OH686_02210 0.47 -1.1
474,962 + OH686_02210 0.47 +0.1
474,963 - OH686_02210 0.47 +0.7
474,963 - OH686_02210 0.47 +0.3
474,963 - OH686_02210 0.47 -1.1
474,963 - OH686_02210 0.47 -1.3
474,963 - OH686_02210 0.47 +0.2
474,963 - OH686_02210 0.47 +0.4
474,963 - OH686_02210 0.47 -0.7
474,963 - OH686_02210 0.47 -0.6
474,963 - OH686_02210 0.47 +0.0
474,963 - OH686_02210 0.47 +0.2
474,972 + OH686_02210 0.48 +0.7
474,972 + OH686_02210 0.48 +0.1
475,023 + OH686_02210 0.52 +0.6
475,074 + OH686_02210 0.55 +0.9
475,074 + OH686_02210 0.55 -0.4
475,074 + OH686_02210 0.55 -0.5
475,074 + OH686_02210 0.55 +0.6
475,075 - OH686_02210 0.55 -0.1
475,075 - OH686_02210 0.55 +0.4
475,075 - OH686_02210 0.55 -1.0
475,248 + OH686_02210 0.68 -0.5
475,248 + OH686_02210 0.68 -0.1
475,248 + OH686_02210 0.68 +0.7
475,248 + OH686_02210 0.68 -0.2
475,248 + OH686_02210 0.68 -1.2
475,248 + OH686_02210 0.68 +0.1
475,249 - OH686_02210 0.68 -0.0
475,249 - OH686_02210 0.68 +0.4
475,268 - OH686_02210 0.69 -1.8
475,306 + OH686_02210 0.72 -0.8
475,307 - OH686_02210 0.72 -0.2
475,311 + OH686_02210 0.72 +0.4
475,311 + OH686_02210 0.72 -0.2
475,443 + OH686_02210 0.81 -1.6
475,443 + OH686_02210 0.81 -0.1
475,443 + OH686_02210 0.81 -2.3
475,443 + OH686_02210 0.81 +0.4
475,443 + OH686_02210 0.81 -0.3
475,443 + OH686_02210 0.81 -0.0
475,444 - OH686_02210 0.81 -0.1
475,444 - OH686_02210 0.81 -0.7
475,444 - OH686_02210 0.81 -2.1
475,485 + OH686_02210 0.84 -0.4
475,485 + OH686_02210 0.84 +0.4
475,485 + OH686_02210 0.84 -0.3
475,485 + OH686_02210 0.84 -1.7
475,485 + OH686_02210 0.84 -0.3
475,485 + OH686_02210 0.84 -0.5
475,485 + OH686_02210 0.84 -2.2
475,486 - OH686_02210 0.84 +0.2
475,486 - OH686_02210 0.84 -0.4
475,486 - OH686_02210 0.84 -2.1
475,486 - OH686_02210 0.84 -0.3
475,486 - OH686_02210 0.84 +0.2
475,486 - OH686_02210 0.84 +0.9
475,486 - OH686_02210 0.84 -0.4
475,486 - OH686_02210 0.84 +0.7
475,521 + OH686_02210 0.87 -0.5
475,521 + OH686_02210 0.87 +0.9
475,521 + OH686_02210 0.87 +0.4
475,521 + OH686_02210 0.87 -1.6
475,521 + OH686_02210 0.87 +0.0
475,521 + OH686_02210 0.87 -0.8
475,522 - OH686_02210 0.87 +0.2
475,522 - OH686_02210 0.87 +0.9
475,754 + +0.7
475,868 + OH686_02215 0.29 +0.5
475,868 + OH686_02215 0.29 +0.7
475,868 + OH686_02215 0.29 -1.4
475,868 + OH686_02215 0.29 +0.6
475,868 + OH686_02215 0.29 +0.7
475,869 - OH686_02215 0.29 -0.6
475,869 - OH686_02215 0.29 -0.6
476,090 + OH686_02215 0.73 -0.3
476,090 + OH686_02215 0.73 -0.4
476,090 + OH686_02215 0.73 -0.3
476,091 - OH686_02215 0.73 -1.3
476,091 - OH686_02215 0.73 -0.3
476,388 + -0.6
476,463 + -0.3
477,061 - OH686_02220 0.34 -0.6

Or see this region's nucleotide sequence