Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_R0075

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03276 and CCNA_R0075 are separated by 99 nucleotidesCCNA_R0075 and CCNA_03277 are separated by 44 nucleotides CCNA_03276: CCNA_03276 - glycerophosphoryl diester phosphodiesterase, at 3,442,782 to 3,443,771 _03276 CCNA_R0075: CCNA_R0075 - tRNA-Met, at 3,443,871 to 3,443,947 _R0075 CCNA_03277: CCNA_03277 - glycosyltransferase, at 3,443,992 to 3,445,041 _03277 Position (kb) 3443 3444Strain fitness (log2 ratio) -2 -1 0 1 2at 3442.880 kb on + strandat 3442.880 kb on + strandat 3442.947 kb on + strand, within CCNA_03276at 3442.953 kb on - strand, within CCNA_03276at 3442.994 kb on + strand, within CCNA_03276at 3443.001 kb on + strand, within CCNA_03276at 3443.008 kb on - strand, within CCNA_03276at 3443.013 kb on - strand, within CCNA_03276at 3443.027 kb on + strand, within CCNA_03276at 3443.030 kb on - strand, within CCNA_03276at 3443.114 kb on + strand, within CCNA_03276at 3443.166 kb on + strand, within CCNA_03276at 3443.174 kb on - strand, within CCNA_03276at 3443.211 kb on - strand, within CCNA_03276at 3443.211 kb on - strand, within CCNA_03276at 3443.287 kb on - strand, within CCNA_03276at 3443.287 kb on - strand, within CCNA_03276at 3443.287 kb on - strand, within CCNA_03276at 3443.399 kb on + strand, within CCNA_03276at 3443.400 kb on + strand, within CCNA_03276at 3443.417 kb on - strand, within CCNA_03276at 3443.450 kb on - strand, within CCNA_03276at 3443.471 kb on - strand, within CCNA_03276at 3443.519 kb on + strand, within CCNA_03276at 3443.520 kb on + strand, within CCNA_03276at 3443.527 kb on - strand, within CCNA_03276at 3443.576 kb on - strand, within CCNA_03276at 3443.599 kb on + strand, within CCNA_03276at 3443.599 kb on + strand, within CCNA_03276at 3443.599 kb on + strand, within CCNA_03276at 3443.601 kb on + strand, within CCNA_03276at 3443.601 kb on + strand, within CCNA_03276at 3443.609 kb on - strand, within CCNA_03276at 3443.620 kb on + strand, within CCNA_03276at 3443.636 kb on + strand, within CCNA_03276at 3443.644 kb on - strand, within CCNA_03276at 3443.660 kb on + strand, within CCNA_03276at 3443.697 kb on + strandat 3443.751 kb on + strandat 3443.756 kb on + strandat 3443.759 kb on - strandat 3443.759 kb on - strandat 3443.759 kb on - strandat 3443.769 kb on - strandat 3443.801 kb on - strandat 3443.802 kb on + strandat 3443.802 kb on + strandat 3443.802 kb on + strandat 3443.802 kb on + strandat 3443.802 kb on + strandat 3443.802 kb on + strandat 3443.803 kb on - strandat 3443.810 kb on - strandat 3443.810 kb on - strandat 3443.810 kb on - strandat 3443.810 kb on - strandat 3443.841 kb on - strandat 3443.922 kb on + strand, within CCNA_R0075at 3443.922 kb on + strand, within CCNA_R0075at 3443.935 kb on + strand, within CCNA_R0075at 3443.953 kb on - strandat 3443.990 kb on + strandat 3444.023 kb on + strandat 3444.042 kb on + strandat 3444.042 kb on + strandat 3444.080 kb on - strandat 3444.094 kb on + strandat 3444.113 kb on + strand, within CCNA_03277at 3444.152 kb on + strand, within CCNA_03277at 3444.233 kb on + strand, within CCNA_03277at 3444.270 kb on - strand, within CCNA_03277at 3444.270 kb on - strand, within CCNA_03277at 3444.270 kb on - strand, within CCNA_03277at 3444.275 kb on - strand, within CCNA_03277at 3444.353 kb on - strand, within CCNA_03277at 3444.433 kb on + strand, within CCNA_03277at 3444.459 kb on - strand, within CCNA_03277at 3444.491 kb on - strand, within CCNA_03277at 3444.654 kb on - strand, within CCNA_03277at 3444.669 kb on - strand, within CCNA_03277at 3444.671 kb on - strand, within CCNA_03277at 3444.797 kb on + strand, within CCNA_03277at 3444.797 kb on + strand, within CCNA_03277at 3444.797 kb on + strand, within CCNA_03277at 3444.797 kb on + strand, within CCNA_03277at 3444.805 kb on - strand, within CCNA_03277at 3444.805 kb on - strand, within CCNA_03277at 3444.805 kb on - strand, within CCNA_03277at 3444.805 kb on - strand, within CCNA_03277at 3444.842 kb on - strand, within CCNA_03277at 3444.855 kb on + strand, within CCNA_03277at 3444.878 kb on + strand, within CCNA_03277at 3444.886 kb on - strand, within CCNA_03277

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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3,442,880 + -1.7
3,442,880 + -0.8
3,442,947 + CCNA_03276 0.17 -0.7
3,442,953 - CCNA_03276 0.17 +2.2
3,442,994 + CCNA_03276 0.21 +0.7
3,443,001 + CCNA_03276 0.22 +1.1
3,443,008 - CCNA_03276 0.23 -0.4
3,443,013 - CCNA_03276 0.23 -1.6
3,443,027 + CCNA_03276 0.25 +1.4
3,443,030 - CCNA_03276 0.25 -0.2
3,443,114 + CCNA_03276 0.34 -0.7
3,443,166 + CCNA_03276 0.39 +0.8
3,443,174 - CCNA_03276 0.40 -0.1
3,443,211 - CCNA_03276 0.43 +0.1
3,443,211 - CCNA_03276 0.43 -0.5
3,443,287 - CCNA_03276 0.51 +0.0
3,443,287 - CCNA_03276 0.51 +0.2
3,443,287 - CCNA_03276 0.51 -0.5
3,443,399 + CCNA_03276 0.62 +0.2
3,443,400 + CCNA_03276 0.62 -0.3
3,443,417 - CCNA_03276 0.64 +0.1
3,443,450 - CCNA_03276 0.67 -1.2
3,443,471 - CCNA_03276 0.70 +0.1
3,443,519 + CCNA_03276 0.74 -0.9
3,443,520 + CCNA_03276 0.75 +1.0
3,443,527 - CCNA_03276 0.75 +0.9
3,443,576 - CCNA_03276 0.80 +0.9
3,443,599 + CCNA_03276 0.83 -0.1
3,443,599 + CCNA_03276 0.83 -0.9
3,443,599 + CCNA_03276 0.83 -0.2
3,443,601 + CCNA_03276 0.83 -0.0
3,443,601 + CCNA_03276 0.83 -0.9
3,443,609 - CCNA_03276 0.84 -0.4
3,443,620 + CCNA_03276 0.85 -0.3
3,443,636 + CCNA_03276 0.86 +0.1
3,443,644 - CCNA_03276 0.87 -0.3
3,443,660 + CCNA_03276 0.89 -1.3
3,443,697 + -0.9
3,443,751 + -0.4
3,443,756 + -0.8
3,443,759 - -2.2
3,443,759 - +0.6
3,443,759 - -0.4
3,443,769 - +0.4
3,443,801 - -0.2
3,443,802 + -1.1
3,443,802 + -0.4
3,443,802 + -1.3
3,443,802 + -0.4
3,443,802 + +0.0
3,443,802 + +0.4
3,443,803 - -0.3
3,443,810 - +0.5
3,443,810 - +0.9
3,443,810 - -0.3
3,443,810 - +0.7
3,443,841 - +0.7
3,443,922 + CCNA_R0075 0.66 -0.3
3,443,922 + CCNA_R0075 0.66 -0.1
3,443,935 + CCNA_R0075 0.83 -1.8
3,443,953 - +0.1
3,443,990 + -0.9
3,444,023 + +0.5
3,444,042 + -0.5
3,444,042 + +0.5
3,444,080 - -0.5
3,444,094 + +0.0
3,444,113 + CCNA_03277 0.12 -0.9
3,444,152 + CCNA_03277 0.15 -0.3
3,444,233 + CCNA_03277 0.23 -0.1
3,444,270 - CCNA_03277 0.26 -1.2
3,444,270 - CCNA_03277 0.26 -0.3
3,444,270 - CCNA_03277 0.26 +0.5
3,444,275 - CCNA_03277 0.27 -0.5
3,444,353 - CCNA_03277 0.34 -0.8
3,444,433 + CCNA_03277 0.42 +0.5
3,444,459 - CCNA_03277 0.44 -0.9
3,444,491 - CCNA_03277 0.48 -0.3
3,444,654 - CCNA_03277 0.63 -0.1
3,444,669 - CCNA_03277 0.64 -0.1
3,444,671 - CCNA_03277 0.65 +0.2
3,444,797 + CCNA_03277 0.77 +0.5
3,444,797 + CCNA_03277 0.77 +0.2
3,444,797 + CCNA_03277 0.77 -0.3
3,444,797 + CCNA_03277 0.77 -2.1
3,444,805 - CCNA_03277 0.77 -0.3
3,444,805 - CCNA_03277 0.77 -1.1
3,444,805 - CCNA_03277 0.77 -2.4
3,444,805 - CCNA_03277 0.77 -1.4
3,444,842 - CCNA_03277 0.81 +0.5
3,444,855 + CCNA_03277 0.82 +0.7
3,444,878 + CCNA_03277 0.84 +0.5
3,444,886 - CCNA_03277 0.85 -0.1

Or see this region's nucleotide sequence