Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02670 and CCNA_03972 overlap by 44 nucleotides CCNA_03972 and CCNA_02671 are separated by 65 nucleotides CCNA_02671 and CCNA_02672 are separated by 120 nucleotides
CCNA_02670: CCNA_02670 - ABC transporter ATP-binding protein, at 2,822,632 to 2,824,239
_02670
CCNA_03972: CCNA_03972 - hypothetical protein, at 2,824,196 to 2,824,309
_03972
CCNA_02671: CCNA_02671 - hypothetical protein, at 2,824,375 to 2,824,536
_02671
CCNA_02672: CCNA_02672 - hypothetical protein, at 2,824,657 to 2,825,121
_02672
Position (kb)
2824
2825 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2823.267 kb on + strand, within CCNA_02670 at 2823.267 kb on + strand, within CCNA_02670 at 2823.275 kb on - strand, within CCNA_02670 at 2823.309 kb on - strand, within CCNA_02670 at 2823.328 kb on + strand, within CCNA_02670 at 2823.328 kb on + strand, within CCNA_02670 at 2823.330 kb on + strand, within CCNA_02670 at 2823.371 kb on - strand, within CCNA_02670 at 2823.486 kb on + strand, within CCNA_02670 at 2823.490 kb on - strand, within CCNA_02670 at 2823.519 kb on + strand, within CCNA_02670 at 2823.525 kb on + strand, within CCNA_02670 at 2823.530 kb on + strand, within CCNA_02670 at 2823.555 kb on + strand, within CCNA_02670 at 2823.560 kb on + strand, within CCNA_02670 at 2823.572 kb on + strand, within CCNA_02670 at 2823.579 kb on + strand, within CCNA_02670 at 2823.580 kb on - strand, within CCNA_02670 at 2823.593 kb on + strand, within CCNA_02670 at 2823.641 kb on - strand, within CCNA_02670 at 2823.651 kb on - strand, within CCNA_02670 at 2823.675 kb on + strand, within CCNA_02670 at 2823.680 kb on - strand, within CCNA_02670 at 2823.689 kb on - strand, within CCNA_02670 at 2823.714 kb on - strand, within CCNA_02670 at 2823.736 kb on - strand, within CCNA_02670 at 2823.798 kb on - strand, within CCNA_02670 at 2823.871 kb on + strand, within CCNA_02670 at 2823.872 kb on + strand, within CCNA_02670 at 2823.891 kb on - strand, within CCNA_02670 at 2823.900 kb on + strand, within CCNA_02670 at 2823.933 kb on - strand, within CCNA_02670 at 2823.964 kb on + strand, within CCNA_02670 at 2823.972 kb on - strand, within CCNA_02670 at 2823.972 kb on - strand, within CCNA_02670 at 2823.980 kb on + strand, within CCNA_02670 at 2824.002 kb on - strand, within CCNA_02670 at 2824.002 kb on - strand, within CCNA_02670 at 2824.002 kb on - strand, within CCNA_02670 at 2824.017 kb on + strand, within CCNA_02670 at 2824.025 kb on - strand, within CCNA_02670 at 2824.025 kb on - strand, within CCNA_02670 at 2824.071 kb on + strand, within CCNA_02670 at 2824.073 kb on - strand, within CCNA_02670 at 2824.079 kb on - strand at 2824.086 kb on + strand at 2824.157 kb on - strand at 2824.176 kb on - strand at 2824.176 kb on - strand at 2824.292 kb on + strand, within CCNA_03972 at 2824.300 kb on - strand at 2824.300 kb on - strand at 2824.300 kb on - strand at 2824.368 kb on + strand at 2824.381 kb on - strand at 2824.391 kb on - strand at 2824.393 kb on + strand, within CCNA_02671 at 2824.393 kb on + strand, within CCNA_02671 at 2824.400 kb on + strand, within CCNA_02671 at 2824.401 kb on - strand, within CCNA_02671 at 2824.469 kb on - strand, within CCNA_02671 at 2824.470 kb on + strand, within CCNA_02671 at 2824.534 kb on - strand at 2824.560 kb on + strand at 2824.565 kb on + strand at 2824.594 kb on + strand at 2824.609 kb on + strand at 2824.620 kb on + strand at 2824.639 kb on + strand at 2824.647 kb on - strand at 2824.649 kb on - strand at 2824.654 kb on + strand at 2824.654 kb on + strand at 2824.662 kb on - strand at 2824.662 kb on - strand at 2824.690 kb on + strand at 2824.691 kb on + strand at 2824.738 kb on - strand, within CCNA_02672 at 2824.740 kb on - strand, within CCNA_02672 at 2824.741 kb on + strand, within CCNA_02672 at 2824.807 kb on + strand, within CCNA_02672 at 2824.883 kb on + strand, within CCNA_02672 at 2824.927 kb on - strand, within CCNA_02672 at 2824.927 kb on - strand, within CCNA_02672 at 2824.927 kb on - strand, within CCNA_02672 at 2824.927 kb on - strand, within CCNA_02672 at 2824.927 kb on - strand, within CCNA_02672 at 2824.927 kb on - strand, within CCNA_02672 at 2824.954 kb on - strand, within CCNA_02672 at 2824.991 kb on - strand, within CCNA_02672 at 2825.002 kb on - strand, within CCNA_02672 at 2825.006 kb on + strand, within CCNA_02672 at 2825.011 kb on + strand, within CCNA_02672 at 2825.011 kb on + strand, within CCNA_02672 at 2825.011 kb on + strand, within CCNA_02672 at 2825.011 kb on + strand, within CCNA_02672 at 2825.011 kb on + strand, within CCNA_02672 at 2825.019 kb on - strand, within CCNA_02672 at 2825.019 kb on - strand, within CCNA_02672 at 2825.019 kb on - strand, within CCNA_02672 at 2825.019 kb on - strand, within CCNA_02672 at 2825.022 kb on + strand, within CCNA_02672 at 2825.031 kb on - strand, within CCNA_02672 at 2825.045 kb on - strand, within CCNA_02672 at 2825.046 kb on - strand, within CCNA_02672 at 2825.046 kb on - strand, within CCNA_02672 at 2825.052 kb on + strand, within CCNA_02672 at 2825.116 kb on + strand at 2825.117 kb on - strand at 2825.166 kb on - strand at 2825.171 kb on + strand at 2825.196 kb on + strand at 2825.201 kb on + strand at 2825.204 kb on - strand at 2825.204 kb on - strand at 2825.211 kb on - strand at 2825.233 kb on - strand at 2825.283 kb on - strand at 2825.294 kb on - strand at 2825.298 kb on + strand at 2825.305 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 2,823,267 + CCNA_02670 0.39 -0.5 2,823,267 + CCNA_02670 0.39 -1.3 2,823,275 - CCNA_02670 0.40 -0.4 2,823,309 - CCNA_02670 0.42 -0.1 2,823,328 + CCNA_02670 0.43 -0.5 2,823,328 + CCNA_02670 0.43 -0.2 2,823,330 + CCNA_02670 0.43 -0.7 2,823,371 - CCNA_02670 0.46 +0.8 2,823,486 + CCNA_02670 0.53 -1.3 2,823,490 - CCNA_02670 0.53 -0.8 2,823,519 + CCNA_02670 0.55 -0.6 2,823,525 + CCNA_02670 0.56 -1.1 2,823,530 + CCNA_02670 0.56 -0.5 2,823,555 + CCNA_02670 0.57 -0.8 2,823,560 + CCNA_02670 0.58 +0.7 2,823,572 + CCNA_02670 0.58 -0.5 2,823,579 + CCNA_02670 0.59 -1.0 2,823,580 - CCNA_02670 0.59 +0.6 2,823,593 + CCNA_02670 0.60 -1.1 2,823,641 - CCNA_02670 0.63 +0.4 2,823,651 - CCNA_02670 0.63 +1.4 2,823,675 + CCNA_02670 0.65 -1.0 2,823,680 - CCNA_02670 0.65 +0.7 2,823,689 - CCNA_02670 0.66 +0.1 2,823,714 - CCNA_02670 0.67 -0.1 2,823,736 - CCNA_02670 0.69 +0.3 2,823,798 - CCNA_02670 0.73 +0.1 2,823,871 + CCNA_02670 0.77 -0.9 2,823,872 + CCNA_02670 0.77 -2.4 2,823,891 - CCNA_02670 0.78 +0.5 2,823,900 + CCNA_02670 0.79 -0.6 2,823,933 - CCNA_02670 0.81 -0.1 2,823,964 + CCNA_02670 0.83 -0.4 2,823,972 - CCNA_02670 0.83 +0.6 2,823,972 - CCNA_02670 0.83 +0.4 2,823,980 + CCNA_02670 0.84 +0.3 2,824,002 - CCNA_02670 0.85 +0.4 2,824,002 - CCNA_02670 0.85 -0.0 2,824,002 - CCNA_02670 0.85 -0.2 2,824,017 + CCNA_02670 0.86 +0.4 2,824,025 - CCNA_02670 0.87 +0.0 2,824,025 - CCNA_02670 0.87 +0.7 2,824,071 + CCNA_02670 0.89 -1.3 2,824,073 - CCNA_02670 0.90 +0.3 2,824,079 - -0.1 2,824,086 + +0.6 2,824,157 - +1.0 2,824,176 - +0.1 2,824,176 - +0.3 2,824,292 + CCNA_03972 0.84 +0.2 2,824,300 - +0.5 2,824,300 - -0.1 2,824,300 - +0.5 2,824,368 + +0.0 2,824,381 - +0.6 2,824,391 - +0.4 2,824,393 + CCNA_02671 0.11 +0.1 2,824,393 + CCNA_02671 0.11 -0.2 2,824,400 + CCNA_02671 0.15 +0.6 2,824,401 - CCNA_02671 0.16 +0.4 2,824,469 - CCNA_02671 0.58 -0.5 2,824,470 + CCNA_02671 0.59 -0.5 2,824,534 - +0.3 2,824,560 + -1.4 2,824,565 + -1.5 2,824,594 + -0.2 2,824,609 + -0.5 2,824,620 + -1.4 2,824,639 + -0.8 2,824,647 - +0.7 2,824,649 - +0.6 2,824,654 + -0.6 2,824,654 + -0.2 2,824,662 - +0.1 2,824,662 - +0.3 2,824,690 + -0.2 2,824,691 + +0.1 2,824,738 - CCNA_02672 0.17 +0.2 2,824,740 - CCNA_02672 0.18 +1.3 2,824,741 + CCNA_02672 0.18 -0.3 2,824,807 + CCNA_02672 0.32 -1.1 2,824,883 + CCNA_02672 0.49 -0.5 2,824,927 - CCNA_02672 0.58 -0.1 2,824,927 - CCNA_02672 0.58 +0.3 2,824,927 - CCNA_02672 0.58 +0.1 2,824,927 - CCNA_02672 0.58 +0.1 2,824,927 - CCNA_02672 0.58 +0.3 2,824,927 - CCNA_02672 0.58 +0.3 2,824,954 - CCNA_02672 0.64 +0.4 2,824,991 - CCNA_02672 0.72 -0.0 2,825,002 - CCNA_02672 0.74 +0.3 2,825,006 + CCNA_02672 0.75 -0.0 2,825,011 + CCNA_02672 0.76 -1.0 2,825,011 + CCNA_02672 0.76 -0.5 2,825,011 + CCNA_02672 0.76 -1.6 2,825,011 + CCNA_02672 0.76 +0.2 2,825,011 + CCNA_02672 0.76 -0.7 2,825,019 - CCNA_02672 0.78 +0.5 2,825,019 - CCNA_02672 0.78 +1.0 2,825,019 - CCNA_02672 0.78 +1.4 2,825,019 - CCNA_02672 0.78 -0.0 2,825,022 + CCNA_02672 0.78 -0.2 2,825,031 - CCNA_02672 0.80 -0.2 2,825,045 - CCNA_02672 0.83 -0.1 2,825,046 - CCNA_02672 0.84 -0.9 2,825,046 - CCNA_02672 0.84 +1.5 2,825,052 + CCNA_02672 0.85 -0.8 2,825,116 + -1.2 2,825,117 - -0.5 2,825,166 - -0.8 2,825,171 + +0.8 2,825,196 + -0.9 2,825,201 + +0.3 2,825,204 - -2.9 2,825,204 - -1.6 2,825,211 - -1.7 2,825,233 - -0.1 2,825,283 - +0.0 2,825,294 - +0.3 2,825,298 + -1.6 2,825,305 + -0.5
Or see this region's nucleotide sequence