Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03980

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02829 and CCNA_03980 overlap by 4 nucleotidesCCNA_03980 and CCNA_02830 are separated by 246 nucleotidesCCNA_02830 and CCNA_02831 are separated by 78 nucleotides CCNA_02829: CCNA_02829 - peptidase S8 family protein, at 2,983,414 to 2,984,598 _02829 CCNA_03980: CCNA_03980 - hypothetical protein, at 2,984,595 to 2,984,720 _03980 CCNA_02830: CCNA_02830 - MPN domain protein, at 2,984,967 to 2,985,137 _02830 CCNA_02831: CCNA_02831 - hypothetical protein, at 2,985,216 to 2,985,773 _02831 Position (kb) 2984 2985Strain fitness (log2 ratio) -2 -1 0 1 2at 2983.605 kb on + strand, within CCNA_02829at 2983.610 kb on + strand, within CCNA_02829at 2983.618 kb on - strand, within CCNA_02829at 2983.631 kb on + strand, within CCNA_02829at 2983.678 kb on + strand, within CCNA_02829at 2983.681 kb on - strand, within CCNA_02829at 2983.686 kb on - strand, within CCNA_02829at 2983.686 kb on - strand, within CCNA_02829at 2983.696 kb on + strand, within CCNA_02829at 2983.704 kb on + strand, within CCNA_02829at 2983.704 kb on - strand, within CCNA_02829at 2983.704 kb on - strand, within CCNA_02829at 2983.706 kb on + strand, within CCNA_02829at 2983.706 kb on + strand, within CCNA_02829at 2983.714 kb on - strand, within CCNA_02829at 2983.714 kb on - strand, within CCNA_02829at 2983.782 kb on + strand, within CCNA_02829at 2983.790 kb on - strand, within CCNA_02829at 2983.798 kb on + strand, within CCNA_02829at 2983.828 kb on + strand, within CCNA_02829at 2983.828 kb on + strand, within CCNA_02829at 2983.833 kb on + strand, within CCNA_02829at 2983.836 kb on - strand, within CCNA_02829at 2983.836 kb on - strand, within CCNA_02829at 2983.841 kb on - strand, within CCNA_02829at 2983.872 kb on - strand, within CCNA_02829at 2983.911 kb on + strand, within CCNA_02829at 2983.925 kb on + strand, within CCNA_02829at 2983.930 kb on + strand, within CCNA_02829at 2983.961 kb on + strand, within CCNA_02829at 2983.964 kb on - strand, within CCNA_02829at 2983.992 kb on + strand, within CCNA_02829at 2983.993 kb on + strand, within CCNA_02829at 2984.000 kb on - strand, within CCNA_02829at 2984.000 kb on - strand, within CCNA_02829at 2984.011 kb on - strand, within CCNA_02829at 2984.078 kb on - strand, within CCNA_02829at 2984.078 kb on - strand, within CCNA_02829at 2984.094 kb on - strand, within CCNA_02829at 2984.119 kb on - strand, within CCNA_02829at 2984.131 kb on + strand, within CCNA_02829at 2984.148 kb on + strand, within CCNA_02829at 2984.200 kb on - strand, within CCNA_02829at 2984.327 kb on + strand, within CCNA_02829at 2984.340 kb on - strand, within CCNA_02829at 2984.462 kb on + strand, within CCNA_02829at 2984.519 kb on + strandat 2984.519 kb on + strandat 2984.527 kb on - strandat 2984.540 kb on - strandat 2984.552 kb on - strandat 2984.588 kb on - strandat 2984.630 kb on - strand, within CCNA_03980at 2984.660 kb on - strand, within CCNA_03980at 2984.660 kb on - strand, within CCNA_03980at 2984.675 kb on + strand, within CCNA_03980at 2984.675 kb on + strand, within CCNA_03980at 2984.675 kb on + strand, within CCNA_03980at 2984.683 kb on - strand, within CCNA_03980at 2984.683 kb on - strand, within CCNA_03980at 2984.683 kb on - strand, within CCNA_03980at 2984.683 kb on - strand, within CCNA_03980at 2984.683 kb on - strand, within CCNA_03980at 2984.683 kb on - strand, within CCNA_03980at 2984.683 kb on - strand, within CCNA_03980at 2984.716 kb on - strandat 2984.739 kb on + strandat 2984.762 kb on + strandat 2984.772 kb on + strandat 2984.772 kb on + strandat 2984.772 kb on + strandat 2984.987 kb on + strand, within CCNA_02830at 2985.057 kb on + strand, within CCNA_02830at 2985.057 kb on + strand, within CCNA_02830at 2985.057 kb on + strand, within CCNA_02830at 2985.065 kb on - strand, within CCNA_02830at 2985.065 kb on - strand, within CCNA_02830at 2985.065 kb on - strand, within CCNA_02830at 2985.110 kb on - strand, within CCNA_02830at 2985.129 kb on - strandat 2985.207 kb on - strandat 2985.214 kb on - strandat 2985.214 kb on - strandat 2985.258 kb on + strandat 2985.269 kb on + strandat 2985.304 kb on - strand, within CCNA_02831at 2985.304 kb on - strand, within CCNA_02831at 2985.306 kb on + strand, within CCNA_02831at 2985.353 kb on - strand, within CCNA_02831at 2985.376 kb on + strand, within CCNA_02831at 2985.376 kb on + strand, within CCNA_02831at 2985.376 kb on + strand, within CCNA_02831at 2985.376 kb on + strand, within CCNA_02831at 2985.381 kb on + strand, within CCNA_02831at 2985.440 kb on + strand, within CCNA_02831at 2985.441 kb on + strand, within CCNA_02831at 2985.449 kb on - strand, within CCNA_02831at 2985.473 kb on + strand, within CCNA_02831at 2985.497 kb on + strand, within CCNA_02831at 2985.497 kb on + strand, within CCNA_02831at 2985.557 kb on - strand, within CCNA_02831at 2985.557 kb on - strand, within CCNA_02831at 2985.564 kb on - strand, within CCNA_02831at 2985.564 kb on - strand, within CCNA_02831at 2985.564 kb on - strand, within CCNA_02831at 2985.574 kb on + strand, within CCNA_02831at 2985.578 kb on + strand, within CCNA_02831at 2985.584 kb on + strand, within CCNA_02831at 2985.584 kb on + strand, within CCNA_02831at 2985.594 kb on + strand, within CCNA_02831at 2985.594 kb on + strand, within CCNA_02831at 2985.594 kb on + strand, within CCNA_02831at 2985.595 kb on + strand, within CCNA_02831at 2985.602 kb on - strand, within CCNA_02831at 2985.602 kb on - strand, within CCNA_02831at 2985.602 kb on - strand, within CCNA_02831at 2985.602 kb on - strand, within CCNA_02831at 2985.604 kb on + strand, within CCNA_02831at 2985.612 kb on - strand, within CCNA_02831at 2985.612 kb on - strand, within CCNA_02831at 2985.619 kb on + strand, within CCNA_02831at 2985.642 kb on + strand, within CCNA_02831at 2985.649 kb on + strand, within CCNA_02831at 2985.649 kb on + strand, within CCNA_02831at 2985.649 kb on + strand, within CCNA_02831at 2985.649 kb on + strand, within CCNA_02831at 2985.649 kb on + strand, within CCNA_02831at 2985.650 kb on - strand, within CCNA_02831at 2985.650 kb on - strand, within CCNA_02831at 2985.650 kb on - strand, within CCNA_02831at 2985.650 kb on - strand, within CCNA_02831at 2985.650 kb on - strand, within CCNA_02831at 2985.657 kb on - strand, within CCNA_02831at 2985.657 kb on - strand, within CCNA_02831at 2985.657 kb on - strand, within CCNA_02831at 2985.657 kb on - strand, within CCNA_02831at 2985.685 kb on + strand, within CCNA_02831at 2985.717 kb on - strand, within CCNA_02831at 2985.718 kb on + strandat 2985.719 kb on + strandat 2985.720 kb on + strandat 2985.720 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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2,983,605 + CCNA_02829 0.16 -0.2
2,983,610 + CCNA_02829 0.17 +2.0
2,983,618 - CCNA_02829 0.17 -0.9
2,983,631 + CCNA_02829 0.18 +0.4
2,983,678 + CCNA_02829 0.22 -0.1
2,983,681 - CCNA_02829 0.23 -0.6
2,983,686 - CCNA_02829 0.23 +0.5
2,983,686 - CCNA_02829 0.23 +0.2
2,983,696 + CCNA_02829 0.24 -0.1
2,983,704 + CCNA_02829 0.24 +0.2
2,983,704 - CCNA_02829 0.24 +0.6
2,983,704 - CCNA_02829 0.24 -0.2
2,983,706 + CCNA_02829 0.25 -0.1
2,983,706 + CCNA_02829 0.25 +0.1
2,983,714 - CCNA_02829 0.25 +0.9
2,983,714 - CCNA_02829 0.25 +0.2
2,983,782 + CCNA_02829 0.31 -1.5
2,983,790 - CCNA_02829 0.32 -0.3
2,983,798 + CCNA_02829 0.32 -1.0
2,983,828 + CCNA_02829 0.35 +0.3
2,983,828 + CCNA_02829 0.35 +0.3
2,983,833 + CCNA_02829 0.35 +0.2
2,983,836 - CCNA_02829 0.36 -1.3
2,983,836 - CCNA_02829 0.36 -1.0
2,983,841 - CCNA_02829 0.36 -0.2
2,983,872 - CCNA_02829 0.39 -0.0
2,983,911 + CCNA_02829 0.42 +0.7
2,983,925 + CCNA_02829 0.43 +0.3
2,983,930 + CCNA_02829 0.44 -0.8
2,983,961 + CCNA_02829 0.46 -0.3
2,983,964 - CCNA_02829 0.46 -1.4
2,983,992 + CCNA_02829 0.49 +1.0
2,983,993 + CCNA_02829 0.49 -0.9
2,984,000 - CCNA_02829 0.49 +0.2
2,984,000 - CCNA_02829 0.49 +0.1
2,984,011 - CCNA_02829 0.50 -0.2
2,984,078 - CCNA_02829 0.56 +0.0
2,984,078 - CCNA_02829 0.56 -0.2
2,984,094 - CCNA_02829 0.57 +0.7
2,984,119 - CCNA_02829 0.59 -0.4
2,984,131 + CCNA_02829 0.61 -0.4
2,984,148 + CCNA_02829 0.62 -1.3
2,984,200 - CCNA_02829 0.66 -0.4
2,984,327 + CCNA_02829 0.77 +0.1
2,984,340 - CCNA_02829 0.78 +0.2
2,984,462 + CCNA_02829 0.88 +0.3
2,984,519 + -2.0
2,984,519 + -0.6
2,984,527 - +0.6
2,984,540 - +0.6
2,984,552 - +0.6
2,984,588 - +0.2
2,984,630 - CCNA_03980 0.28 -1.1
2,984,660 - CCNA_03980 0.52 -0.4
2,984,660 - CCNA_03980 0.52 -0.0
2,984,675 + CCNA_03980 0.63 -1.6
2,984,675 + CCNA_03980 0.63 -1.0
2,984,675 + CCNA_03980 0.63 +0.2
2,984,683 - CCNA_03980 0.70 -0.8
2,984,683 - CCNA_03980 0.70 -0.0
2,984,683 - CCNA_03980 0.70 -0.9
2,984,683 - CCNA_03980 0.70 -0.1
2,984,683 - CCNA_03980 0.70 -1.1
2,984,683 - CCNA_03980 0.70 -1.0
2,984,683 - CCNA_03980 0.70 +0.3
2,984,716 - -1.0
2,984,739 + -0.2
2,984,762 + -0.3
2,984,772 + +0.1
2,984,772 + -0.5
2,984,772 + +1.9
2,984,987 + CCNA_02830 0.12 -0.2
2,985,057 + CCNA_02830 0.53 +0.1
2,985,057 + CCNA_02830 0.53 +0.0
2,985,057 + CCNA_02830 0.53 -0.7
2,985,065 - CCNA_02830 0.57 -1.4
2,985,065 - CCNA_02830 0.57 -0.5
2,985,065 - CCNA_02830 0.57 +0.1
2,985,110 - CCNA_02830 0.84 -0.1
2,985,129 - -0.9
2,985,207 - +0.0
2,985,214 - -0.9
2,985,214 - -0.2
2,985,258 + -0.7
2,985,269 + -1.0
2,985,304 - CCNA_02831 0.16 +0.5
2,985,304 - CCNA_02831 0.16 -1.6
2,985,306 + CCNA_02831 0.16 +0.0
2,985,353 - CCNA_02831 0.25 +0.4
2,985,376 + CCNA_02831 0.29 -0.1
2,985,376 + CCNA_02831 0.29 -0.3
2,985,376 + CCNA_02831 0.29 +0.2
2,985,376 + CCNA_02831 0.29 -0.8
2,985,381 + CCNA_02831 0.30 +0.5
2,985,440 + CCNA_02831 0.40 -1.6
2,985,441 + CCNA_02831 0.40 +0.0
2,985,449 - CCNA_02831 0.42 -0.5
2,985,473 + CCNA_02831 0.46 -0.4
2,985,497 + CCNA_02831 0.50 +0.3
2,985,497 + CCNA_02831 0.50 +0.8
2,985,557 - CCNA_02831 0.61 -0.3
2,985,557 - CCNA_02831 0.61 +1.1
2,985,564 - CCNA_02831 0.62 +0.4
2,985,564 - CCNA_02831 0.62 +0.8
2,985,564 - CCNA_02831 0.62 -1.3
2,985,574 + CCNA_02831 0.64 -0.2
2,985,578 + CCNA_02831 0.65 +1.1
2,985,584 + CCNA_02831 0.66 -0.1
2,985,584 + CCNA_02831 0.66 -0.7
2,985,594 + CCNA_02831 0.68 +0.6
2,985,594 + CCNA_02831 0.68 -0.2
2,985,594 + CCNA_02831 0.68 -0.2
2,985,595 + CCNA_02831 0.68 +0.4
2,985,602 - CCNA_02831 0.69 +0.9
2,985,602 - CCNA_02831 0.69 +1.1
2,985,602 - CCNA_02831 0.69 +0.7
2,985,602 - CCNA_02831 0.69 -0.5
2,985,604 + CCNA_02831 0.70 -2.2
2,985,612 - CCNA_02831 0.71 -0.2
2,985,612 - CCNA_02831 0.71 +0.9
2,985,619 + CCNA_02831 0.72 +0.5
2,985,642 + CCNA_02831 0.76 -0.1
2,985,649 + CCNA_02831 0.78 +0.2
2,985,649 + CCNA_02831 0.78 -0.4
2,985,649 + CCNA_02831 0.78 +0.9
2,985,649 + CCNA_02831 0.78 +0.7
2,985,649 + CCNA_02831 0.78 -0.0
2,985,650 - CCNA_02831 0.78 +1.7
2,985,650 - CCNA_02831 0.78 -0.6
2,985,650 - CCNA_02831 0.78 -1.2
2,985,650 - CCNA_02831 0.78 -1.0
2,985,650 - CCNA_02831 0.78 -0.0
2,985,657 - CCNA_02831 0.79 +0.7
2,985,657 - CCNA_02831 0.79 -0.4
2,985,657 - CCNA_02831 0.79 -0.5
2,985,657 - CCNA_02831 0.79 -0.7
2,985,685 + CCNA_02831 0.84 -0.1
2,985,717 - CCNA_02831 0.90 +0.5
2,985,718 + +0.3
2,985,719 + +1.0
2,985,720 + +0.4
2,985,720 + +1.2

Or see this region's nucleotide sequence