Strain Fitness in Pseudomonas sp. S08-1 around OH686_01710

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01705 and OH686_01710 are separated by 4 nucleotidesOH686_01710 and OH686_01715 are separated by 93 nucleotides OH686_01705: OH686_01705 - hypothetical protein, at 368,557 to 370,083 _01705 OH686_01710: OH686_01710 - Alpha-L-glutamate ligase family protein, at 370,088 to 371,074 _01710 OH686_01715: OH686_01715 - aminodeoxychorismate synthase, component I, at 371,168 to 372,511 _01715 Position (kb) 370 371 372Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 369.265 kb on + strand, within OH686_01705at 369.265 kb on + strand, within OH686_01705at 369.265 kb on + strand, within OH686_01705at 369.266 kb on - strand, within OH686_01705at 369.457 kb on + strand, within OH686_01705at 369.458 kb on - strand, within OH686_01705at 369.466 kb on + strand, within OH686_01705at 369.467 kb on - strand, within OH686_01705at 369.496 kb on + strand, within OH686_01705at 369.496 kb on + strand, within OH686_01705at 369.496 kb on + strand, within OH686_01705at 369.496 kb on + strand, within OH686_01705at 369.496 kb on + strand, within OH686_01705at 369.497 kb on - strand, within OH686_01705at 369.497 kb on - strand, within OH686_01705at 369.497 kb on - strand, within OH686_01705at 369.682 kb on + strand, within OH686_01705at 369.682 kb on + strand, within OH686_01705at 369.683 kb on - strand, within OH686_01705at 369.710 kb on + strand, within OH686_01705at 369.710 kb on + strand, within OH686_01705at 369.961 kb on + strandat 369.961 kb on + strandat 369.961 kb on + strandat 369.961 kb on + strandat 369.961 kb on + strandat 369.961 kb on + strandat 369.961 kb on + strandat 369.961 kb on + strandat 369.961 kb on + strandat 369.961 kb on + strandat 369.961 kb on + strandat 369.961 kb on + strandat 369.961 kb on + strandat 369.961 kb on + strandat 369.962 kb on - strandat 369.962 kb on - strandat 369.962 kb on - strandat 369.962 kb on - strandat 370.163 kb on + strandat 370.164 kb on - strandat 370.164 kb on - strandat 370.164 kb on - strandat 370.164 kb on - strandat 370.164 kb on - strandat 370.175 kb on + strandat 370.175 kb on + strandat 370.175 kb on + strandat 370.176 kb on - strandat 370.203 kb on + strand, within OH686_01710at 370.203 kb on + strand, within OH686_01710at 370.203 kb on + strand, within OH686_01710at 370.203 kb on + strand, within OH686_01710at 370.204 kb on - strand, within OH686_01710at 370.204 kb on - strand, within OH686_01710at 370.266 kb on - strand, within OH686_01710at 370.403 kb on + strand, within OH686_01710at 370.403 kb on + strand, within OH686_01710at 370.403 kb on + strand, within OH686_01710at 370.403 kb on + strand, within OH686_01710at 370.403 kb on + strand, within OH686_01710at 370.403 kb on + strand, within OH686_01710at 370.404 kb on - strand, within OH686_01710at 370.404 kb on - strand, within OH686_01710at 370.404 kb on - strand, within OH686_01710at 370.404 kb on - strand, within OH686_01710at 370.404 kb on - strand, within OH686_01710at 370.478 kb on + strand, within OH686_01710at 370.478 kb on + strand, within OH686_01710at 370.478 kb on + strand, within OH686_01710at 370.479 kb on - strand, within OH686_01710at 370.479 kb on - strand, within OH686_01710at 370.479 kb on - strand, within OH686_01710at 370.479 kb on - strand, within OH686_01710at 370.556 kb on + strand, within OH686_01710at 370.556 kb on + strand, within OH686_01710at 370.556 kb on + strand, within OH686_01710at 370.556 kb on + strand, within OH686_01710at 370.556 kb on + strand, within OH686_01710at 370.557 kb on - strand, within OH686_01710at 370.557 kb on - strand, within OH686_01710at 370.557 kb on - strand, within OH686_01710at 370.557 kb on - strand, within OH686_01710at 370.820 kb on + strand, within OH686_01710at 370.820 kb on + strand, within OH686_01710at 370.820 kb on + strand, within OH686_01710at 370.821 kb on - strand, within OH686_01710at 370.821 kb on - strand, within OH686_01710at 370.841 kb on + strand, within OH686_01710at 371.134 kb on + strandat 371.134 kb on + strandat 371.134 kb on + strandat 371.134 kb on + strandat 371.134 kb on + strandat 371.134 kb on + strandat 371.134 kb on + strandat 371.134 kb on + strandat 371.134 kb on + strandat 371.134 kb on + strandat 371.134 kb on + strandat 371.135 kb on - strandat 371.135 kb on - strandat 371.135 kb on - strandat 371.135 kb on - strandat 371.135 kb on - strandat 371.135 kb on - strandat 371.135 kb on - strandat 371.135 kb on - strandat 371.135 kb on - strandat 371.135 kb on - strandat 371.135 kb on - strandat 371.136 kb on - strandat 371.219 kb on + strandat 371.220 kb on - strandat 371.220 kb on - strandat 371.462 kb on + strand, within OH686_01715at 371.463 kb on - strand, within OH686_01715at 371.463 kb on - strand, within OH686_01715at 371.490 kb on + strand, within OH686_01715at 371.491 kb on - strand, within OH686_01715at 371.491 kb on - strand, within OH686_01715at 371.543 kb on + strand, within OH686_01715at 371.543 kb on + strand, within OH686_01715at 371.543 kb on + strand, within OH686_01715at 371.544 kb on - strand, within OH686_01715at 371.544 kb on - strand, within OH686_01715at 371.544 kb on - strand, within OH686_01715at 371.544 kb on - strand, within OH686_01715at 371.544 kb on - strand, within OH686_01715at 371.750 kb on + strand, within OH686_01715at 371.750 kb on + strand, within OH686_01715at 371.750 kb on + strand, within OH686_01715at 371.750 kb on + strand, within OH686_01715at 371.750 kb on + strand, within OH686_01715at 371.750 kb on + strand, within OH686_01715at 371.750 kb on + strand, within OH686_01715at 371.750 kb on + strand, within OH686_01715at 371.750 kb on + strand, within OH686_01715at 371.750 kb on + strand, within OH686_01715at 371.750 kb on + strand, within OH686_01715at 371.750 kb on + strand, within OH686_01715at 371.750 kb on + strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.751 kb on - strand, within OH686_01715at 371.752 kb on + strand, within OH686_01715at 371.752 kb on + strand, within OH686_01715at 371.772 kb on - strand, within OH686_01715at 371.772 kb on - strand, within OH686_01715at 371.772 kb on - strand, within OH686_01715

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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369,265 + OH686_01705 0.46 +0.6
369,265 + OH686_01705 0.46 +0.3
369,265 + OH686_01705 0.46 -0.8
369,266 - OH686_01705 0.46 -0.8
369,457 + OH686_01705 0.59 -0.8
369,458 - OH686_01705 0.59 -1.3
369,466 + OH686_01705 0.60 -1.0
369,467 - OH686_01705 0.60 -1.5
369,496 + OH686_01705 0.61 -0.6
369,496 + OH686_01705 0.61 -0.6
369,496 + OH686_01705 0.61 -0.5
369,496 + OH686_01705 0.61 -1.8
369,496 + OH686_01705 0.61 -0.6
369,497 - OH686_01705 0.62 -0.5
369,497 - OH686_01705 0.62 -0.5
369,497 - OH686_01705 0.62 -0.8
369,682 + OH686_01705 0.74 -0.7
369,682 + OH686_01705 0.74 -1.0
369,683 - OH686_01705 0.74 -0.8
369,710 + OH686_01705 0.76 -0.3
369,710 + OH686_01705 0.76 -0.3
369,961 + -0.8
369,961 + +0.0
369,961 + -0.5
369,961 + -0.8
369,961 + +0.3
369,961 + -1.0
369,961 + -0.8
369,961 + -0.5
369,961 + -1.8
369,961 + +0.5
369,961 + -0.2
369,961 + +0.0
369,961 + -0.4
369,961 + +0.8
369,962 - -0.8
369,962 - +0.2
369,962 - +0.7
369,962 - -1.8
370,163 + -0.5
370,164 - -0.2
370,164 - -1.1
370,164 - -1.4
370,164 - +0.6
370,164 - -1.4
370,175 + +0.0
370,175 + +0.6
370,175 + +1.4
370,176 - -0.4
370,203 + OH686_01710 0.12 -0.5
370,203 + OH686_01710 0.12 -0.5
370,203 + OH686_01710 0.12 -0.7
370,203 + OH686_01710 0.12 -0.5
370,204 - OH686_01710 0.12 -0.3
370,204 - OH686_01710 0.12 -1.0
370,266 - OH686_01710 0.18 -0.9
370,403 + OH686_01710 0.32 -0.5
370,403 + OH686_01710 0.32 -0.7
370,403 + OH686_01710 0.32 -2.5
370,403 + OH686_01710 0.32 -0.4
370,403 + OH686_01710 0.32 +0.0
370,403 + OH686_01710 0.32 -0.5
370,404 - OH686_01710 0.32 -1.1
370,404 - OH686_01710 0.32 -0.3
370,404 - OH686_01710 0.32 -0.7
370,404 - OH686_01710 0.32 -0.4
370,404 - OH686_01710 0.32 -0.8
370,478 + OH686_01710 0.40 -0.9
370,478 + OH686_01710 0.40 -1.5
370,478 + OH686_01710 0.40 -0.7
370,479 - OH686_01710 0.40 -2.0
370,479 - OH686_01710 0.40 -1.8
370,479 - OH686_01710 0.40 -1.6
370,479 - OH686_01710 0.40 -0.4
370,556 + OH686_01710 0.47 +0.0
370,556 + OH686_01710 0.47 -2.0
370,556 + OH686_01710 0.47 -0.0
370,556 + OH686_01710 0.47 -0.7
370,556 + OH686_01710 0.47 -0.2
370,557 - OH686_01710 0.48 -2.3
370,557 - OH686_01710 0.48 -2.9
370,557 - OH686_01710 0.48 +0.5
370,557 - OH686_01710 0.48 -0.2
370,820 + OH686_01710 0.74 -1.0
370,820 + OH686_01710 0.74 -0.2
370,820 + OH686_01710 0.74 -0.8
370,821 - OH686_01710 0.74 -1.3
370,821 - OH686_01710 0.74 -2.5
370,841 + OH686_01710 0.76 -0.6
371,134 + +0.7
371,134 + -0.0
371,134 + +0.3
371,134 + -0.5
371,134 + +0.3
371,134 + -0.3
371,134 + -0.5
371,134 + -0.8
371,134 + -1.4
371,134 + +0.5
371,134 + -0.2
371,135 - -0.0
371,135 - +1.1
371,135 - +0.4
371,135 - -0.6
371,135 - +0.0
371,135 - +0.2
371,135 - +0.2
371,135 - +0.4
371,135 - -0.0
371,135 - +0.5
371,135 - -0.0
371,136 - -0.2
371,219 + +0.6
371,220 - -0.7
371,220 - -0.4
371,462 + OH686_01715 0.22 -0.5
371,463 - OH686_01715 0.22 -0.2
371,463 - OH686_01715 0.22 +0.5
371,490 + OH686_01715 0.24 -1.2
371,491 - OH686_01715 0.24 -2.3
371,491 - OH686_01715 0.24 -0.5
371,543 + OH686_01715 0.28 -0.4
371,543 + OH686_01715 0.28 -0.1
371,543 + OH686_01715 0.28 +0.5
371,544 - OH686_01715 0.28 -0.2
371,544 - OH686_01715 0.28 +0.5
371,544 - OH686_01715 0.28 -0.1
371,544 - OH686_01715 0.28 -0.3
371,544 - OH686_01715 0.28 -0.1
371,750 + OH686_01715 0.43 +0.9
371,750 + OH686_01715 0.43 -0.2
371,750 + OH686_01715 0.43 -0.0
371,750 + OH686_01715 0.43 +0.3
371,750 + OH686_01715 0.43 -0.1
371,750 + OH686_01715 0.43 -0.5
371,750 + OH686_01715 0.43 +0.9
371,750 + OH686_01715 0.43 -1.0
371,750 + OH686_01715 0.43 -1.0
371,750 + OH686_01715 0.43 +0.3
371,750 + OH686_01715 0.43 -0.4
371,750 + OH686_01715 0.43 +0.4
371,750 + OH686_01715 0.43 -0.3
371,751 - OH686_01715 0.43 -0.8
371,751 - OH686_01715 0.43 +0.4
371,751 - OH686_01715 0.43 +0.3
371,751 - OH686_01715 0.43 +0.8
371,751 - OH686_01715 0.43 +2.0
371,751 - OH686_01715 0.43 -2.0
371,751 - OH686_01715 0.43 +1.3
371,751 - OH686_01715 0.43 -0.7
371,751 - OH686_01715 0.43 -0.0
371,751 - OH686_01715 0.43 -2.4
371,751 - OH686_01715 0.43 -0.6
371,751 - OH686_01715 0.43 -0.2
371,751 - OH686_01715 0.43 +0.6
371,751 - OH686_01715 0.43 +0.4
371,751 - OH686_01715 0.43 -0.8
371,751 - OH686_01715 0.43 -0.4
371,752 + OH686_01715 0.43 -1.2
371,752 + OH686_01715 0.43 -2.1
371,772 - OH686_01715 0.45 -0.3
371,772 - OH686_01715 0.45 +0.6
371,772 - OH686_01715 0.45 -0.3

Or see this region's nucleotide sequence