Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02418 and CCNA_R0057 are separated by 140 nucleotides CCNA_R0057 and CCNA_02419 are separated by 128 nucleotides CCNA_02419 and CCNA_02420 are separated by 10 nucleotides
CCNA_02418: CCNA_02418 - uracil DNA glycosylase superfamily protein, at 2,561,765 to 2,563,204
_02418
CCNA_R0057: CCNA_R0057 - tRNA-His, at 2,563,345 to 2,563,421
_R0057
CCNA_02419: CCNA_02419 - TonB1 protein, at 2,563,550 to 2,564,281
_02419
CCNA_02420: CCNA_02420 - TonB accessory protein exbD, at 2,564,292 to 2,564,726
_02420
Position (kb)
2563
2564 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2562.353 kb on + strand, within CCNA_02418 at 2562.366 kb on + strand, within CCNA_02418 at 2562.386 kb on + strand, within CCNA_02418 at 2562.397 kb on + strand, within CCNA_02418 at 2562.404 kb on - strand, within CCNA_02418 at 2562.404 kb on - strand, within CCNA_02418 at 2562.405 kb on - strand, within CCNA_02418 at 2562.436 kb on + strand, within CCNA_02418 at 2562.441 kb on + strand, within CCNA_02418 at 2562.441 kb on + strand, within CCNA_02418 at 2562.451 kb on + strand, within CCNA_02418 at 2562.451 kb on + strand, within CCNA_02418 at 2562.456 kb on - strand, within CCNA_02418 at 2562.459 kb on - strand, within CCNA_02418 at 2562.468 kb on + strand, within CCNA_02418 at 2562.476 kb on - strand, within CCNA_02418 at 2562.486 kb on - strand, within CCNA_02418 at 2562.486 kb on - strand, within CCNA_02418 at 2562.496 kb on - strand, within CCNA_02418 at 2562.511 kb on + strand, within CCNA_02418 at 2562.511 kb on + strand, within CCNA_02418 at 2562.511 kb on + strand, within CCNA_02418 at 2562.591 kb on - strand, within CCNA_02418 at 2562.627 kb on + strand, within CCNA_02418 at 2562.704 kb on + strand, within CCNA_02418 at 2562.722 kb on - strand, within CCNA_02418 at 2562.735 kb on - strand, within CCNA_02418 at 2562.764 kb on - strand, within CCNA_02418 at 2562.766 kb on - strand, within CCNA_02418 at 2562.779 kb on - strand, within CCNA_02418 at 2562.784 kb on - strand, within CCNA_02418 at 2562.858 kb on + strand, within CCNA_02418 at 2562.894 kb on + strand, within CCNA_02418 at 2562.894 kb on + strand, within CCNA_02418 at 2562.902 kb on - strand, within CCNA_02418 at 2562.913 kb on - strand, within CCNA_02418 at 2562.957 kb on + strand, within CCNA_02418 at 2562.977 kb on - strand, within CCNA_02418 at 2563.012 kb on + strand, within CCNA_02418 at 2563.020 kb on - strand, within CCNA_02418 at 2563.020 kb on - strand, within CCNA_02418 at 2563.030 kb on + strand, within CCNA_02418 at 2563.056 kb on - strand, within CCNA_02418 at 2563.062 kb on + strand at 2563.072 kb on - strand at 2563.072 kb on - strand at 2563.072 kb on - strand at 2563.072 kb on - strand at 2563.088 kb on - strand at 2563.141 kb on - strand at 2563.198 kb on + strand at 2563.513 kb on - strand at 2563.548 kb on - strand at 2563.583 kb on + strand at 2563.625 kb on - strand, within CCNA_02419 at 2563.798 kb on - strand, within CCNA_02419 at 2563.802 kb on + strand, within CCNA_02419 at 2563.802 kb on + strand, within CCNA_02419 at 2563.837 kb on - strand, within CCNA_02419 at 2563.846 kb on - strand, within CCNA_02419 at 2563.999 kb on - strand, within CCNA_02419 at 2564.081 kb on + strand, within CCNA_02419 at 2564.360 kb on + strand, within CCNA_02420
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 2,562,353 + CCNA_02418 0.41 -0.2 2,562,366 + CCNA_02418 0.42 +0.1 2,562,386 + CCNA_02418 0.43 +0.2 2,562,397 + CCNA_02418 0.44 -0.2 2,562,404 - CCNA_02418 0.44 +1.2 2,562,404 - CCNA_02418 0.44 +0.1 2,562,405 - CCNA_02418 0.44 -0.2 2,562,436 + CCNA_02418 0.47 -0.4 2,562,441 + CCNA_02418 0.47 -0.0 2,562,441 + CCNA_02418 0.47 -0.0 2,562,451 + CCNA_02418 0.48 +0.0 2,562,451 + CCNA_02418 0.48 -0.0 2,562,456 - CCNA_02418 0.48 -1.4 2,562,459 - CCNA_02418 0.48 +0.1 2,562,468 + CCNA_02418 0.49 +0.4 2,562,476 - CCNA_02418 0.49 -0.2 2,562,486 - CCNA_02418 0.50 +0.5 2,562,486 - CCNA_02418 0.50 +0.2 2,562,496 - CCNA_02418 0.51 +0.6 2,562,511 + CCNA_02418 0.52 +0.5 2,562,511 + CCNA_02418 0.52 +0.2 2,562,511 + CCNA_02418 0.52 -1.2 2,562,591 - CCNA_02418 0.57 +0.6 2,562,627 + CCNA_02418 0.60 +1.8 2,562,704 + CCNA_02418 0.65 -0.1 2,562,722 - CCNA_02418 0.66 +0.2 2,562,735 - CCNA_02418 0.67 +0.4 2,562,764 - CCNA_02418 0.69 +0.8 2,562,766 - CCNA_02418 0.70 +0.2 2,562,779 - CCNA_02418 0.70 -0.2 2,562,784 - CCNA_02418 0.71 -1.1 2,562,858 + CCNA_02418 0.76 +0.2 2,562,894 + CCNA_02418 0.78 +0.5 2,562,894 + CCNA_02418 0.78 +0.4 2,562,902 - CCNA_02418 0.79 +0.4 2,562,913 - CCNA_02418 0.80 +0.6 2,562,957 + CCNA_02418 0.83 -0.2 2,562,977 - CCNA_02418 0.84 -0.1 2,563,012 + CCNA_02418 0.87 -0.4 2,563,020 - CCNA_02418 0.87 +0.5 2,563,020 - CCNA_02418 0.87 +0.2 2,563,030 + CCNA_02418 0.88 +0.7 2,563,056 - CCNA_02418 0.90 +0.3 2,563,062 + -0.5 2,563,072 - +1.0 2,563,072 - -0.7 2,563,072 - -0.0 2,563,072 - -1.8 2,563,088 - +0.0 2,563,141 - +1.6 2,563,198 + +0.6 2,563,513 - +0.4 2,563,548 - -0.5 2,563,583 + +0.0 2,563,625 - CCNA_02419 0.10 +0.3 2,563,798 - CCNA_02419 0.34 +0.6 2,563,802 + CCNA_02419 0.34 -1.3 2,563,802 + CCNA_02419 0.34 -0.7 2,563,837 - CCNA_02419 0.39 +0.4 2,563,846 - CCNA_02419 0.40 +0.3 2,563,999 - CCNA_02419 0.61 +0.3 2,564,081 + CCNA_02419 0.73 -1.1 2,564,360 + CCNA_02420 0.16 +0.3
Or see this region's nucleotide sequence