Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03987

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03193 and CCNA_03194 are separated by 13 nucleotidesCCNA_03194 and CCNA_03987 are separated by 84 nucleotidesCCNA_03987 and CCNA_03195 overlap by 4 nucleotides CCNA_03193: CCNA_03193 - lactoylglutathione lyase, at 3,354,463 to 3,355,041 _03193 CCNA_03194: CCNA_03194 - conserved inner membrane protein, at 3,355,055 to 3,355,417 _03194 CCNA_03987: CCNA_03987 - hypothetical protein, at 3,355,502 to 3,355,606 _03987 CCNA_03195: CCNA_03195 - RNA polymerase sigma factor RpoH, at 3,355,603 to 3,356,499 _03195 Position (kb) 3355 3356Strain fitness (log2 ratio) -3 -2 -1 0 1at 3354.537 kb on + strand, within CCNA_03193at 3354.542 kb on + strand, within CCNA_03193at 3354.550 kb on - strand, within CCNA_03193at 3354.652 kb on - strand, within CCNA_03193at 3354.652 kb on - strand, within CCNA_03193at 3354.720 kb on - strand, within CCNA_03193at 3354.746 kb on + strand, within CCNA_03193at 3354.754 kb on - strand, within CCNA_03193at 3354.754 kb on - strand, within CCNA_03193at 3354.767 kb on + strand, within CCNA_03193at 3354.767 kb on + strand, within CCNA_03193at 3354.767 kb on + strand, within CCNA_03193at 3354.767 kb on + strand, within CCNA_03193at 3354.767 kb on + strand, within CCNA_03193at 3354.775 kb on - strand, within CCNA_03193at 3354.775 kb on - strand, within CCNA_03193at 3354.828 kb on + strand, within CCNA_03193at 3354.887 kb on + strand, within CCNA_03193at 3354.887 kb on + strand, within CCNA_03193at 3354.895 kb on - strand, within CCNA_03193at 3354.895 kb on - strand, within CCNA_03193at 3354.895 kb on - strand, within CCNA_03193at 3354.917 kb on + strand, within CCNA_03193at 3354.960 kb on - strand, within CCNA_03193at 3354.960 kb on - strand, within CCNA_03193at 3354.962 kb on - strand, within CCNA_03193at 3355.013 kb on - strandat 3355.088 kb on - strandat 3355.091 kb on + strandat 3355.098 kb on - strand, within CCNA_03194at 3355.135 kb on - strand, within CCNA_03194at 3355.159 kb on + strand, within CCNA_03194at 3355.159 kb on + strand, within CCNA_03194at 3355.167 kb on - strand, within CCNA_03194at 3355.198 kb on + strand, within CCNA_03194at 3355.225 kb on + strand, within CCNA_03194at 3355.233 kb on - strand, within CCNA_03194at 3355.233 kb on - strand, within CCNA_03194at 3355.233 kb on - strand, within CCNA_03194at 3355.241 kb on + strand, within CCNA_03194at 3355.241 kb on + strand, within CCNA_03194at 3355.241 kb on + strand, within CCNA_03194at 3355.241 kb on + strand, within CCNA_03194at 3355.241 kb on + strand, within CCNA_03194at 3355.241 kb on + strand, within CCNA_03194at 3355.241 kb on + strand, within CCNA_03194at 3355.249 kb on - strand, within CCNA_03194at 3355.249 kb on - strand, within CCNA_03194at 3355.249 kb on - strand, within CCNA_03194at 3355.249 kb on - strand, within CCNA_03194at 3355.249 kb on - strand, within CCNA_03194at 3355.253 kb on + strand, within CCNA_03194at 3355.287 kb on - strand, within CCNA_03194at 3355.309 kb on - strand, within CCNA_03194at 3355.316 kb on + strand, within CCNA_03194at 3355.316 kb on + strand, within CCNA_03194at 3355.326 kb on + strand, within CCNA_03194at 3355.359 kb on - strand, within CCNA_03194at 3355.363 kb on - strand, within CCNA_03194at 3355.376 kb on + strand, within CCNA_03194at 3355.412 kb on + strandat 3355.412 kb on + strandat 3355.412 kb on + strandat 3355.412 kb on + strandat 3355.412 kb on + strandat 3355.420 kb on - strandat 3355.420 kb on - strandat 3355.425 kb on + strandat 3355.454 kb on - strandat 3355.513 kb on + strand, within CCNA_03987at 3355.523 kb on - strand, within CCNA_03987at 3355.537 kb on + strand, within CCNA_03987at 3355.538 kb on + strand, within CCNA_03987at 3355.566 kb on - strand, within CCNA_03987at 3355.625 kb on - strandat 3355.756 kb on + strand, within CCNA_03195at 3356.110 kb on + strand, within CCNA_03195at 3356.420 kb on + strandat 3356.448 kb on + strandat 3356.536 kb on + strandat 3356.536 kb on + strandat 3356.544 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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3,354,537 + CCNA_03193 0.13 +0.4
3,354,542 + CCNA_03193 0.14 -0.6
3,354,550 - CCNA_03193 0.15 +0.0
3,354,652 - CCNA_03193 0.33 -0.7
3,354,652 - CCNA_03193 0.33 -0.0
3,354,720 - CCNA_03193 0.44 -0.9
3,354,746 + CCNA_03193 0.49 +0.2
3,354,754 - CCNA_03193 0.50 -0.1
3,354,754 - CCNA_03193 0.50 +0.0
3,354,767 + CCNA_03193 0.53 +0.3
3,354,767 + CCNA_03193 0.53 +0.1
3,354,767 + CCNA_03193 0.53 -1.6
3,354,767 + CCNA_03193 0.53 -0.8
3,354,767 + CCNA_03193 0.53 +0.4
3,354,775 - CCNA_03193 0.54 -0.2
3,354,775 - CCNA_03193 0.54 +0.4
3,354,828 + CCNA_03193 0.63 +0.7
3,354,887 + CCNA_03193 0.73 +1.1
3,354,887 + CCNA_03193 0.73 -0.5
3,354,895 - CCNA_03193 0.75 +0.1
3,354,895 - CCNA_03193 0.75 -1.6
3,354,895 - CCNA_03193 0.75 -0.7
3,354,917 + CCNA_03193 0.78 -0.6
3,354,960 - CCNA_03193 0.86 +0.3
3,354,960 - CCNA_03193 0.86 +0.2
3,354,962 - CCNA_03193 0.86 +0.2
3,355,013 - -0.3
3,355,088 - -1.5
3,355,091 + -0.2
3,355,098 - CCNA_03194 0.12 -0.3
3,355,135 - CCNA_03194 0.22 -0.1
3,355,159 + CCNA_03194 0.29 -0.6
3,355,159 + CCNA_03194 0.29 -1.3
3,355,167 - CCNA_03194 0.31 -0.6
3,355,198 + CCNA_03194 0.39 -0.7
3,355,225 + CCNA_03194 0.47 -0.5
3,355,233 - CCNA_03194 0.49 +1.0
3,355,233 - CCNA_03194 0.49 +0.3
3,355,233 - CCNA_03194 0.49 +0.1
3,355,241 + CCNA_03194 0.51 -1.1
3,355,241 + CCNA_03194 0.51 +0.8
3,355,241 + CCNA_03194 0.51 -2.8
3,355,241 + CCNA_03194 0.51 -0.9
3,355,241 + CCNA_03194 0.51 -0.0
3,355,241 + CCNA_03194 0.51 -0.6
3,355,241 + CCNA_03194 0.51 -1.1
3,355,249 - CCNA_03194 0.53 -0.3
3,355,249 - CCNA_03194 0.53 +0.7
3,355,249 - CCNA_03194 0.53 -0.5
3,355,249 - CCNA_03194 0.53 -1.7
3,355,249 - CCNA_03194 0.53 +0.4
3,355,253 + CCNA_03194 0.55 -1.1
3,355,287 - CCNA_03194 0.64 -0.1
3,355,309 - CCNA_03194 0.70 -0.1
3,355,316 + CCNA_03194 0.72 -0.6
3,355,316 + CCNA_03194 0.72 +0.4
3,355,326 + CCNA_03194 0.75 -0.1
3,355,359 - CCNA_03194 0.84 +0.5
3,355,363 - CCNA_03194 0.85 -1.0
3,355,376 + CCNA_03194 0.88 +0.2
3,355,412 + +1.2
3,355,412 + -0.5
3,355,412 + -0.3
3,355,412 + -0.8
3,355,412 + -0.6
3,355,420 - -0.3
3,355,420 - -2.4
3,355,425 + -1.0
3,355,454 - +0.3
3,355,513 + CCNA_03987 0.10 -1.5
3,355,523 - CCNA_03987 0.20 -1.5
3,355,537 + CCNA_03987 0.33 +1.3
3,355,538 + CCNA_03987 0.34 -1.0
3,355,566 - CCNA_03987 0.61 -0.3
3,355,625 - -1.5
3,355,756 + CCNA_03195 0.17 -0.3
3,356,110 + CCNA_03195 0.57 +0.5
3,356,420 + -0.5
3,356,448 + +0.1
3,356,536 + +1.1
3,356,536 + +0.0
3,356,544 - -1.3

Or see this region's nucleotide sequence