Strain Fitness in Pseudomonas sp. S08-1 around OH686_00865

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00855 and OH686_00860 are separated by 30 nucleotidesOH686_00860 and OH686_00865 are separated by 118 nucleotidesOH686_00865 and OH686_00870 are separated by 10 nucleotides OH686_00855: OH686_00855 - Isovaleryl-CoA dehydrogenase , at 170,729 to 171,892 _00855 OH686_00860: OH686_00860 - Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family, at 171,923 to 172,321 _00860 OH686_00865: OH686_00865 - 3-hydroxyacyl-CoA dehydrogenase or 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, at 172,440 to 173,207 _00865 OH686_00870: OH686_00870 - 3-ketoacyl-CoA thiolase or Acetyl-CoA acetyltransferase , at 173,218 to 174,405 _00870 Position (kb) 172 173 174Strain fitness (log2 ratio) -2 -1 0 1 2at 171.549 kb on + strand, within OH686_00855at 171.549 kb on + strand, within OH686_00855at 171.549 kb on + strand, within OH686_00855at 171.549 kb on + strand, within OH686_00855at 171.549 kb on + strand, within OH686_00855at 171.549 kb on + strand, within OH686_00855at 171.549 kb on + strand, within OH686_00855at 171.549 kb on + strand, within OH686_00855at 171.549 kb on + strand, within OH686_00855at 171.549 kb on + strand, within OH686_00855at 171.549 kb on + strand, within OH686_00855at 171.550 kb on - strand, within OH686_00855at 171.550 kb on - strand, within OH686_00855at 171.550 kb on - strand, within OH686_00855at 171.550 kb on - strand, within OH686_00855at 171.550 kb on - strand, within OH686_00855at 171.550 kb on - strand, within OH686_00855at 171.550 kb on - strand, within OH686_00855at 171.618 kb on + strand, within OH686_00855at 171.619 kb on - strand, within OH686_00855at 171.619 kb on - strand, within OH686_00855at 171.619 kb on - strand, within OH686_00855at 171.681 kb on + strand, within OH686_00855at 171.681 kb on + strand, within OH686_00855at 171.682 kb on - strand, within OH686_00855at 171.682 kb on - strand, within OH686_00855at 171.682 kb on - strand, within OH686_00855at 171.682 kb on - strand, within OH686_00855at 171.682 kb on - strand, within OH686_00855at 171.682 kb on - strand, within OH686_00855at 171.688 kb on + strand, within OH686_00855at 171.688 kb on + strand, within OH686_00855at 171.689 kb on - strand, within OH686_00855at 171.702 kb on + strand, within OH686_00855at 171.702 kb on + strand, within OH686_00855at 171.702 kb on + strand, within OH686_00855at 171.830 kb on + strandat 171.830 kb on + strandat 171.830 kb on + strandat 171.830 kb on + strandat 171.830 kb on + strandat 171.831 kb on - strandat 171.831 kb on - strandat 171.831 kb on - strandat 171.831 kb on - strandat 171.831 kb on - strandat 171.831 kb on - strandat 171.831 kb on - strandat 171.831 kb on - strandat 172.107 kb on + strand, within OH686_00860at 172.108 kb on - strand, within OH686_00860at 172.108 kb on - strand, within OH686_00860at 172.108 kb on - strand, within OH686_00860at 172.108 kb on - strand, within OH686_00860at 172.200 kb on + strand, within OH686_00860at 172.201 kb on - strand, within OH686_00860at 172.201 kb on - strand, within OH686_00860at 172.201 kb on - strand, within OH686_00860at 172.251 kb on + strand, within OH686_00860at 172.251 kb on + strand, within OH686_00860at 172.251 kb on + strand, within OH686_00860at 172.251 kb on + strand, within OH686_00860at 172.252 kb on - strand, within OH686_00860at 172.252 kb on - strand, within OH686_00860at 172.308 kb on + strandat 172.308 kb on + strandat 172.308 kb on + strandat 172.308 kb on + strandat 172.308 kb on + strandat 172.308 kb on + strandat 172.308 kb on + strandat 172.308 kb on + strandat 172.308 kb on + strandat 172.309 kb on - strandat 172.309 kb on - strandat 172.309 kb on - strandat 172.309 kb on - strandat 172.309 kb on - strandat 172.309 kb on - strandat 172.309 kb on - strandat 172.309 kb on - strandat 172.309 kb on - strandat 172.309 kb on - strandat 172.309 kb on - strandat 172.309 kb on - strandat 172.353 kb on - strandat 172.353 kb on - strandat 172.678 kb on + strand, within OH686_00865at 172.679 kb on - strand, within OH686_00865at 173.115 kb on + strand, within OH686_00865at 173.135 kb on + strandat 173.136 kb on - strandat 173.240 kb on + strandat 173.240 kb on + strandat 173.240 kb on + strandat 173.240 kb on + strandat 173.241 kb on - strandat 173.241 kb on - strandat 173.590 kb on + strand, within OH686_00870at 173.590 kb on + strand, within OH686_00870at 173.590 kb on + strand, within OH686_00870at 173.590 kb on + strand, within OH686_00870at 173.591 kb on - strand, within OH686_00870at 173.591 kb on - strand, within OH686_00870at 173.649 kb on + strand, within OH686_00870at 173.649 kb on + strand, within OH686_00870at 173.649 kb on + strand, within OH686_00870at 173.649 kb on + strand, within OH686_00870at 173.649 kb on + strand, within OH686_00870at 173.649 kb on + strand, within OH686_00870at 173.649 kb on + strand, within OH686_00870at 173.649 kb on + strand, within OH686_00870at 173.649 kb on + strand, within OH686_00870at 173.649 kb on + strand, within OH686_00870at 173.649 kb on + strand, within OH686_00870at 173.649 kb on + strand, within OH686_00870at 173.649 kb on + strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.650 kb on - strand, within OH686_00870at 173.677 kb on + strand, within OH686_00870at 173.677 kb on + strand, within OH686_00870at 173.678 kb on - strand, within OH686_00870at 173.678 kb on - strand, within OH686_00870at 173.728 kb on + strand, within OH686_00870at 173.728 kb on + strand, within OH686_00870at 173.729 kb on - strand, within OH686_00870at 173.729 kb on - strand, within OH686_00870at 173.729 kb on - strand, within OH686_00870at 173.729 kb on - strand, within OH686_00870at 173.729 kb on - strand, within OH686_00870

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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171,549 + OH686_00855 0.70 -0.4
171,549 + OH686_00855 0.70 -0.9
171,549 + OH686_00855 0.70 +0.1
171,549 + OH686_00855 0.70 -0.1
171,549 + OH686_00855 0.70 +0.0
171,549 + OH686_00855 0.70 +0.2
171,549 + OH686_00855 0.70 -1.3
171,549 + OH686_00855 0.70 -0.5
171,549 + OH686_00855 0.70 -1.0
171,549 + OH686_00855 0.70 -0.2
171,549 + OH686_00855 0.70 -0.1
171,550 - OH686_00855 0.71 -1.4
171,550 - OH686_00855 0.71 -0.5
171,550 - OH686_00855 0.71 -1.1
171,550 - OH686_00855 0.71 -0.7
171,550 - OH686_00855 0.71 -0.6
171,550 - OH686_00855 0.71 +0.3
171,550 - OH686_00855 0.71 +0.9
171,618 + OH686_00855 0.76 -0.8
171,619 - OH686_00855 0.76 -0.9
171,619 - OH686_00855 0.76 -0.5
171,619 - OH686_00855 0.76 +1.2
171,681 + OH686_00855 0.82 -0.9
171,681 + OH686_00855 0.82 -1.3
171,682 - OH686_00855 0.82 +0.4
171,682 - OH686_00855 0.82 -0.2
171,682 - OH686_00855 0.82 -1.8
171,682 - OH686_00855 0.82 -1.5
171,682 - OH686_00855 0.82 -0.5
171,682 - OH686_00855 0.82 +0.1
171,688 + OH686_00855 0.82 -0.5
171,688 + OH686_00855 0.82 -1.5
171,689 - OH686_00855 0.82 -0.6
171,702 + OH686_00855 0.84 -1.0
171,702 + OH686_00855 0.84 -1.3
171,702 + OH686_00855 0.84 +0.8
171,830 + +0.8
171,830 + -0.8
171,830 + -0.5
171,830 + -1.7
171,830 + +0.0
171,831 - +0.2
171,831 - -0.6
171,831 - -0.3
171,831 - +1.3
171,831 - -1.4
171,831 - -0.2
171,831 - -0.1
171,831 - -1.1
172,107 + OH686_00860 0.46 -0.1
172,108 - OH686_00860 0.46 -1.0
172,108 - OH686_00860 0.46 -0.1
172,108 - OH686_00860 0.46 +0.1
172,108 - OH686_00860 0.46 -0.3
172,200 + OH686_00860 0.69 +0.7
172,201 - OH686_00860 0.70 +0.1
172,201 - OH686_00860 0.70 -1.3
172,201 - OH686_00860 0.70 -1.4
172,251 + OH686_00860 0.82 -0.5
172,251 + OH686_00860 0.82 +0.2
172,251 + OH686_00860 0.82 +1.0
172,251 + OH686_00860 0.82 +0.3
172,252 - OH686_00860 0.82 +1.0
172,252 - OH686_00860 0.82 -0.6
172,308 + +0.2
172,308 + +2.3
172,308 + +2.1
172,308 + -0.3
172,308 + +0.9
172,308 + -0.5
172,308 + -1.0
172,308 + +0.3
172,308 + -0.3
172,309 - +0.4
172,309 - -0.2
172,309 - -0.2
172,309 - +0.2
172,309 - +1.0
172,309 - +1.5
172,309 - -1.2
172,309 - +0.2
172,309 - +0.1
172,309 - +0.0
172,309 - -0.6
172,309 - -0.6
172,353 - -0.3
172,353 - -1.1
172,678 + OH686_00865 0.31 +1.3
172,679 - OH686_00865 0.31 +0.5
173,115 + OH686_00865 0.88 +0.1
173,135 + -0.5
173,136 - -1.1
173,240 + -0.8
173,240 + -0.2
173,240 + +1.3
173,240 + +0.0
173,241 - -1.2
173,241 - -0.7
173,590 + OH686_00870 0.31 -0.3
173,590 + OH686_00870 0.31 +0.3
173,590 + OH686_00870 0.31 +0.2
173,590 + OH686_00870 0.31 -1.7
173,591 - OH686_00870 0.31 +0.6
173,591 - OH686_00870 0.31 +0.3
173,649 + OH686_00870 0.36 -0.7
173,649 + OH686_00870 0.36 -0.0
173,649 + OH686_00870 0.36 -0.3
173,649 + OH686_00870 0.36 +0.4
173,649 + OH686_00870 0.36 -0.9
173,649 + OH686_00870 0.36 +0.2
173,649 + OH686_00870 0.36 -0.1
173,649 + OH686_00870 0.36 -0.1
173,649 + OH686_00870 0.36 -0.6
173,649 + OH686_00870 0.36 +1.4
173,649 + OH686_00870 0.36 +0.4
173,649 + OH686_00870 0.36 +0.5
173,649 + OH686_00870 0.36 +0.7
173,650 - OH686_00870 0.36 +0.2
173,650 - OH686_00870 0.36 +0.6
173,650 - OH686_00870 0.36 +1.3
173,650 - OH686_00870 0.36 -0.2
173,650 - OH686_00870 0.36 +0.7
173,650 - OH686_00870 0.36 -0.0
173,650 - OH686_00870 0.36 -1.1
173,650 - OH686_00870 0.36 +0.5
173,650 - OH686_00870 0.36 -1.2
173,650 - OH686_00870 0.36 +0.7
173,650 - OH686_00870 0.36 -0.2
173,650 - OH686_00870 0.36 -0.3
173,650 - OH686_00870 0.36 +1.1
173,650 - OH686_00870 0.36 +0.8
173,650 - OH686_00870 0.36 +0.1
173,650 - OH686_00870 0.36 -0.6
173,650 - OH686_00870 0.36 -0.7
173,650 - OH686_00870 0.36 +0.2
173,650 - OH686_00870 0.36 +0.3
173,650 - OH686_00870 0.36 -0.3
173,650 - OH686_00870 0.36 +0.2
173,677 + OH686_00870 0.39 -0.5
173,677 + OH686_00870 0.39 +0.4
173,678 - OH686_00870 0.39 +0.6
173,678 - OH686_00870 0.39 -0.6
173,728 + OH686_00870 0.43 -0.7
173,728 + OH686_00870 0.43 +0.8
173,729 - OH686_00870 0.43 +0.6
173,729 - OH686_00870 0.43 +0.5
173,729 - OH686_00870 0.43 -0.0
173,729 - OH686_00870 0.43 -0.5
173,729 - OH686_00870 0.43 -2.4

Or see this region's nucleotide sequence