Strain Fitness in Pseudomonas sp. S08-1 around OH686_01700

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01695 and OH686_01700 are separated by 283 nucleotidesOH686_01700 and OH686_01705 are separated by 5 nucleotides OH686_01695: OH686_01695 - Propionate catabolism operon transcriptional regulator of GntR family, at 367,009 to 367,731 _01695 OH686_01700: OH686_01700 - hypothetical protein, at 368,015 to 368,551 _01700 OH686_01705: OH686_01705 - hypothetical protein, at 368,557 to 370,083 _01705 Position (kb) 368 369Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 367.056 kb on - strandat 367.069 kb on - strandat 367.211 kb on + strand, within OH686_01695at 367.211 kb on + strand, within OH686_01695at 367.211 kb on + strand, within OH686_01695at 367.211 kb on + strand, within OH686_01695at 367.212 kb on - strand, within OH686_01695at 367.212 kb on - strand, within OH686_01695at 367.212 kb on - strand, within OH686_01695at 367.212 kb on - strand, within OH686_01695at 367.212 kb on - strand, within OH686_01695at 367.212 kb on - strand, within OH686_01695at 367.212 kb on - strand, within OH686_01695at 367.229 kb on + strand, within OH686_01695at 367.229 kb on + strand, within OH686_01695at 367.230 kb on - strand, within OH686_01695at 367.230 kb on - strand, within OH686_01695at 367.230 kb on - strand, within OH686_01695at 367.230 kb on - strand, within OH686_01695at 367.230 kb on - strand, within OH686_01695at 367.319 kb on + strand, within OH686_01695at 367.319 kb on + strand, within OH686_01695at 367.319 kb on + strand, within OH686_01695at 367.319 kb on + strand, within OH686_01695at 367.320 kb on - strand, within OH686_01695at 367.320 kb on - strand, within OH686_01695at 367.320 kb on - strand, within OH686_01695at 367.320 kb on - strand, within OH686_01695at 367.322 kb on + strand, within OH686_01695at 367.323 kb on - strand, within OH686_01695at 367.323 kb on - strand, within OH686_01695at 367.458 kb on - strand, within OH686_01695at 367.513 kb on + strand, within OH686_01695at 367.513 kb on + strand, within OH686_01695at 367.513 kb on + strand, within OH686_01695at 367.513 kb on + strand, within OH686_01695at 367.514 kb on - strand, within OH686_01695at 367.514 kb on - strand, within OH686_01695at 367.514 kb on - strand, within OH686_01695at 367.583 kb on + strand, within OH686_01695at 367.583 kb on + strand, within OH686_01695at 367.583 kb on + strand, within OH686_01695at 367.584 kb on - strand, within OH686_01695at 367.584 kb on - strand, within OH686_01695at 367.584 kb on - strand, within OH686_01695at 367.584 kb on - strand, within OH686_01695at 367.584 kb on - strand, within OH686_01695at 367.732 kb on + strandat 367.784 kb on + strandat 367.784 kb on + strandat 367.874 kb on + strandat 367.874 kb on + strandat 367.875 kb on - strandat 367.906 kb on + strandat 367.906 kb on + strandat 367.907 kb on - strandat 367.907 kb on - strandat 367.907 kb on - strandat 367.907 kb on - strandat 367.943 kb on + strandat 367.943 kb on + strandat 367.943 kb on + strandat 367.943 kb on + strandat 367.943 kb on + strandat 367.944 kb on - strandat 367.944 kb on - strandat 367.952 kb on + strandat 367.953 kb on - strandat 367.953 kb on - strandat 367.953 kb on - strandat 368.014 kb on + strandat 368.014 kb on + strandat 368.014 kb on + strandat 368.014 kb on + strandat 368.014 kb on + strandat 368.014 kb on + strandat 368.015 kb on - strandat 368.015 kb on - strandat 368.015 kb on - strandat 368.015 kb on - strandat 368.015 kb on - strandat 368.015 kb on - strandat 368.015 kb on - strandat 368.015 kb on - strandat 368.015 kb on - strandat 368.015 kb on - strandat 368.015 kb on - strandat 368.093 kb on + strand, within OH686_01700at 368.093 kb on - strand, within OH686_01700at 368.094 kb on - strand, within OH686_01700at 368.108 kb on + strand, within OH686_01700at 368.108 kb on + strand, within OH686_01700at 368.108 kb on + strand, within OH686_01700at 368.109 kb on - strand, within OH686_01700at 368.235 kb on - strand, within OH686_01700at 368.235 kb on - strand, within OH686_01700at 368.235 kb on - strand, within OH686_01700at 368.343 kb on - strand, within OH686_01700at 368.343 kb on - strand, within OH686_01700at 368.343 kb on - strand, within OH686_01700at 368.343 kb on - strand, within OH686_01700at 368.343 kb on - strand, within OH686_01700at 368.343 kb on - strand, within OH686_01700at 368.497 kb on + strand, within OH686_01700at 368.497 kb on + strand, within OH686_01700at 368.498 kb on - strandat 368.498 kb on - strandat 368.498 kb on - strandat 368.498 kb on - strandat 368.498 kb on - strandat 368.498 kb on - strandat 368.498 kb on - strandat 368.498 kb on - strandat 368.498 kb on - strandat 368.498 kb on - strandat 368.501 kb on + strandat 368.502 kb on - strandat 368.502 kb on - strandat 368.502 kb on - strandat 368.502 kb on - strandat 368.502 kb on - strandat 368.502 kb on - strandat 368.502 kb on - strandat 368.502 kb on - strandat 368.525 kb on - strandat 368.568 kb on + strandat 368.568 kb on + strandat 368.568 kb on + strandat 368.568 kb on + strandat 368.590 kb on - strandat 368.629 kb on + strandat 368.629 kb on + strandat 368.630 kb on - strandat 368.770 kb on + strand, within OH686_01705at 368.770 kb on + strand, within OH686_01705at 368.770 kb on + strand, within OH686_01705at 368.770 kb on + strand, within OH686_01705at 368.770 kb on + strand, within OH686_01705at 368.770 kb on + strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.771 kb on - strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.774 kb on + strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.775 kb on - strand, within OH686_01705at 368.807 kb on - strand, within OH686_01705at 368.807 kb on - strand, within OH686_01705at 368.807 kb on - strand, within OH686_01705at 368.807 kb on - strand, within OH686_01705at 368.807 kb on - strand, within OH686_01705at 368.841 kb on + strand, within OH686_01705at 368.841 kb on + strand, within OH686_01705at 368.841 kb on + strand, within OH686_01705at 368.841 kb on + strand, within OH686_01705at 368.842 kb on - strand, within OH686_01705at 368.842 kb on - strand, within OH686_01705at 368.887 kb on + strand, within OH686_01705at 368.887 kb on + strand, within OH686_01705at 368.888 kb on - strand, within OH686_01705at 368.888 kb on - strand, within OH686_01705at 368.888 kb on - strand, within OH686_01705at 368.888 kb on - strand, within OH686_01705at 368.888 kb on - strand, within OH686_01705at 368.890 kb on + strand, within OH686_01705at 368.891 kb on - strand, within OH686_01705at 368.914 kb on + strand, within OH686_01705at 369.265 kb on + strand, within OH686_01705at 369.265 kb on + strand, within OH686_01705at 369.265 kb on + strand, within OH686_01705at 369.266 kb on - strand, within OH686_01705at 369.457 kb on + strand, within OH686_01705at 369.458 kb on - strand, within OH686_01705at 369.466 kb on + strand, within OH686_01705at 369.467 kb on - strand, within OH686_01705at 369.496 kb on + strand, within OH686_01705at 369.496 kb on + strand, within OH686_01705at 369.496 kb on + strand, within OH686_01705at 369.496 kb on + strand, within OH686_01705at 369.496 kb on + strand, within OH686_01705at 369.497 kb on - strand, within OH686_01705at 369.497 kb on - strand, within OH686_01705at 369.497 kb on - strand, within OH686_01705

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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367,056 - +0.3
367,069 - +0.0
367,211 + OH686_01695 0.28 -0.4
367,211 + OH686_01695 0.28 -0.2
367,211 + OH686_01695 0.28 +0.6
367,211 + OH686_01695 0.28 +0.8
367,212 - OH686_01695 0.28 -0.3
367,212 - OH686_01695 0.28 -0.8
367,212 - OH686_01695 0.28 +0.7
367,212 - OH686_01695 0.28 -2.0
367,212 - OH686_01695 0.28 +0.7
367,212 - OH686_01695 0.28 -0.5
367,212 - OH686_01695 0.28 -0.5
367,229 + OH686_01695 0.30 -0.3
367,229 + OH686_01695 0.30 -0.0
367,230 - OH686_01695 0.31 +1.0
367,230 - OH686_01695 0.31 -1.5
367,230 - OH686_01695 0.31 +0.0
367,230 - OH686_01695 0.31 -0.3
367,230 - OH686_01695 0.31 +1.0
367,319 + OH686_01695 0.43 +0.6
367,319 + OH686_01695 0.43 -0.4
367,319 + OH686_01695 0.43 -0.6
367,319 + OH686_01695 0.43 +0.1
367,320 - OH686_01695 0.43 -0.7
367,320 - OH686_01695 0.43 -0.1
367,320 - OH686_01695 0.43 +0.5
367,320 - OH686_01695 0.43 -0.6
367,322 + OH686_01695 0.43 -2.5
367,323 - OH686_01695 0.43 -2.3
367,323 - OH686_01695 0.43 -0.2
367,458 - OH686_01695 0.62 -0.9
367,513 + OH686_01695 0.70 +0.6
367,513 + OH686_01695 0.70 -0.0
367,513 + OH686_01695 0.70 +1.0
367,513 + OH686_01695 0.70 +1.1
367,514 - OH686_01695 0.70 +0.5
367,514 - OH686_01695 0.70 -0.5
367,514 - OH686_01695 0.70 +0.2
367,583 + OH686_01695 0.79 +0.3
367,583 + OH686_01695 0.79 +0.8
367,583 + OH686_01695 0.79 -0.6
367,584 - OH686_01695 0.80 +0.5
367,584 - OH686_01695 0.80 -0.8
367,584 - OH686_01695 0.80 -0.3
367,584 - OH686_01695 0.80 +0.4
367,584 - OH686_01695 0.80 -0.2
367,732 + +0.0
367,784 + -0.1
367,784 + -0.5
367,874 + -0.6
367,874 + -0.1
367,875 - +0.5
367,906 + +0.4
367,906 + -0.4
367,907 - -0.3
367,907 - +1.4
367,907 - -0.7
367,907 - -0.5
367,943 + -0.1
367,943 + -0.3
367,943 + -0.2
367,943 + +0.1
367,943 + +0.2
367,944 - +0.5
367,944 - -0.1
367,952 + +0.4
367,953 - -1.2
367,953 - -1.0
367,953 - -1.0
368,014 + -0.0
368,014 + -1.8
368,014 + -0.0
368,014 + -0.8
368,014 + +0.1
368,014 + -0.9
368,015 - -0.5
368,015 - -0.4
368,015 - +0.5
368,015 - -0.5
368,015 - -0.5
368,015 - -1.4
368,015 - -0.2
368,015 - -0.6
368,015 - -0.5
368,015 - -0.3
368,015 - -1.5
368,093 + OH686_01700 0.15 -0.2
368,093 - OH686_01700 0.15 -0.4
368,094 - OH686_01700 0.15 +1.3
368,108 + OH686_01700 0.17 -0.5
368,108 + OH686_01700 0.17 +0.4
368,108 + OH686_01700 0.17 -0.2
368,109 - OH686_01700 0.18 -0.6
368,235 - OH686_01700 0.41 +0.1
368,235 - OH686_01700 0.41 -1.1
368,235 - OH686_01700 0.41 +0.2
368,343 - OH686_01700 0.61 -1.0
368,343 - OH686_01700 0.61 -1.2
368,343 - OH686_01700 0.61 -0.2
368,343 - OH686_01700 0.61 -1.5
368,343 - OH686_01700 0.61 -1.5
368,343 - OH686_01700 0.61 -1.5
368,497 + OH686_01700 0.90 -1.0
368,497 + OH686_01700 0.90 -1.0
368,498 - -1.3
368,498 - -0.9
368,498 - -1.2
368,498 - +0.1
368,498 - -1.0
368,498 - +0.1
368,498 - -1.0
368,498 - +0.8
368,498 - +0.7
368,498 - -0.6
368,501 + -3.3
368,502 - -0.9
368,502 - -0.5
368,502 - -1.5
368,502 - -0.4
368,502 - -1.5
368,502 - -0.9
368,502 - +0.1
368,502 - -1.5
368,525 - -1.2
368,568 + +0.4
368,568 + -1.6
368,568 + +0.3
368,568 + +0.5
368,590 - -0.2
368,629 + -0.9
368,629 + +1.3
368,630 - -1.8
368,770 + OH686_01705 0.14 -0.6
368,770 + OH686_01705 0.14 -1.5
368,770 + OH686_01705 0.14 -0.4
368,770 + OH686_01705 0.14 -0.6
368,770 + OH686_01705 0.14 -1.1
368,770 + OH686_01705 0.14 -1.1
368,771 - OH686_01705 0.14 -0.4
368,771 - OH686_01705 0.14 -0.4
368,771 - OH686_01705 0.14 +0.8
368,771 - OH686_01705 0.14 -0.3
368,771 - OH686_01705 0.14 -0.1
368,771 - OH686_01705 0.14 -1.5
368,771 - OH686_01705 0.14 -0.4
368,771 - OH686_01705 0.14 +0.6
368,771 - OH686_01705 0.14 +0.2
368,771 - OH686_01705 0.14 -0.8
368,771 - OH686_01705 0.14 -0.2
368,771 - OH686_01705 0.14 -1.7
368,771 - OH686_01705 0.14 -2.5
368,771 - OH686_01705 0.14 +0.2
368,771 - OH686_01705 0.14 -1.1
368,771 - OH686_01705 0.14 -1.0
368,774 + OH686_01705 0.14 -0.9
368,774 + OH686_01705 0.14 -1.8
368,774 + OH686_01705 0.14 -2.1
368,774 + OH686_01705 0.14 +0.4
368,774 + OH686_01705 0.14 -0.5
368,774 + OH686_01705 0.14 -0.9
368,774 + OH686_01705 0.14 -0.5
368,774 + OH686_01705 0.14 -1.0
368,774 + OH686_01705 0.14 +0.2
368,774 + OH686_01705 0.14 -0.2
368,774 + OH686_01705 0.14 -0.4
368,774 + OH686_01705 0.14 -1.8
368,774 + OH686_01705 0.14 -0.8
368,774 + OH686_01705 0.14 +1.2
368,774 + OH686_01705 0.14 -1.1
368,774 + OH686_01705 0.14 -0.2
368,774 + OH686_01705 0.14 -0.5
368,774 + OH686_01705 0.14 +0.1
368,774 + OH686_01705 0.14 -0.6
368,774 + OH686_01705 0.14 +0.5
368,774 + OH686_01705 0.14 -1.5
368,774 + OH686_01705 0.14 -0.3
368,774 + OH686_01705 0.14 -1.3
368,775 - OH686_01705 0.14 -0.3
368,775 - OH686_01705 0.14 -0.3
368,775 - OH686_01705 0.14 -2.4
368,775 - OH686_01705 0.14 -2.4
368,775 - OH686_01705 0.14 -0.3
368,775 - OH686_01705 0.14 -0.8
368,775 - OH686_01705 0.14 +1.8
368,775 - OH686_01705 0.14 +0.6
368,775 - OH686_01705 0.14 -1.8
368,775 - OH686_01705 0.14 +0.2
368,775 - OH686_01705 0.14 -0.4
368,775 - OH686_01705 0.14 +0.8
368,775 - OH686_01705 0.14 -1.4
368,775 - OH686_01705 0.14 +1.0
368,775 - OH686_01705 0.14 +0.8
368,775 - OH686_01705 0.14 -1.4
368,775 - OH686_01705 0.14 -0.4
368,775 - OH686_01705 0.14 +0.1
368,775 - OH686_01705 0.14 -0.0
368,775 - OH686_01705 0.14 -1.3
368,775 - OH686_01705 0.14 -0.3
368,775 - OH686_01705 0.14 -1.0
368,775 - OH686_01705 0.14 -1.0
368,807 - OH686_01705 0.16 -1.8
368,807 - OH686_01705 0.16 -0.3
368,807 - OH686_01705 0.16 -0.4
368,807 - OH686_01705 0.16 -0.4
368,807 - OH686_01705 0.16 -0.3
368,841 + OH686_01705 0.19 -1.5
368,841 + OH686_01705 0.19 -0.1
368,841 + OH686_01705 0.19 -3.5
368,841 + OH686_01705 0.19 +0.2
368,842 - OH686_01705 0.19 +0.1
368,842 - OH686_01705 0.19 -0.2
368,887 + OH686_01705 0.22 +0.9
368,887 + OH686_01705 0.22 -0.6
368,888 - OH686_01705 0.22 -1.3
368,888 - OH686_01705 0.22 -0.5
368,888 - OH686_01705 0.22 +1.0
368,888 - OH686_01705 0.22 -1.7
368,888 - OH686_01705 0.22 +0.8
368,890 + OH686_01705 0.22 -0.6
368,891 - OH686_01705 0.22 -0.4
368,914 + OH686_01705 0.23 -1.4
369,265 + OH686_01705 0.46 +0.6
369,265 + OH686_01705 0.46 +0.3
369,265 + OH686_01705 0.46 -0.8
369,266 - OH686_01705 0.46 -0.8
369,457 + OH686_01705 0.59 -0.8
369,458 - OH686_01705 0.59 -1.3
369,466 + OH686_01705 0.60 -1.0
369,467 - OH686_01705 0.60 -1.5
369,496 + OH686_01705 0.61 -0.6
369,496 + OH686_01705 0.61 -0.6
369,496 + OH686_01705 0.61 -0.5
369,496 + OH686_01705 0.61 -1.8
369,496 + OH686_01705 0.61 -0.6
369,497 - OH686_01705 0.62 -0.5
369,497 - OH686_01705 0.62 -0.5
369,497 - OH686_01705 0.62 -0.8

Or see this region's nucleotide sequence