Strain Fitness in Pseudomonas sp. S08-1 around OH686_02110

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02105 and OH686_02110 are separated by 79 nucleotidesOH686_02110 and OH686_02115 are separated by 9 nucleotidesOH686_02115 and OH686_02120 are separated by 23 nucleotides OH686_02105: OH686_02105 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 448,648 to 450,090 _02105 OH686_02110: OH686_02110 - Alginate lyase AlgL , at 450,170 to 451,279 _02110 OH686_02115: OH686_02115 - Alginate O-acetyltransferase AlgF, periplasmic, at 451,289 to 451,930 _02115 OH686_02120: OH686_02120 - Alginate O-acetyltransferase AlgJ, inner membrane, at 451,954 to 453,108 _02120 Position (kb) 450 451 452Strain fitness (log2 ratio) -2 -1 0 1 2 3at 449.333 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.435 kb on + strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.436 kb on - strand, within OH686_02105at 449.510 kb on + strand, within OH686_02105at 449.511 kb on - strand, within OH686_02105at 449.511 kb on - strand, within OH686_02105at 449.513 kb on + strand, within OH686_02105at 449.633 kb on + strand, within OH686_02105at 449.633 kb on + strand, within OH686_02105at 449.634 kb on - strand, within OH686_02105at 450.026 kb on + strandat 450.026 kb on + strandat 450.026 kb on + strandat 450.026 kb on + strandat 450.026 kb on + strandat 450.026 kb on + strandat 450.027 kb on - strandat 450.027 kb on - strandat 450.027 kb on - strandat 450.027 kb on - strandat 450.106 kb on + strandat 450.106 kb on + strandat 450.106 kb on + strandat 450.106 kb on + strandat 450.106 kb on + strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.107 kb on - strandat 450.108 kb on + strandat 450.108 kb on + strandat 450.109 kb on - strandat 450.166 kb on - strandat 450.192 kb on - strandat 450.192 kb on - strandat 450.236 kb on + strandat 451.017 kb on + strand, within OH686_02110at 451.017 kb on + strand, within OH686_02110at 451.017 kb on + strand, within OH686_02110at 451.017 kb on + strand, within OH686_02110at 451.071 kb on + strand, within OH686_02110at 451.101 kb on + strand, within OH686_02110at 451.101 kb on + strand, within OH686_02110at 451.101 kb on + strand, within OH686_02110at 451.101 kb on + strand, within OH686_02110at 451.101 kb on + strand, within OH686_02110at 451.164 kb on + strand, within OH686_02110at 451.164 kb on + strand, within OH686_02110at 451.353 kb on + strandat 451.353 kb on + strandat 451.353 kb on + strandat 451.353 kb on + strandat 451.353 kb on + strandat 451.353 kb on + strandat 451.353 kb on + strandat 451.354 kb on - strand, within OH686_02115at 451.354 kb on - strand, within OH686_02115at 451.354 kb on - strand, within OH686_02115at 451.354 kb on - strand, within OH686_02115at 451.354 kb on - strand, within OH686_02115at 451.354 kb on - strand, within OH686_02115at 451.354 kb on - strand, within OH686_02115at 451.354 kb on - strand, within OH686_02115at 451.382 kb on + strand, within OH686_02115at 451.635 kb on + strand, within OH686_02115at 451.635 kb on + strand, within OH686_02115at 451.635 kb on + strand, within OH686_02115at 451.635 kb on + strand, within OH686_02115at 451.635 kb on + strand, within OH686_02115at 451.635 kb on + strand, within OH686_02115at 451.635 kb on + strand, within OH686_02115at 451.635 kb on + strand, within OH686_02115at 451.635 kb on + strand, within OH686_02115at 451.635 kb on + strand, within OH686_02115at 451.635 kb on + strand, within OH686_02115at 451.635 kb on + strand, within OH686_02115at 451.636 kb on - strand, within OH686_02115at 451.636 kb on - strand, within OH686_02115at 451.636 kb on - strand, within OH686_02115at 451.636 kb on - strand, within OH686_02115at 451.636 kb on - strand, within OH686_02115at 451.636 kb on - strand, within OH686_02115at 451.636 kb on - strand, within OH686_02115at 451.636 kb on - strand, within OH686_02115at 451.636 kb on - strand, within OH686_02115at 451.636 kb on - strand, within OH686_02115at 451.636 kb on - strand, within OH686_02115at 451.638 kb on + strand, within OH686_02115at 451.638 kb on + strand, within OH686_02115at 451.638 kb on + strand, within OH686_02115at 451.638 kb on + strand, within OH686_02115at 451.639 kb on - strand, within OH686_02115at 451.639 kb on - strand, within OH686_02115at 451.639 kb on - strand, within OH686_02115at 451.639 kb on - strand, within OH686_02115at 451.639 kb on - strand, within OH686_02115at 451.692 kb on + strand, within OH686_02115at 451.692 kb on + strand, within OH686_02115at 451.692 kb on + strand, within OH686_02115at 451.692 kb on + strand, within OH686_02115at 451.693 kb on - strand, within OH686_02115at 451.693 kb on - strand, within OH686_02115at 451.693 kb on - strand, within OH686_02115at 451.693 kb on - strand, within OH686_02115at 451.693 kb on - strand, within OH686_02115at 451.693 kb on - strand, within OH686_02115at 451.797 kb on + strand, within OH686_02115at 451.797 kb on + strand, within OH686_02115at 451.798 kb on - strand, within OH686_02115at 451.798 kb on - strand, within OH686_02115at 451.798 kb on - strand, within OH686_02115at 451.798 kb on - strand, within OH686_02115at 451.798 kb on - strand, within OH686_02115at 451.798 kb on - strand, within OH686_02115at 451.924 kb on + strandat 451.924 kb on + strandat 451.924 kb on + strandat 451.924 kb on + strandat 451.924 kb on + strandat 451.925 kb on - strandat 451.925 kb on - strandat 451.925 kb on - strandat 451.925 kb on - strandat 451.925 kb on - strandat 451.925 kb on - strandat 451.925 kb on - strandat 451.925 kb on - strandat 451.925 kb on - strandat 451.925 kb on - strandat 451.951 kb on + strandat 451.951 kb on + strandat 451.951 kb on + strandat 451.951 kb on + strandat 451.951 kb on + strandat 451.952 kb on - strandat 451.952 kb on - strandat 452.078 kb on + strand, within OH686_02120at 452.078 kb on + strand, within OH686_02120at 452.079 kb on - strand, within OH686_02120at 452.079 kb on - strand, within OH686_02120at 452.079 kb on - strand, within OH686_02120at 452.079 kb on - strand, within OH686_02120at 452.186 kb on + strand, within OH686_02120at 452.186 kb on + strand, within OH686_02120at 452.186 kb on + strand, within OH686_02120at 452.187 kb on - strand, within OH686_02120at 452.187 kb on - strand, within OH686_02120at 452.187 kb on - strand, within OH686_02120at 452.187 kb on - strand, within OH686_02120at 452.187 kb on - strand, within OH686_02120at 452.187 kb on - strand, within OH686_02120at 452.187 kb on - strand, within OH686_02120at 452.187 kb on - strand, within OH686_02120at 452.187 kb on - strand, within OH686_02120at 452.187 kb on - strand, within OH686_02120at 452.187 kb on - strand, within OH686_02120at 452.187 kb on - strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.192 kb on + strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.193 kb on - strand, within OH686_02120at 452.255 kb on + strand, within OH686_02120at 452.255 kb on + strand, within OH686_02120at 452.255 kb on + strand, within OH686_02120at 452.255 kb on + strand, within OH686_02120at 452.256 kb on - strand, within OH686_02120at 452.256 kb on - strand, within OH686_02120at 452.256 kb on - strand, within OH686_02120

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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449,333 + OH686_02105 0.47 -0.9
449,435 + OH686_02105 0.55 -1.5
449,435 + OH686_02105 0.55 +0.5
449,435 + OH686_02105 0.55 -0.7
449,435 + OH686_02105 0.55 +0.4
449,435 + OH686_02105 0.55 -0.5
449,435 + OH686_02105 0.55 -0.2
449,435 + OH686_02105 0.55 -0.6
449,435 + OH686_02105 0.55 -0.5
449,435 + OH686_02105 0.55 +0.0
449,435 + OH686_02105 0.55 -0.4
449,435 + OH686_02105 0.55 +0.2
449,435 + OH686_02105 0.55 -0.6
449,436 - OH686_02105 0.55 -0.8
449,436 - OH686_02105 0.55 -0.2
449,436 - OH686_02105 0.55 -1.6
449,436 - OH686_02105 0.55 +1.2
449,436 - OH686_02105 0.55 +0.1
449,436 - OH686_02105 0.55 +0.7
449,436 - OH686_02105 0.55 -0.8
449,436 - OH686_02105 0.55 -0.5
449,510 + OH686_02105 0.60 -0.5
449,511 - OH686_02105 0.60 +0.1
449,511 - OH686_02105 0.60 +1.0
449,513 + OH686_02105 0.60 -0.3
449,633 + OH686_02105 0.68 +0.1
449,633 + OH686_02105 0.68 +0.2
449,634 - OH686_02105 0.68 -0.2
450,026 + +0.3
450,026 + +2.0
450,026 + +0.2
450,026 + +0.8
450,026 + +0.0
450,026 + -2.1
450,027 - -0.3
450,027 - +0.4
450,027 - +0.5
450,027 - +0.5
450,106 + -1.4
450,106 + +0.1
450,106 + +0.0
450,106 + -0.2
450,106 + -0.8
450,107 - -0.0
450,107 - +0.4
450,107 - +0.8
450,107 - +0.8
450,107 - -0.9
450,107 - -0.3
450,107 - -0.5
450,107 - +0.8
450,107 - +0.4
450,107 - -0.4
450,107 - +0.9
450,107 - -0.2
450,108 + +0.6
450,108 + +0.1
450,109 - +0.7
450,166 - -0.2
450,192 - +0.3
450,192 - +0.9
450,236 + +0.2
451,017 + OH686_02110 0.76 +0.0
451,017 + OH686_02110 0.76 +0.0
451,017 + OH686_02110 0.76 -0.7
451,017 + OH686_02110 0.76 +1.3
451,071 + OH686_02110 0.81 -0.2
451,101 + OH686_02110 0.84 -1.2
451,101 + OH686_02110 0.84 -0.7
451,101 + OH686_02110 0.84 +1.3
451,101 + OH686_02110 0.84 -0.8
451,101 + OH686_02110 0.84 -0.6
451,164 + OH686_02110 0.90 -1.1
451,164 + OH686_02110 0.90 -0.4
451,353 + +0.5
451,353 + -1.1
451,353 + -1.5
451,353 + +0.7
451,353 + -0.7
451,353 + +0.2
451,353 + -0.3
451,354 - OH686_02115 0.10 -0.8
451,354 - OH686_02115 0.10 +0.2
451,354 - OH686_02115 0.10 -0.1
451,354 - OH686_02115 0.10 -0.7
451,354 - OH686_02115 0.10 +0.7
451,354 - OH686_02115 0.10 +0.4
451,354 - OH686_02115 0.10 -0.3
451,354 - OH686_02115 0.10 -0.3
451,382 + OH686_02115 0.14 -0.1
451,635 + OH686_02115 0.54 -0.1
451,635 + OH686_02115 0.54 -0.4
451,635 + OH686_02115 0.54 -0.1
451,635 + OH686_02115 0.54 -0.9
451,635 + OH686_02115 0.54 -0.1
451,635 + OH686_02115 0.54 +1.5
451,635 + OH686_02115 0.54 -0.4
451,635 + OH686_02115 0.54 -0.1
451,635 + OH686_02115 0.54 -1.1
451,635 + OH686_02115 0.54 -0.3
451,635 + OH686_02115 0.54 -0.2
451,635 + OH686_02115 0.54 -0.2
451,636 - OH686_02115 0.54 +0.2
451,636 - OH686_02115 0.54 -0.8
451,636 - OH686_02115 0.54 +0.1
451,636 - OH686_02115 0.54 +0.4
451,636 - OH686_02115 0.54 -0.1
451,636 - OH686_02115 0.54 +0.3
451,636 - OH686_02115 0.54 +0.7
451,636 - OH686_02115 0.54 +0.7
451,636 - OH686_02115 0.54 +0.3
451,636 - OH686_02115 0.54 +0.7
451,636 - OH686_02115 0.54 +0.4
451,638 + OH686_02115 0.54 -0.3
451,638 + OH686_02115 0.54 -0.4
451,638 + OH686_02115 0.54 +0.8
451,638 + OH686_02115 0.54 -0.3
451,639 - OH686_02115 0.55 -0.2
451,639 - OH686_02115 0.55 +0.1
451,639 - OH686_02115 0.55 +0.2
451,639 - OH686_02115 0.55 +0.0
451,639 - OH686_02115 0.55 -0.3
451,692 + OH686_02115 0.63 -0.3
451,692 + OH686_02115 0.63 +0.0
451,692 + OH686_02115 0.63 +0.7
451,692 + OH686_02115 0.63 +0.4
451,693 - OH686_02115 0.63 +2.0
451,693 - OH686_02115 0.63 +0.9
451,693 - OH686_02115 0.63 +0.2
451,693 - OH686_02115 0.63 -0.1
451,693 - OH686_02115 0.63 -0.0
451,693 - OH686_02115 0.63 -0.6
451,797 + OH686_02115 0.79 +0.3
451,797 + OH686_02115 0.79 +0.5
451,798 - OH686_02115 0.79 +0.0
451,798 - OH686_02115 0.79 +0.2
451,798 - OH686_02115 0.79 -0.3
451,798 - OH686_02115 0.79 +0.1
451,798 - OH686_02115 0.79 +0.3
451,798 - OH686_02115 0.79 -0.7
451,924 + -0.5
451,924 + +0.7
451,924 + -0.9
451,924 + -0.9
451,924 + +0.4
451,925 - +0.2
451,925 - +0.5
451,925 - -0.5
451,925 - -0.4
451,925 - +0.7
451,925 - -0.4
451,925 - -1.4
451,925 - -0.3
451,925 - -0.1
451,925 - -0.3
451,951 + -0.6
451,951 + +0.1
451,951 + +0.0
451,951 + +0.7
451,951 + -0.2
451,952 - +0.9
451,952 - +0.4
452,078 + OH686_02120 0.11 +0.4
452,078 + OH686_02120 0.11 -0.6
452,079 - OH686_02120 0.11 -0.6
452,079 - OH686_02120 0.11 +0.0
452,079 - OH686_02120 0.11 -0.3
452,079 - OH686_02120 0.11 +1.0
452,186 + OH686_02120 0.20 -0.4
452,186 + OH686_02120 0.20 +1.6
452,186 + OH686_02120 0.20 -0.9
452,187 - OH686_02120 0.20 +0.4
452,187 - OH686_02120 0.20 +0.8
452,187 - OH686_02120 0.20 +0.2
452,187 - OH686_02120 0.20 +0.4
452,187 - OH686_02120 0.20 +0.3
452,187 - OH686_02120 0.20 +1.3
452,187 - OH686_02120 0.20 +0.9
452,187 - OH686_02120 0.20 +0.7
452,187 - OH686_02120 0.20 +0.4
452,187 - OH686_02120 0.20 -0.4
452,187 - OH686_02120 0.20 +0.1
452,187 - OH686_02120 0.20 -0.1
452,192 + OH686_02120 0.21 +0.9
452,192 + OH686_02120 0.21 +0.1
452,192 + OH686_02120 0.21 +0.9
452,192 + OH686_02120 0.21 +0.6
452,192 + OH686_02120 0.21 +0.5
452,192 + OH686_02120 0.21 -0.1
452,192 + OH686_02120 0.21 -0.7
452,192 + OH686_02120 0.21 -0.8
452,192 + OH686_02120 0.21 -1.7
452,192 + OH686_02120 0.21 +0.9
452,192 + OH686_02120 0.21 -1.5
452,192 + OH686_02120 0.21 +0.0
452,192 + OH686_02120 0.21 -0.1
452,192 + OH686_02120 0.21 +0.0
452,192 + OH686_02120 0.21 +0.6
452,192 + OH686_02120 0.21 -0.4
452,192 + OH686_02120 0.21 +0.6
452,192 + OH686_02120 0.21 -0.8
452,192 + OH686_02120 0.21 -0.8
452,192 + OH686_02120 0.21 -0.5
452,193 - OH686_02120 0.21 +0.2
452,193 - OH686_02120 0.21 -0.4
452,193 - OH686_02120 0.21 -0.4
452,193 - OH686_02120 0.21 +1.1
452,193 - OH686_02120 0.21 -0.0
452,193 - OH686_02120 0.21 +0.1
452,193 - OH686_02120 0.21 -1.4
452,193 - OH686_02120 0.21 +0.2
452,193 - OH686_02120 0.21 +0.4
452,193 - OH686_02120 0.21 -0.1
452,193 - OH686_02120 0.21 +2.9
452,193 - OH686_02120 0.21 +2.2
452,193 - OH686_02120 0.21 +0.5
452,193 - OH686_02120 0.21 +1.0
452,193 - OH686_02120 0.21 -0.1
452,193 - OH686_02120 0.21 +0.7
452,255 + OH686_02120 0.26 -0.1
452,255 + OH686_02120 0.26 +0.6
452,255 + OH686_02120 0.26 +0.9
452,255 + OH686_02120 0.26 -0.5
452,256 - OH686_02120 0.26 -0.3
452,256 - OH686_02120 0.26 +1.3
452,256 - OH686_02120 0.26 +0.7

Or see this region's nucleotide sequence