Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02829 and CCNA_03980 overlap by 4 nucleotides CCNA_03980 and CCNA_02830 are separated by 246 nucleotides CCNA_02830 and CCNA_02831 are separated by 78 nucleotides
CCNA_02829: CCNA_02829 - peptidase S8 family protein, at 2,983,414 to 2,984,598
_02829
CCNA_03980: CCNA_03980 - hypothetical protein, at 2,984,595 to 2,984,720
_03980
CCNA_02830: CCNA_02830 - MPN domain protein, at 2,984,967 to 2,985,137
_02830
CCNA_02831: CCNA_02831 - hypothetical protein, at 2,985,216 to 2,985,773
_02831
Position (kb)
2984
2985 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2983.605 kb on + strand, within CCNA_02829 at 2983.610 kb on + strand, within CCNA_02829 at 2983.618 kb on - strand, within CCNA_02829 at 2983.631 kb on + strand, within CCNA_02829 at 2983.678 kb on + strand, within CCNA_02829 at 2983.681 kb on - strand, within CCNA_02829 at 2983.686 kb on - strand, within CCNA_02829 at 2983.686 kb on - strand, within CCNA_02829 at 2983.696 kb on + strand, within CCNA_02829 at 2983.704 kb on + strand, within CCNA_02829 at 2983.704 kb on - strand, within CCNA_02829 at 2983.704 kb on - strand, within CCNA_02829 at 2983.706 kb on + strand, within CCNA_02829 at 2983.706 kb on + strand, within CCNA_02829 at 2983.714 kb on - strand, within CCNA_02829 at 2983.714 kb on - strand, within CCNA_02829 at 2983.782 kb on + strand, within CCNA_02829 at 2983.790 kb on - strand, within CCNA_02829 at 2983.798 kb on + strand, within CCNA_02829 at 2983.828 kb on + strand, within CCNA_02829 at 2983.828 kb on + strand, within CCNA_02829 at 2983.833 kb on + strand, within CCNA_02829 at 2983.836 kb on - strand, within CCNA_02829 at 2983.836 kb on - strand, within CCNA_02829 at 2983.841 kb on - strand, within CCNA_02829 at 2983.872 kb on - strand, within CCNA_02829 at 2983.911 kb on + strand, within CCNA_02829 at 2983.925 kb on + strand, within CCNA_02829 at 2983.930 kb on + strand, within CCNA_02829 at 2983.961 kb on + strand, within CCNA_02829 at 2983.964 kb on - strand, within CCNA_02829 at 2983.992 kb on + strand, within CCNA_02829 at 2983.993 kb on + strand, within CCNA_02829 at 2984.000 kb on - strand, within CCNA_02829 at 2984.000 kb on - strand, within CCNA_02829 at 2984.011 kb on - strand, within CCNA_02829 at 2984.078 kb on - strand, within CCNA_02829 at 2984.078 kb on - strand, within CCNA_02829 at 2984.094 kb on - strand, within CCNA_02829 at 2984.119 kb on - strand, within CCNA_02829 at 2984.131 kb on + strand, within CCNA_02829 at 2984.148 kb on + strand, within CCNA_02829 at 2984.200 kb on - strand, within CCNA_02829 at 2984.327 kb on + strand, within CCNA_02829 at 2984.340 kb on - strand, within CCNA_02829 at 2984.462 kb on + strand, within CCNA_02829 at 2984.519 kb on + strand at 2984.519 kb on + strand at 2984.527 kb on - strand at 2984.540 kb on - strand at 2984.552 kb on - strand at 2984.588 kb on - strand at 2984.630 kb on - strand, within CCNA_03980 at 2984.660 kb on - strand, within CCNA_03980 at 2984.660 kb on - strand, within CCNA_03980 at 2984.675 kb on + strand, within CCNA_03980 at 2984.675 kb on + strand, within CCNA_03980 at 2984.675 kb on + strand, within CCNA_03980 at 2984.683 kb on - strand, within CCNA_03980 at 2984.683 kb on - strand, within CCNA_03980 at 2984.683 kb on - strand, within CCNA_03980 at 2984.683 kb on - strand, within CCNA_03980 at 2984.683 kb on - strand, within CCNA_03980 at 2984.683 kb on - strand, within CCNA_03980 at 2984.683 kb on - strand, within CCNA_03980 at 2984.716 kb on - strand at 2984.739 kb on + strand at 2984.762 kb on + strand at 2984.772 kb on + strand at 2984.772 kb on + strand at 2984.772 kb on + strand at 2984.987 kb on + strand, within CCNA_02830 at 2985.057 kb on + strand, within CCNA_02830 at 2985.057 kb on + strand, within CCNA_02830 at 2985.057 kb on + strand, within CCNA_02830 at 2985.065 kb on - strand, within CCNA_02830 at 2985.065 kb on - strand, within CCNA_02830 at 2985.065 kb on - strand, within CCNA_02830 at 2985.110 kb on - strand, within CCNA_02830 at 2985.129 kb on - strand at 2985.207 kb on - strand at 2985.214 kb on - strand at 2985.214 kb on - strand at 2985.258 kb on + strand at 2985.269 kb on + strand at 2985.304 kb on - strand, within CCNA_02831 at 2985.304 kb on - strand, within CCNA_02831 at 2985.306 kb on + strand, within CCNA_02831 at 2985.353 kb on - strand, within CCNA_02831 at 2985.376 kb on + strand, within CCNA_02831 at 2985.376 kb on + strand, within CCNA_02831 at 2985.376 kb on + strand, within CCNA_02831 at 2985.376 kb on + strand, within CCNA_02831 at 2985.381 kb on + strand, within CCNA_02831 at 2985.440 kb on + strand, within CCNA_02831 at 2985.441 kb on + strand, within CCNA_02831 at 2985.449 kb on - strand, within CCNA_02831 at 2985.473 kb on + strand, within CCNA_02831 at 2985.497 kb on + strand, within CCNA_02831 at 2985.497 kb on + strand, within CCNA_02831 at 2985.557 kb on - strand, within CCNA_02831 at 2985.557 kb on - strand, within CCNA_02831 at 2985.564 kb on - strand, within CCNA_02831 at 2985.564 kb on - strand, within CCNA_02831 at 2985.564 kb on - strand, within CCNA_02831 at 2985.574 kb on + strand, within CCNA_02831 at 2985.578 kb on + strand, within CCNA_02831 at 2985.584 kb on + strand, within CCNA_02831 at 2985.584 kb on + strand, within CCNA_02831 at 2985.594 kb on + strand, within CCNA_02831 at 2985.594 kb on + strand, within CCNA_02831 at 2985.594 kb on + strand, within CCNA_02831 at 2985.595 kb on + strand, within CCNA_02831 at 2985.602 kb on - strand, within CCNA_02831 at 2985.602 kb on - strand, within CCNA_02831 at 2985.602 kb on - strand, within CCNA_02831 at 2985.602 kb on - strand, within CCNA_02831 at 2985.604 kb on + strand, within CCNA_02831 at 2985.612 kb on - strand, within CCNA_02831 at 2985.612 kb on - strand, within CCNA_02831 at 2985.619 kb on + strand, within CCNA_02831 at 2985.642 kb on + strand, within CCNA_02831 at 2985.649 kb on + strand, within CCNA_02831 at 2985.649 kb on + strand, within CCNA_02831 at 2985.649 kb on + strand, within CCNA_02831 at 2985.649 kb on + strand, within CCNA_02831 at 2985.649 kb on + strand, within CCNA_02831 at 2985.650 kb on - strand, within CCNA_02831 at 2985.650 kb on - strand, within CCNA_02831 at 2985.650 kb on - strand, within CCNA_02831 at 2985.650 kb on - strand, within CCNA_02831 at 2985.650 kb on - strand, within CCNA_02831 at 2985.657 kb on - strand, within CCNA_02831 at 2985.657 kb on - strand, within CCNA_02831 at 2985.657 kb on - strand, within CCNA_02831 at 2985.657 kb on - strand, within CCNA_02831 at 2985.685 kb on + strand, within CCNA_02831 at 2985.717 kb on - strand, within CCNA_02831 at 2985.718 kb on + strand at 2985.719 kb on + strand at 2985.720 kb on + strand at 2985.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 2,983,605 + CCNA_02829 0.16 -0.2 2,983,610 + CCNA_02829 0.17 +2.0 2,983,618 - CCNA_02829 0.17 -0.9 2,983,631 + CCNA_02829 0.18 +0.4 2,983,678 + CCNA_02829 0.22 -0.1 2,983,681 - CCNA_02829 0.23 -0.6 2,983,686 - CCNA_02829 0.23 +0.5 2,983,686 - CCNA_02829 0.23 +0.2 2,983,696 + CCNA_02829 0.24 -0.1 2,983,704 + CCNA_02829 0.24 +0.2 2,983,704 - CCNA_02829 0.24 +0.6 2,983,704 - CCNA_02829 0.24 -0.2 2,983,706 + CCNA_02829 0.25 -0.1 2,983,706 + CCNA_02829 0.25 +0.1 2,983,714 - CCNA_02829 0.25 +0.9 2,983,714 - CCNA_02829 0.25 +0.2 2,983,782 + CCNA_02829 0.31 -1.5 2,983,790 - CCNA_02829 0.32 -0.3 2,983,798 + CCNA_02829 0.32 -1.0 2,983,828 + CCNA_02829 0.35 +0.3 2,983,828 + CCNA_02829 0.35 +0.3 2,983,833 + CCNA_02829 0.35 +0.2 2,983,836 - CCNA_02829 0.36 -1.3 2,983,836 - CCNA_02829 0.36 -1.0 2,983,841 - CCNA_02829 0.36 -0.2 2,983,872 - CCNA_02829 0.39 -0.0 2,983,911 + CCNA_02829 0.42 +0.7 2,983,925 + CCNA_02829 0.43 +0.3 2,983,930 + CCNA_02829 0.44 -0.8 2,983,961 + CCNA_02829 0.46 -0.3 2,983,964 - CCNA_02829 0.46 -1.4 2,983,992 + CCNA_02829 0.49 +1.0 2,983,993 + CCNA_02829 0.49 -0.9 2,984,000 - CCNA_02829 0.49 +0.2 2,984,000 - CCNA_02829 0.49 +0.1 2,984,011 - CCNA_02829 0.50 -0.2 2,984,078 - CCNA_02829 0.56 +0.0 2,984,078 - CCNA_02829 0.56 -0.2 2,984,094 - CCNA_02829 0.57 +0.7 2,984,119 - CCNA_02829 0.59 -0.4 2,984,131 + CCNA_02829 0.61 -0.4 2,984,148 + CCNA_02829 0.62 -1.3 2,984,200 - CCNA_02829 0.66 -0.4 2,984,327 + CCNA_02829 0.77 +0.1 2,984,340 - CCNA_02829 0.78 +0.2 2,984,462 + CCNA_02829 0.88 +0.3 2,984,519 + -2.0 2,984,519 + -0.6 2,984,527 - +0.6 2,984,540 - +0.6 2,984,552 - +0.6 2,984,588 - +0.2 2,984,630 - CCNA_03980 0.28 -1.1 2,984,660 - CCNA_03980 0.52 -0.4 2,984,660 - CCNA_03980 0.52 -0.0 2,984,675 + CCNA_03980 0.63 -1.6 2,984,675 + CCNA_03980 0.63 -1.0 2,984,675 + CCNA_03980 0.63 +0.2 2,984,683 - CCNA_03980 0.70 -0.8 2,984,683 - CCNA_03980 0.70 -0.0 2,984,683 - CCNA_03980 0.70 -0.9 2,984,683 - CCNA_03980 0.70 -0.1 2,984,683 - CCNA_03980 0.70 -1.1 2,984,683 - CCNA_03980 0.70 -1.0 2,984,683 - CCNA_03980 0.70 +0.3 2,984,716 - -1.0 2,984,739 + -0.2 2,984,762 + -0.3 2,984,772 + +0.1 2,984,772 + -0.5 2,984,772 + +1.9 2,984,987 + CCNA_02830 0.12 -0.2 2,985,057 + CCNA_02830 0.53 +0.1 2,985,057 + CCNA_02830 0.53 +0.0 2,985,057 + CCNA_02830 0.53 -0.7 2,985,065 - CCNA_02830 0.57 -1.4 2,985,065 - CCNA_02830 0.57 -0.5 2,985,065 - CCNA_02830 0.57 +0.1 2,985,110 - CCNA_02830 0.84 -0.1 2,985,129 - -0.9 2,985,207 - +0.0 2,985,214 - -0.9 2,985,214 - -0.2 2,985,258 + -0.7 2,985,269 + -1.0 2,985,304 - CCNA_02831 0.16 +0.5 2,985,304 - CCNA_02831 0.16 -1.6 2,985,306 + CCNA_02831 0.16 +0.0 2,985,353 - CCNA_02831 0.25 +0.4 2,985,376 + CCNA_02831 0.29 -0.1 2,985,376 + CCNA_02831 0.29 -0.3 2,985,376 + CCNA_02831 0.29 +0.2 2,985,376 + CCNA_02831 0.29 -0.8 2,985,381 + CCNA_02831 0.30 +0.5 2,985,440 + CCNA_02831 0.40 -1.6 2,985,441 + CCNA_02831 0.40 +0.0 2,985,449 - CCNA_02831 0.42 -0.5 2,985,473 + CCNA_02831 0.46 -0.4 2,985,497 + CCNA_02831 0.50 +0.3 2,985,497 + CCNA_02831 0.50 +0.8 2,985,557 - CCNA_02831 0.61 -0.3 2,985,557 - CCNA_02831 0.61 +1.1 2,985,564 - CCNA_02831 0.62 +0.4 2,985,564 - CCNA_02831 0.62 +0.8 2,985,564 - CCNA_02831 0.62 -1.3 2,985,574 + CCNA_02831 0.64 -0.2 2,985,578 + CCNA_02831 0.65 +1.1 2,985,584 + CCNA_02831 0.66 -0.1 2,985,584 + CCNA_02831 0.66 -0.7 2,985,594 + CCNA_02831 0.68 +0.6 2,985,594 + CCNA_02831 0.68 -0.2 2,985,594 + CCNA_02831 0.68 -0.2 2,985,595 + CCNA_02831 0.68 +0.4 2,985,602 - CCNA_02831 0.69 +0.9 2,985,602 - CCNA_02831 0.69 +1.1 2,985,602 - CCNA_02831 0.69 +0.7 2,985,602 - CCNA_02831 0.69 -0.5 2,985,604 + CCNA_02831 0.70 -2.2 2,985,612 - CCNA_02831 0.71 -0.2 2,985,612 - CCNA_02831 0.71 +0.9 2,985,619 + CCNA_02831 0.72 +0.5 2,985,642 + CCNA_02831 0.76 -0.1 2,985,649 + CCNA_02831 0.78 +0.2 2,985,649 + CCNA_02831 0.78 -0.4 2,985,649 + CCNA_02831 0.78 +0.9 2,985,649 + CCNA_02831 0.78 +0.7 2,985,649 + CCNA_02831 0.78 -0.0 2,985,650 - CCNA_02831 0.78 +1.7 2,985,650 - CCNA_02831 0.78 -0.6 2,985,650 - CCNA_02831 0.78 -1.2 2,985,650 - CCNA_02831 0.78 -1.0 2,985,650 - CCNA_02831 0.78 -0.0 2,985,657 - CCNA_02831 0.79 +0.7 2,985,657 - CCNA_02831 0.79 -0.4 2,985,657 - CCNA_02831 0.79 -0.5 2,985,657 - CCNA_02831 0.79 -0.7 2,985,685 + CCNA_02831 0.84 -0.1 2,985,717 - CCNA_02831 0.90 +0.5 2,985,718 + +0.3 2,985,719 + +1.0 2,985,720 + +0.4 2,985,720 + +1.2
Or see this region's nucleotide sequence