Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_R0057

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02418 and CCNA_R0057 are separated by 140 nucleotidesCCNA_R0057 and CCNA_02419 are separated by 128 nucleotidesCCNA_02419 and CCNA_02420 are separated by 10 nucleotides CCNA_02418: CCNA_02418 - uracil DNA glycosylase superfamily protein, at 2,561,765 to 2,563,204 _02418 CCNA_R0057: CCNA_R0057 - tRNA-His, at 2,563,345 to 2,563,421 _R0057 CCNA_02419: CCNA_02419 - TonB1 protein, at 2,563,550 to 2,564,281 _02419 CCNA_02420: CCNA_02420 - TonB accessory protein exbD, at 2,564,292 to 2,564,726 _02420 Position (kb) 2563 2564Strain fitness (log2 ratio) -2 -1 0 1 2at 2562.353 kb on + strand, within CCNA_02418at 2562.366 kb on + strand, within CCNA_02418at 2562.386 kb on + strand, within CCNA_02418at 2562.397 kb on + strand, within CCNA_02418at 2562.404 kb on - strand, within CCNA_02418at 2562.404 kb on - strand, within CCNA_02418at 2562.405 kb on - strand, within CCNA_02418at 2562.436 kb on + strand, within CCNA_02418at 2562.441 kb on + strand, within CCNA_02418at 2562.441 kb on + strand, within CCNA_02418at 2562.451 kb on + strand, within CCNA_02418at 2562.451 kb on + strand, within CCNA_02418at 2562.456 kb on - strand, within CCNA_02418at 2562.459 kb on - strand, within CCNA_02418at 2562.468 kb on + strand, within CCNA_02418at 2562.476 kb on - strand, within CCNA_02418at 2562.486 kb on - strand, within CCNA_02418at 2562.486 kb on - strand, within CCNA_02418at 2562.496 kb on - strand, within CCNA_02418at 2562.511 kb on + strand, within CCNA_02418at 2562.511 kb on + strand, within CCNA_02418at 2562.511 kb on + strand, within CCNA_02418at 2562.591 kb on - strand, within CCNA_02418at 2562.627 kb on + strand, within CCNA_02418at 2562.704 kb on + strand, within CCNA_02418at 2562.722 kb on - strand, within CCNA_02418at 2562.735 kb on - strand, within CCNA_02418at 2562.764 kb on - strand, within CCNA_02418at 2562.766 kb on - strand, within CCNA_02418at 2562.779 kb on - strand, within CCNA_02418at 2562.784 kb on - strand, within CCNA_02418at 2562.858 kb on + strand, within CCNA_02418at 2562.894 kb on + strand, within CCNA_02418at 2562.894 kb on + strand, within CCNA_02418at 2562.902 kb on - strand, within CCNA_02418at 2562.913 kb on - strand, within CCNA_02418at 2562.957 kb on + strand, within CCNA_02418at 2562.977 kb on - strand, within CCNA_02418at 2563.012 kb on + strand, within CCNA_02418at 2563.020 kb on - strand, within CCNA_02418at 2563.020 kb on - strand, within CCNA_02418at 2563.030 kb on + strand, within CCNA_02418at 2563.056 kb on - strand, within CCNA_02418at 2563.062 kb on + strandat 2563.072 kb on - strandat 2563.072 kb on - strandat 2563.072 kb on - strandat 2563.072 kb on - strandat 2563.088 kb on - strandat 2563.141 kb on - strandat 2563.198 kb on + strandat 2563.513 kb on - strandat 2563.548 kb on - strandat 2563.583 kb on + strandat 2563.625 kb on - strand, within CCNA_02419at 2563.798 kb on - strand, within CCNA_02419at 2563.802 kb on + strand, within CCNA_02419at 2563.802 kb on + strand, within CCNA_02419at 2563.837 kb on - strand, within CCNA_02419at 2563.846 kb on - strand, within CCNA_02419at 2563.999 kb on - strand, within CCNA_02419at 2564.081 kb on + strand, within CCNA_02419at 2564.360 kb on + strand, within CCNA_02420

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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2,562,353 + CCNA_02418 0.41 -0.2
2,562,366 + CCNA_02418 0.42 +0.1
2,562,386 + CCNA_02418 0.43 +0.2
2,562,397 + CCNA_02418 0.44 -0.2
2,562,404 - CCNA_02418 0.44 +1.2
2,562,404 - CCNA_02418 0.44 +0.1
2,562,405 - CCNA_02418 0.44 -0.2
2,562,436 + CCNA_02418 0.47 -0.4
2,562,441 + CCNA_02418 0.47 -0.0
2,562,441 + CCNA_02418 0.47 -0.0
2,562,451 + CCNA_02418 0.48 +0.0
2,562,451 + CCNA_02418 0.48 -0.0
2,562,456 - CCNA_02418 0.48 -1.4
2,562,459 - CCNA_02418 0.48 +0.1
2,562,468 + CCNA_02418 0.49 +0.4
2,562,476 - CCNA_02418 0.49 -0.2
2,562,486 - CCNA_02418 0.50 +0.5
2,562,486 - CCNA_02418 0.50 +0.2
2,562,496 - CCNA_02418 0.51 +0.6
2,562,511 + CCNA_02418 0.52 +0.5
2,562,511 + CCNA_02418 0.52 +0.2
2,562,511 + CCNA_02418 0.52 -1.2
2,562,591 - CCNA_02418 0.57 +0.6
2,562,627 + CCNA_02418 0.60 +1.8
2,562,704 + CCNA_02418 0.65 -0.1
2,562,722 - CCNA_02418 0.66 +0.2
2,562,735 - CCNA_02418 0.67 +0.4
2,562,764 - CCNA_02418 0.69 +0.8
2,562,766 - CCNA_02418 0.70 +0.2
2,562,779 - CCNA_02418 0.70 -0.2
2,562,784 - CCNA_02418 0.71 -1.1
2,562,858 + CCNA_02418 0.76 +0.2
2,562,894 + CCNA_02418 0.78 +0.5
2,562,894 + CCNA_02418 0.78 +0.4
2,562,902 - CCNA_02418 0.79 +0.4
2,562,913 - CCNA_02418 0.80 +0.6
2,562,957 + CCNA_02418 0.83 -0.2
2,562,977 - CCNA_02418 0.84 -0.1
2,563,012 + CCNA_02418 0.87 -0.4
2,563,020 - CCNA_02418 0.87 +0.5
2,563,020 - CCNA_02418 0.87 +0.2
2,563,030 + CCNA_02418 0.88 +0.7
2,563,056 - CCNA_02418 0.90 +0.3
2,563,062 + -0.5
2,563,072 - +1.0
2,563,072 - -0.7
2,563,072 - -0.0
2,563,072 - -1.8
2,563,088 - +0.0
2,563,141 - +1.6
2,563,198 + +0.6
2,563,513 - +0.4
2,563,548 - -0.5
2,563,583 + +0.0
2,563,625 - CCNA_02419 0.10 +0.3
2,563,798 - CCNA_02419 0.34 +0.6
2,563,802 + CCNA_02419 0.34 -1.3
2,563,802 + CCNA_02419 0.34 -0.7
2,563,837 - CCNA_02419 0.39 +0.4
2,563,846 - CCNA_02419 0.40 +0.3
2,563,999 - CCNA_02419 0.61 +0.3
2,564,081 + CCNA_02419 0.73 -1.1
2,564,360 + CCNA_02420 0.16 +0.3

Or see this region's nucleotide sequence