Strain Fitness in Pseudomonas sp. S08-1 around OH686_00380

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00370 and OH686_00375 are separated by 48 nucleotidesOH686_00375 and OH686_00380 are separated by 122 nucleotidesOH686_00380 and OH686_00385 are separated by 136 nucleotidesOH686_00385 and OH686_00390 overlap by 4 nucleotides OH686_00370: OH686_00370 - hypothetical protein, at 69,814 to 70,224 _00370 OH686_00375: OH686_00375 - hypothetical protein, at 70,273 to 70,563 _00375 OH686_00380: OH686_00380 - hypothetical protein, at 70,686 to 70,952 _00380 OH686_00385: OH686_00385 - hypothetical protein, at 71,089 to 71,553 _00385 OH686_00390: OH686_00390 - hypothetical protein, at 71,550 to 71,996 _00390 Position (kb) 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 69.719 kb on + strandat 69.719 kb on + strandat 69.720 kb on - strandat 69.720 kb on - strandat 69.720 kb on - strandat 69.720 kb on - strandat 69.775 kb on + strandat 69.775 kb on + strandat 69.775 kb on + strandat 69.776 kb on - strandat 69.776 kb on - strandat 69.776 kb on - strandat 69.776 kb on - strandat 69.776 kb on - strandat 69.776 kb on - strandat 69.776 kb on - strandat 69.776 kb on - strandat 69.776 kb on - strandat 69.776 kb on - strandat 69.859 kb on + strand, within OH686_00370at 69.859 kb on + strand, within OH686_00370at 69.859 kb on + strand, within OH686_00370at 69.859 kb on + strand, within OH686_00370at 69.859 kb on + strand, within OH686_00370at 69.859 kb on + strand, within OH686_00370at 69.859 kb on + strand, within OH686_00370at 69.859 kb on + strand, within OH686_00370at 69.859 kb on + strand, within OH686_00370at 69.859 kb on + strand, within OH686_00370at 69.860 kb on - strand, within OH686_00370at 69.860 kb on - strand, within OH686_00370at 69.860 kb on - strand, within OH686_00370at 69.860 kb on - strand, within OH686_00370at 70.035 kb on + strand, within OH686_00370at 70.102 kb on + strand, within OH686_00370at 70.102 kb on + strand, within OH686_00370at 70.102 kb on + strand, within OH686_00370at 70.103 kb on - strand, within OH686_00370at 70.103 kb on - strand, within OH686_00370at 70.103 kb on - strand, within OH686_00370at 70.103 kb on - strand, within OH686_00370at 70.103 kb on - strand, within OH686_00370at 70.103 kb on - strand, within OH686_00370at 70.114 kb on + strand, within OH686_00370at 70.115 kb on - strand, within OH686_00370at 70.115 kb on - strand, within OH686_00370at 70.115 kb on - strand, within OH686_00370at 70.115 kb on - strand, within OH686_00370at 70.274 kb on + strandat 70.274 kb on + strandat 70.275 kb on - strandat 70.275 kb on - strandat 70.544 kb on + strandat 70.544 kb on + strandat 70.544 kb on + strandat 70.544 kb on + strandat 70.545 kb on - strandat 70.545 kb on - strandat 70.545 kb on - strandat 70.545 kb on - strandat 70.545 kb on - strandat 70.594 kb on + strandat 70.594 kb on + strandat 70.594 kb on + strandat 70.594 kb on + strandat 70.595 kb on - strandat 70.595 kb on - strandat 70.595 kb on - strandat 70.595 kb on - strandat 70.635 kb on - strandat 70.687 kb on + strandat 70.687 kb on + strandat 70.688 kb on - strandat 70.688 kb on - strandat 70.688 kb on - strandat 70.808 kb on + strand, within OH686_00380at 70.808 kb on + strand, within OH686_00380at 70.809 kb on - strand, within OH686_00380at 70.809 kb on - strand, within OH686_00380at 70.809 kb on - strand, within OH686_00380at 70.809 kb on - strand, within OH686_00380at 70.933 kb on + strandat 70.934 kb on - strandat 70.934 kb on - strandat 70.934 kb on - strandat 71.048 kb on + strandat 71.082 kb on - strandat 71.210 kb on - strand, within OH686_00385at 71.210 kb on - strand, within OH686_00385at 71.210 kb on - strand, within OH686_00385at 71.210 kb on - strand, within OH686_00385at 71.356 kb on + strand, within OH686_00385at 71.356 kb on + strand, within OH686_00385at 71.356 kb on + strand, within OH686_00385at 71.356 kb on + strand, within OH686_00385at 71.356 kb on + strand, within OH686_00385at 71.356 kb on + strand, within OH686_00385at 71.356 kb on + strand, within OH686_00385at 71.356 kb on + strand, within OH686_00385at 71.356 kb on + strand, within OH686_00385at 71.356 kb on + strand, within OH686_00385at 71.356 kb on + strand, within OH686_00385at 71.356 kb on + strand, within OH686_00385at 71.356 kb on + strand, within OH686_00385at 71.357 kb on - strand, within OH686_00385at 71.357 kb on - strand, within OH686_00385at 71.357 kb on - strand, within OH686_00385at 71.357 kb on - strand, within OH686_00385at 71.357 kb on - strand, within OH686_00385at 71.357 kb on - strand, within OH686_00385at 71.357 kb on - strand, within OH686_00385at 71.389 kb on + strand, within OH686_00385at 71.390 kb on - strand, within OH686_00385at 71.408 kb on - strand, within OH686_00385at 71.443 kb on + strand, within OH686_00385at 71.443 kb on + strand, within OH686_00385at 71.443 kb on + strand, within OH686_00385at 71.443 kb on + strand, within OH686_00385at 71.443 kb on + strand, within OH686_00385at 71.443 kb on + strand, within OH686_00385at 71.444 kb on - strand, within OH686_00385at 71.444 kb on - strand, within OH686_00385at 71.444 kb on - strand, within OH686_00385at 71.444 kb on - strand, within OH686_00385at 71.449 kb on + strand, within OH686_00385at 71.449 kb on + strand, within OH686_00385at 71.450 kb on - strand, within OH686_00385at 71.450 kb on - strand, within OH686_00385at 71.560 kb on + strandat 71.560 kb on + strandat 71.561 kb on - strandat 71.571 kb on - strandat 71.604 kb on + strand, within OH686_00390at 71.605 kb on - strand, within OH686_00390at 71.605 kb on - strand, within OH686_00390at 71.605 kb on - strand, within OH686_00390at 71.631 kb on + strand, within OH686_00390at 71.632 kb on - strand, within OH686_00390at 71.632 kb on - strand, within OH686_00390at 71.836 kb on + strand, within OH686_00390at 71.836 kb on + strand, within OH686_00390at 71.836 kb on + strand, within OH686_00390at 71.836 kb on + strand, within OH686_00390at 71.841 kb on + strand, within OH686_00390at 71.841 kb on + strand, within OH686_00390at 71.841 kb on + strand, within OH686_00390at 71.841 kb on + strand, within OH686_00390at 71.841 kb on + strand, within OH686_00390at 71.841 kb on + strand, within OH686_00390at 71.841 kb on + strand, within OH686_00390at 71.842 kb on - strand, within OH686_00390at 71.842 kb on - strand, within OH686_00390at 71.842 kb on - strand, within OH686_00390at 71.842 kb on - strand, within OH686_00390at 71.842 kb on - strand, within OH686_00390at 71.842 kb on - strand, within OH686_00390at 71.842 kb on - strand, within OH686_00390at 71.842 kb on - strand, within OH686_00390at 71.842 kb on - strand, within OH686_00390at 71.860 kb on - strand, within OH686_00390at 71.871 kb on + strand, within OH686_00390at 71.871 kb on + strand, within OH686_00390at 71.871 kb on + strand, within OH686_00390at 71.871 kb on + strand, within OH686_00390at 71.871 kb on + strand, within OH686_00390at 71.871 kb on + strand, within OH686_00390at 71.871 kb on + strand, within OH686_00390at 71.871 kb on + strand, within OH686_00390at 71.872 kb on - strand, within OH686_00390at 71.872 kb on - strand, within OH686_00390

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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69,719 + -1.2
69,719 + -0.1
69,720 - -0.6
69,720 - -0.2
69,720 - -0.2
69,720 - +1.1
69,775 + -1.9
69,775 + +0.1
69,775 + +0.8
69,776 - +0.2
69,776 - -0.6
69,776 - -0.2
69,776 - -0.0
69,776 - -0.6
69,776 - -0.0
69,776 - +0.7
69,776 - +0.6
69,776 - -0.4
69,776 - -3.2
69,859 + OH686_00370 0.11 -0.2
69,859 + OH686_00370 0.11 +0.1
69,859 + OH686_00370 0.11 +0.1
69,859 + OH686_00370 0.11 +0.2
69,859 + OH686_00370 0.11 +0.5
69,859 + OH686_00370 0.11 +0.1
69,859 + OH686_00370 0.11 +0.1
69,859 + OH686_00370 0.11 -0.1
69,859 + OH686_00370 0.11 -0.2
69,859 + OH686_00370 0.11 -1.7
69,860 - OH686_00370 0.11 -1.3
69,860 - OH686_00370 0.11 -0.6
69,860 - OH686_00370 0.11 +0.5
69,860 - OH686_00370 0.11 +0.3
70,035 + OH686_00370 0.54 +0.1
70,102 + OH686_00370 0.70 +0.8
70,102 + OH686_00370 0.70 +0.1
70,102 + OH686_00370 0.70 -1.0
70,103 - OH686_00370 0.70 +0.1
70,103 - OH686_00370 0.70 -1.7
70,103 - OH686_00370 0.70 +0.7
70,103 - OH686_00370 0.70 -0.1
70,103 - OH686_00370 0.70 +0.6
70,103 - OH686_00370 0.70 -0.7
70,114 + OH686_00370 0.73 +0.5
70,115 - OH686_00370 0.73 +2.3
70,115 - OH686_00370 0.73 +0.2
70,115 - OH686_00370 0.73 +0.0
70,115 - OH686_00370 0.73 +0.5
70,274 + +0.4
70,274 + +0.2
70,275 - +0.4
70,275 - +0.1
70,544 + +0.2
70,544 + +0.5
70,544 + -0.5
70,544 + -0.0
70,545 - -0.2
70,545 - +0.6
70,545 - -0.2
70,545 - -0.0
70,545 - +0.6
70,594 + -0.8
70,594 + +0.4
70,594 + -0.5
70,594 + +0.0
70,595 - +0.3
70,595 - +0.6
70,595 - -0.1
70,595 - -0.5
70,635 - -0.4
70,687 + +0.3
70,687 + +0.1
70,688 - +0.0
70,688 - +0.5
70,688 - +1.2
70,808 + OH686_00380 0.46 -0.2
70,808 + OH686_00380 0.46 +0.3
70,809 - OH686_00380 0.46 +0.6
70,809 - OH686_00380 0.46 +0.8
70,809 - OH686_00380 0.46 -1.0
70,809 - OH686_00380 0.46 +1.2
70,933 + -0.3
70,934 - -0.2
70,934 - +0.3
70,934 - -0.9
71,048 + +0.1
71,082 - -0.5
71,210 - OH686_00385 0.26 -0.5
71,210 - OH686_00385 0.26 -0.1
71,210 - OH686_00385 0.26 +1.8
71,210 - OH686_00385 0.26 -0.2
71,356 + OH686_00385 0.57 +1.1
71,356 + OH686_00385 0.57 +0.1
71,356 + OH686_00385 0.57 +1.3
71,356 + OH686_00385 0.57 -0.7
71,356 + OH686_00385 0.57 -0.6
71,356 + OH686_00385 0.57 -0.2
71,356 + OH686_00385 0.57 +0.8
71,356 + OH686_00385 0.57 +0.6
71,356 + OH686_00385 0.57 +0.4
71,356 + OH686_00385 0.57 -0.0
71,356 + OH686_00385 0.57 -0.1
71,356 + OH686_00385 0.57 +0.2
71,356 + OH686_00385 0.57 -0.5
71,357 - OH686_00385 0.58 +0.5
71,357 - OH686_00385 0.58 -0.2
71,357 - OH686_00385 0.58 +0.2
71,357 - OH686_00385 0.58 -0.8
71,357 - OH686_00385 0.58 +0.2
71,357 - OH686_00385 0.58 +0.6
71,357 - OH686_00385 0.58 +0.4
71,389 + OH686_00385 0.65 +0.1
71,390 - OH686_00385 0.65 -0.6
71,408 - OH686_00385 0.69 -0.1
71,443 + OH686_00385 0.76 +0.8
71,443 + OH686_00385 0.76 -0.3
71,443 + OH686_00385 0.76 +0.2
71,443 + OH686_00385 0.76 +1.0
71,443 + OH686_00385 0.76 +0.3
71,443 + OH686_00385 0.76 -0.6
71,444 - OH686_00385 0.76 -0.1
71,444 - OH686_00385 0.76 -0.3
71,444 - OH686_00385 0.76 +0.7
71,444 - OH686_00385 0.76 -0.4
71,449 + OH686_00385 0.77 -0.1
71,449 + OH686_00385 0.77 -0.1
71,450 - OH686_00385 0.78 -0.1
71,450 - OH686_00385 0.78 -0.2
71,560 + +0.3
71,560 + +0.5
71,561 - -0.5
71,571 - -0.4
71,604 + OH686_00390 0.12 +0.5
71,605 - OH686_00390 0.12 +0.7
71,605 - OH686_00390 0.12 -1.1
71,605 - OH686_00390 0.12 +0.3
71,631 + OH686_00390 0.18 -0.2
71,632 - OH686_00390 0.18 +0.2
71,632 - OH686_00390 0.18 +0.8
71,836 + OH686_00390 0.64 +0.4
71,836 + OH686_00390 0.64 -2.4
71,836 + OH686_00390 0.64 +0.4
71,836 + OH686_00390 0.64 +0.1
71,841 + OH686_00390 0.65 -1.5
71,841 + OH686_00390 0.65 +0.2
71,841 + OH686_00390 0.65 +0.3
71,841 + OH686_00390 0.65 +0.4
71,841 + OH686_00390 0.65 +0.3
71,841 + OH686_00390 0.65 +0.4
71,841 + OH686_00390 0.65 +0.4
71,842 - OH686_00390 0.65 +0.1
71,842 - OH686_00390 0.65 -0.0
71,842 - OH686_00390 0.65 +1.4
71,842 - OH686_00390 0.65 -0.4
71,842 - OH686_00390 0.65 -0.3
71,842 - OH686_00390 0.65 +0.7
71,842 - OH686_00390 0.65 -1.0
71,842 - OH686_00390 0.65 +0.3
71,842 - OH686_00390 0.65 -0.2
71,860 - OH686_00390 0.69 -0.5
71,871 + OH686_00390 0.72 -1.4
71,871 + OH686_00390 0.72 -0.1
71,871 + OH686_00390 0.72 +0.2
71,871 + OH686_00390 0.72 +0.2
71,871 + OH686_00390 0.72 +0.1
71,871 + OH686_00390 0.72 +0.4
71,871 + OH686_00390 0.72 -0.9
71,871 + OH686_00390 0.72 +0.3
71,872 - OH686_00390 0.72 -0.2
71,872 - OH686_00390 0.72 +0.3

Or see this region's nucleotide sequence