Strain Fitness in Pseudomonas sp. S08-1 around OH686_00100

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00095 and OH686_00100 are separated by 9 nucleotidesOH686_00100 and OH686_00105 are separated by 13 nucleotides OH686_00095: OH686_00095 - NADH-ubiquinone oxidoreductase chain N , at 18,140 to 19,618 _00095 OH686_00100: OH686_00100 - NADH-ubiquinone oxidoreductase chain M , at 19,628 to 21,157 _00100 OH686_00105: OH686_00105 - NADH-ubiquinone oxidoreductase chain L , at 21,171 to 23,021 _00105 Position (kb) 19 20 21 22Strain fitness (log2 ratio) -2 -1 0 1 2at 18.678 kb on + strand, within OH686_00095at 18.703 kb on - strand, within OH686_00095at 18.871 kb on + strand, within OH686_00095at 18.909 kb on + strand, within OH686_00095at 18.909 kb on + strand, within OH686_00095at 18.910 kb on - strand, within OH686_00095at 19.068 kb on + strand, within OH686_00095at 19.069 kb on - strand, within OH686_00095at 19.125 kb on + strand, within OH686_00095at 19.125 kb on + strand, within OH686_00095at 19.125 kb on + strand, within OH686_00095at 19.125 kb on + strand, within OH686_00095at 19.125 kb on + strand, within OH686_00095at 19.125 kb on + strand, within OH686_00095at 19.125 kb on + strand, within OH686_00095at 19.125 kb on + strand, within OH686_00095at 19.125 kb on + strand, within OH686_00095at 19.125 kb on + strand, within OH686_00095at 19.125 kb on + strand, within OH686_00095at 19.126 kb on - strand, within OH686_00095at 19.126 kb on - strand, within OH686_00095at 19.126 kb on - strand, within OH686_00095at 19.126 kb on - strand, within OH686_00095at 19.126 kb on - strand, within OH686_00095at 19.126 kb on - strand, within OH686_00095at 19.126 kb on - strand, within OH686_00095at 19.126 kb on - strand, within OH686_00095at 19.126 kb on - strand, within OH686_00095at 19.168 kb on - strand, within OH686_00095at 19.182 kb on + strand, within OH686_00095at 19.285 kb on - strand, within OH686_00095at 19.392 kb on + strand, within OH686_00095at 19.392 kb on + strand, within OH686_00095at 19.392 kb on + strand, within OH686_00095at 19.392 kb on + strand, within OH686_00095at 19.392 kb on + strand, within OH686_00095at 19.392 kb on + strand, within OH686_00095at 19.393 kb on - strand, within OH686_00095at 19.393 kb on - strand, within OH686_00095at 19.393 kb on - strand, within OH686_00095at 19.393 kb on - strand, within OH686_00095at 19.393 kb on - strand, within OH686_00095at 19.393 kb on - strand, within OH686_00095at 19.395 kb on + strand, within OH686_00095at 19.395 kb on + strand, within OH686_00095at 19.396 kb on - strand, within OH686_00095at 19.396 kb on - strand, within OH686_00095at 19.586 kb on + strandat 19.586 kb on + strandat 19.767 kb on + strandat 19.767 kb on + strandat 19.767 kb on + strandat 19.767 kb on + strandat 19.767 kb on + strandat 19.767 kb on + strandat 19.767 kb on + strandat 19.768 kb on - strandat 19.768 kb on - strandat 19.768 kb on - strandat 19.768 kb on - strandat 19.768 kb on - strandat 19.825 kb on - strand, within OH686_00100at 19.825 kb on - strand, within OH686_00100at 20.067 kb on + strand, within OH686_00100at 20.067 kb on + strand, within OH686_00100at 20.163 kb on + strand, within OH686_00100at 20.163 kb on + strand, within OH686_00100at 20.163 kb on + strand, within OH686_00100at 20.164 kb on - strand, within OH686_00100at 20.205 kb on + strand, within OH686_00100at 20.205 kb on + strand, within OH686_00100at 20.206 kb on - strand, within OH686_00100at 20.493 kb on + strand, within OH686_00100at 20.535 kb on + strand, within OH686_00100at 20.535 kb on + strand, within OH686_00100at 20.536 kb on - strand, within OH686_00100at 20.536 kb on - strand, within OH686_00100at 20.565 kb on + strand, within OH686_00100at 20.565 kb on + strand, within OH686_00100at 20.565 kb on + strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.566 kb on - strand, within OH686_00100at 20.703 kb on + strand, within OH686_00100at 20.703 kb on + strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 20.704 kb on - strand, within OH686_00100at 21.140 kb on + strandat 21.173 kb on - strandat 21.199 kb on - strandat 21.233 kb on - strandat 21.355 kb on + strandat 21.355 kb on + strandat 21.380 kb on - strand, within OH686_00105at 21.380 kb on - strand, within OH686_00105at 21.380 kb on - strand, within OH686_00105at 21.733 kb on + strand, within OH686_00105at 21.734 kb on - strand, within OH686_00105at 21.734 kb on - strand, within OH686_00105at 21.769 kb on + strand, within OH686_00105at 21.769 kb on + strand, within OH686_00105at 21.770 kb on - strand, within OH686_00105at 21.826 kb on + strand, within OH686_00105at 22.063 kb on + strand, within OH686_00105at 22.064 kb on - strand, within OH686_00105at 22.087 kb on + strand, within OH686_00105at 22.087 kb on + strand, within OH686_00105at 22.088 kb on - strand, within OH686_00105at 22.116 kb on + strand, within OH686_00105at 22.116 kb on + strand, within OH686_00105

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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18,678 + OH686_00095 0.36 +0.2
18,703 - OH686_00095 0.38 -1.8
18,871 + OH686_00095 0.49 +2.1
18,909 + OH686_00095 0.52 +0.1
18,909 + OH686_00095 0.52 -0.0
18,910 - OH686_00095 0.52 -0.2
19,068 + OH686_00095 0.63 +0.2
19,069 - OH686_00095 0.63 -0.2
19,125 + OH686_00095 0.67 -0.2
19,125 + OH686_00095 0.67 +0.9
19,125 + OH686_00095 0.67 +1.8
19,125 + OH686_00095 0.67 +0.4
19,125 + OH686_00095 0.67 +0.8
19,125 + OH686_00095 0.67 +1.6
19,125 + OH686_00095 0.67 -1.2
19,125 + OH686_00095 0.67 -0.8
19,125 + OH686_00095 0.67 -0.5
19,125 + OH686_00095 0.67 -0.5
19,125 + OH686_00095 0.67 -0.0
19,126 - OH686_00095 0.67 -0.4
19,126 - OH686_00095 0.67 +0.4
19,126 - OH686_00095 0.67 +0.8
19,126 - OH686_00095 0.67 -0.2
19,126 - OH686_00095 0.67 +0.5
19,126 - OH686_00095 0.67 -0.0
19,126 - OH686_00095 0.67 -0.5
19,126 - OH686_00095 0.67 -0.5
19,126 - OH686_00095 0.67 +1.0
19,168 - OH686_00095 0.70 +1.4
19,182 + OH686_00095 0.70 +1.4
19,285 - OH686_00095 0.77 -0.2
19,392 + OH686_00095 0.85 +0.8
19,392 + OH686_00095 0.85 +0.2
19,392 + OH686_00095 0.85 +0.8
19,392 + OH686_00095 0.85 -1.9
19,392 + OH686_00095 0.85 -0.5
19,392 + OH686_00095 0.85 -0.4
19,393 - OH686_00095 0.85 -0.5
19,393 - OH686_00095 0.85 -0.5
19,393 - OH686_00095 0.85 -1.8
19,393 - OH686_00095 0.85 +0.5
19,393 - OH686_00095 0.85 -0.5
19,393 - OH686_00095 0.85 -1.2
19,395 + OH686_00095 0.85 +1.4
19,395 + OH686_00095 0.85 -1.0
19,396 - OH686_00095 0.85 +1.8
19,396 - OH686_00095 0.85 -0.2
19,586 + -1.2
19,586 + -0.2
19,767 + -1.5
19,767 + +0.2
19,767 + -0.9
19,767 + +1.0
19,767 + +1.2
19,767 + -0.2
19,767 + +0.2
19,768 - +0.4
19,768 - -0.5
19,768 - +0.5
19,768 - +0.5
19,768 - -0.5
19,825 - OH686_00100 0.13 +0.8
19,825 - OH686_00100 0.13 -0.5
20,067 + OH686_00100 0.29 -1.0
20,067 + OH686_00100 0.29 -0.2
20,163 + OH686_00100 0.35 -0.8
20,163 + OH686_00100 0.35 -0.5
20,163 + OH686_00100 0.35 -0.5
20,164 - OH686_00100 0.35 -0.2
20,205 + OH686_00100 0.38 -0.5
20,205 + OH686_00100 0.38 -0.2
20,206 - OH686_00100 0.38 +0.8
20,493 + OH686_00100 0.57 -1.5
20,535 + OH686_00100 0.59 +0.8
20,535 + OH686_00100 0.59 -0.8
20,536 - OH686_00100 0.59 +0.3
20,536 - OH686_00100 0.59 -1.7
20,565 + OH686_00100 0.61 -0.5
20,565 + OH686_00100 0.61 -0.2
20,565 + OH686_00100 0.61 -0.0
20,566 - OH686_00100 0.61 -0.7
20,566 - OH686_00100 0.61 -1.2
20,566 - OH686_00100 0.61 -0.5
20,566 - OH686_00100 0.61 -0.8
20,566 - OH686_00100 0.61 +0.8
20,566 - OH686_00100 0.61 +0.8
20,566 - OH686_00100 0.61 -1.4
20,566 - OH686_00100 0.61 -0.2
20,566 - OH686_00100 0.61 +0.6
20,566 - OH686_00100 0.61 -0.5
20,566 - OH686_00100 0.61 +1.3
20,566 - OH686_00100 0.61 -1.2
20,703 + OH686_00100 0.70 -1.2
20,703 + OH686_00100 0.70 -0.8
20,704 - OH686_00100 0.70 -1.2
20,704 - OH686_00100 0.70 +0.5
20,704 - OH686_00100 0.70 -0.7
20,704 - OH686_00100 0.70 +0.5
20,704 - OH686_00100 0.70 +0.5
20,704 - OH686_00100 0.70 +1.1
20,704 - OH686_00100 0.70 +0.4
20,704 - OH686_00100 0.70 -0.5
20,704 - OH686_00100 0.70 -0.2
21,140 + -1.0
21,173 - -0.8
21,199 - +0.8
21,233 - +0.4
21,355 + -0.8
21,355 + -0.2
21,380 - OH686_00105 0.11 +0.8
21,380 - OH686_00105 0.11 -0.5
21,380 - OH686_00105 0.11 -1.0
21,733 + OH686_00105 0.30 +0.5
21,734 - OH686_00105 0.30 +1.2
21,734 - OH686_00105 0.30 -0.0
21,769 + OH686_00105 0.32 -1.2
21,769 + OH686_00105 0.32 -0.8
21,770 - OH686_00105 0.32 -0.8
21,826 + OH686_00105 0.35 +2.4
22,063 + OH686_00105 0.48 +1.2
22,064 - OH686_00105 0.48 -0.0
22,087 + OH686_00105 0.49 -2.1
22,087 + OH686_00105 0.49 -0.8
22,088 - OH686_00105 0.50 +0.8
22,116 + OH686_00105 0.51 +1.1
22,116 + OH686_00105 0.51 +1.5

Or see this region's nucleotide sequence