Strain Fitness in Pseudomonas sp. S08-1 around OH686_01115

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01110 and OH686_01115 overlap by 4 nucleotidesOH686_01115 and OH686_01120 are separated by 2 nucleotidesOH686_01120 and OH686_01125 are separated by 132 nucleotidesOH686_01125 and OH686_01130 overlap by 4 nucleotides OH686_01110: OH686_01110 - putative baseplate assembly protein, at 252,419 to 254,989 _01110 OH686_01115: OH686_01115 - hypothetical protein, at 254,986 to 255,354 _01115 OH686_01120: OH686_01120 - hypothetical protein, at 255,357 to 255,677 _01120 OH686_01125: OH686_01125 - Protein previously called VgrG, at 255,810 to 256,322 _01125 OH686_01130: OH686_01130 - hypothetical protein, at 256,319 to 257,458 _01130 Position (kb) 254 255 256Strain fitness (log2 ratio) -3 -2 -1 0 1at 254.011 kb on + strand, within OH686_01110at 254.011 kb on + strand, within OH686_01110at 254.012 kb on - strand, within OH686_01110at 254.151 kb on + strand, within OH686_01110at 254.151 kb on + strand, within OH686_01110at 254.152 kb on - strand, within OH686_01110at 254.152 kb on - strand, within OH686_01110at 254.241 kb on + strand, within OH686_01110at 254.241 kb on + strand, within OH686_01110at 254.242 kb on - strand, within OH686_01110at 254.242 kb on - strand, within OH686_01110at 254.298 kb on + strand, within OH686_01110at 254.298 kb on + strand, within OH686_01110at 254.299 kb on - strand, within OH686_01110at 254.299 kb on - strand, within OH686_01110at 254.299 kb on - strand, within OH686_01110at 254.328 kb on + strand, within OH686_01110at 254.329 kb on - strand, within OH686_01110at 254.329 kb on - strand, within OH686_01110at 254.329 kb on - strand, within OH686_01110at 254.349 kb on + strand, within OH686_01110at 254.349 kb on + strand, within OH686_01110at 254.350 kb on - strand, within OH686_01110at 254.350 kb on - strand, within OH686_01110at 254.350 kb on - strand, within OH686_01110at 254.350 kb on - strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.472 kb on + strand, within OH686_01110at 254.473 kb on - strand, within OH686_01110at 254.473 kb on - strand, within OH686_01110at 254.473 kb on - strand, within OH686_01110at 254.473 kb on - strand, within OH686_01110at 254.640 kb on + strand, within OH686_01110at 254.641 kb on - strand, within OH686_01110at 254.641 kb on - strand, within OH686_01110at 254.641 kb on - strand, within OH686_01110at 254.806 kb on + strandat 254.806 kb on + strandat 254.806 kb on + strandat 254.806 kb on + strandat 254.807 kb on - strandat 254.807 kb on - strandat 254.916 kb on + strandat 254.916 kb on + strandat 254.917 kb on - strandat 254.917 kb on - strandat 254.982 kb on + strandat 254.982 kb on + strandat 254.982 kb on + strandat 254.983 kb on - strandat 254.983 kb on - strandat 254.983 kb on - strandat 254.983 kb on - strandat 254.983 kb on - strandat 254.983 kb on - strandat 255.047 kb on + strand, within OH686_01115at 255.329 kb on + strandat 255.330 kb on - strandat 255.404 kb on + strand, within OH686_01120at 255.404 kb on + strand, within OH686_01120at 255.442 kb on - strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.550 kb on + strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.551 kb on - strand, within OH686_01120at 255.678 kb on - strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.746 kb on + strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.747 kb on - strandat 255.756 kb on + strandat 255.756 kb on + strandat 255.757 kb on - strandat 255.757 kb on - strandat 255.812 kb on - strandat 255.812 kb on - strandat 255.812 kb on - strandat 255.855 kb on + strandat 255.855 kb on + strandat 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.892 kb on + strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 255.893 kb on - strand, within OH686_01125at 256.303 kb on + strandat 256.304 kb on - strandat 256.306 kb on + strandat 256.306 kb on + strandat 256.306 kb on + strandat 256.307 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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254,011 + OH686_01110 0.62 +0.2
254,011 + OH686_01110 0.62 -1.2
254,012 - OH686_01110 0.62 +0.1
254,151 + OH686_01110 0.67 -0.7
254,151 + OH686_01110 0.67 +0.2
254,152 - OH686_01110 0.67 -0.6
254,152 - OH686_01110 0.67 +0.8
254,241 + OH686_01110 0.71 -0.5
254,241 + OH686_01110 0.71 -0.2
254,242 - OH686_01110 0.71 -0.5
254,242 - OH686_01110 0.71 -0.7
254,298 + OH686_01110 0.73 -0.4
254,298 + OH686_01110 0.73 +0.4
254,299 - OH686_01110 0.73 -0.3
254,299 - OH686_01110 0.73 -0.3
254,299 - OH686_01110 0.73 +0.5
254,328 + OH686_01110 0.74 +0.1
254,329 - OH686_01110 0.74 -3.5
254,329 - OH686_01110 0.74 +0.6
254,329 - OH686_01110 0.74 -0.6
254,349 + OH686_01110 0.75 -0.1
254,349 + OH686_01110 0.75 +0.6
254,350 - OH686_01110 0.75 -2.6
254,350 - OH686_01110 0.75 -0.2
254,350 - OH686_01110 0.75 +1.5
254,350 - OH686_01110 0.75 +0.3
254,472 + OH686_01110 0.80 +0.1
254,472 + OH686_01110 0.80 +0.3
254,472 + OH686_01110 0.80 -0.6
254,472 + OH686_01110 0.80 -0.6
254,472 + OH686_01110 0.80 +0.1
254,472 + OH686_01110 0.80 -1.1
254,472 + OH686_01110 0.80 +0.1
254,473 - OH686_01110 0.80 +1.1
254,473 - OH686_01110 0.80 -0.9
254,473 - OH686_01110 0.80 -0.5
254,473 - OH686_01110 0.80 -0.2
254,640 + OH686_01110 0.86 -0.1
254,641 - OH686_01110 0.86 +0.2
254,641 - OH686_01110 0.86 +0.5
254,641 - OH686_01110 0.86 +0.7
254,806 + +0.0
254,806 + +0.9
254,806 + -0.1
254,806 + -0.6
254,807 - +0.7
254,807 - -0.3
254,916 + +0.5
254,916 + -0.5
254,917 - -0.3
254,917 - +0.5
254,982 + -0.9
254,982 + +0.4
254,982 + -0.1
254,983 - +0.5
254,983 - +0.5
254,983 - +0.2
254,983 - +1.0
254,983 - -0.0
254,983 - -0.2
255,047 + OH686_01115 0.17 +0.5
255,329 + -0.9
255,330 - +0.2
255,404 + OH686_01120 0.15 +0.2
255,404 + OH686_01120 0.15 -0.3
255,442 - OH686_01120 0.26 -0.3
255,550 + OH686_01120 0.60 +0.2
255,550 + OH686_01120 0.60 -0.1
255,550 + OH686_01120 0.60 +0.2
255,550 + OH686_01120 0.60 +0.1
255,550 + OH686_01120 0.60 -0.6
255,550 + OH686_01120 0.60 +0.6
255,551 - OH686_01120 0.60 +0.8
255,551 - OH686_01120 0.60 +0.2
255,551 - OH686_01120 0.60 -0.2
255,551 - OH686_01120 0.60 +0.6
255,551 - OH686_01120 0.60 -1.2
255,678 - +0.0
255,746 + +0.5
255,746 + -0.6
255,746 + -0.6
255,746 + +1.4
255,746 + -0.2
255,746 + -1.8
255,746 + +0.3
255,746 + -0.3
255,746 + +0.0
255,746 + -0.7
255,746 + -1.8
255,747 - -0.0
255,747 - -0.3
255,747 - +0.2
255,747 - -0.4
255,747 - +0.3
255,747 - -0.6
255,747 - -0.2
255,747 - +0.6
255,747 - -0.4
255,747 - -0.6
255,756 + -0.2
255,756 + +1.0
255,757 - +0.9
255,757 - +0.6
255,812 - +0.0
255,812 - +0.4
255,812 - +0.7
255,855 + +0.0
255,855 + -0.8
255,892 + OH686_01125 0.16 +0.1
255,892 + OH686_01125 0.16 -0.5
255,892 + OH686_01125 0.16 +1.2
255,892 + OH686_01125 0.16 -1.0
255,892 + OH686_01125 0.16 +1.4
255,892 + OH686_01125 0.16 -0.7
255,892 + OH686_01125 0.16 -0.4
255,892 + OH686_01125 0.16 -0.9
255,892 + OH686_01125 0.16 -1.3
255,892 + OH686_01125 0.16 -0.1
255,892 + OH686_01125 0.16 -0.5
255,892 + OH686_01125 0.16 -1.0
255,892 + OH686_01125 0.16 -0.4
255,892 + OH686_01125 0.16 +1.4
255,892 + OH686_01125 0.16 +0.7
255,892 + OH686_01125 0.16 +0.2
255,892 + OH686_01125 0.16 -0.7
255,892 + OH686_01125 0.16 +0.3
255,892 + OH686_01125 0.16 -0.1
255,892 + OH686_01125 0.16 +0.8
255,892 + OH686_01125 0.16 -0.1
255,893 - OH686_01125 0.16 -0.1
255,893 - OH686_01125 0.16 -1.0
255,893 - OH686_01125 0.16 +1.5
255,893 - OH686_01125 0.16 -0.0
255,893 - OH686_01125 0.16 -0.3
255,893 - OH686_01125 0.16 +0.7
255,893 - OH686_01125 0.16 -0.4
255,893 - OH686_01125 0.16 +1.5
255,893 - OH686_01125 0.16 -0.0
255,893 - OH686_01125 0.16 +0.5
255,893 - OH686_01125 0.16 +0.2
255,893 - OH686_01125 0.16 +0.3
255,893 - OH686_01125 0.16 -0.3
255,893 - OH686_01125 0.16 -0.3
255,893 - OH686_01125 0.16 -0.0
255,893 - OH686_01125 0.16 -0.5
255,893 - OH686_01125 0.16 +0.1
256,303 + +0.5
256,304 - -0.4
256,306 + -0.4
256,306 + -0.2
256,306 + -0.1
256,307 - +0.2

Or see this region's nucleotide sequence