Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03938

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00785 and CCNA_03938 are separated by 183 nucleotidesCCNA_03938 and CCNA_00787 are separated by 111 nucleotides CCNA_00785: CCNA_00785 - tRNA methyltransferase/FAD-dependent oxidoreductase MnmC, at 848,157 to 849,932 _00785 CCNA_03938: CCNA_03938 - hypothetical protein, at 850,116 to 850,442 _03938 CCNA_00787: CCNA_00787 - chemotaxis motA protein, at 850,554 to 851,420 _00787 Position (kb) 850 851Strain fitness (log2 ratio) -2 -1 0 1 2at 849.205 kb on + strand, within CCNA_00785at 849.336 kb on - strand, within CCNA_00785at 849.386 kb on + strand, within CCNA_00785at 849.417 kb on + strand, within CCNA_00785at 849.417 kb on + strand, within CCNA_00785at 849.417 kb on + strand, within CCNA_00785at 849.417 kb on + strand, within CCNA_00785at 849.425 kb on - strand, within CCNA_00785at 849.427 kb on + strand, within CCNA_00785at 849.427 kb on + strand, within CCNA_00785at 849.466 kb on + strand, within CCNA_00785at 849.507 kb on + strand, within CCNA_00785at 849.507 kb on + strand, within CCNA_00785at 849.507 kb on + strand, within CCNA_00785at 849.507 kb on + strand, within CCNA_00785at 849.507 kb on + strand, within CCNA_00785at 849.507 kb on + strand, within CCNA_00785at 849.515 kb on - strand, within CCNA_00785at 849.515 kb on - strand, within CCNA_00785at 849.515 kb on - strand, within CCNA_00785at 849.543 kb on + strand, within CCNA_00785at 849.602 kb on + strand, within CCNA_00785at 849.610 kb on - strand, within CCNA_00785at 849.610 kb on - strand, within CCNA_00785at 849.649 kb on + strand, within CCNA_00785at 849.677 kb on - strand, within CCNA_00785at 849.729 kb on + strand, within CCNA_00785at 849.737 kb on - strand, within CCNA_00785at 849.742 kb on + strand, within CCNA_00785at 849.761 kb on + strandat 849.761 kb on + strandat 849.761 kb on + strandat 849.776 kb on + strandat 849.794 kb on - strandat 849.858 kb on - strandat 849.867 kb on + strandat 849.870 kb on - strandat 849.884 kb on - strandat 849.887 kb on + strandat 849.888 kb on + strandat 849.895 kb on - strandat 849.916 kb on - strandat 849.943 kb on - strandat 849.947 kb on + strandat 849.948 kb on + strandat 849.956 kb on - strandat 849.956 kb on - strandat 849.958 kb on + strandat 849.981 kb on + strandat 850.021 kb on + strandat 850.037 kb on + strandat 850.037 kb on + strandat 850.037 kb on + strandat 850.037 kb on + strandat 850.037 kb on + strandat 850.045 kb on - strandat 850.047 kb on + strandat 850.051 kb on - strandat 850.054 kb on + strandat 850.054 kb on + strandat 850.088 kb on - strandat 850.088 kb on - strandat 850.126 kb on + strandat 850.126 kb on + strandat 850.134 kb on - strandat 850.134 kb on - strandat 850.134 kb on - strandat 850.134 kb on - strandat 850.139 kb on - strandat 850.149 kb on - strand, within CCNA_03938at 850.361 kb on + strand, within CCNA_03938at 850.408 kb on + strand, within CCNA_03938at 850.430 kb on + strandat 850.438 kb on - strandat 850.438 kb on - strandat 850.446 kb on - strandat 850.541 kb on - strandat 850.546 kb on + strandat 850.546 kb on + strandat 850.546 kb on + strandat 850.554 kb on - strandat 850.554 kb on - strandat 850.554 kb on - strandat 850.605 kb on - strandat 850.612 kb on + strandat 850.647 kb on + strand, within CCNA_00787at 850.677 kb on + strand, within CCNA_00787at 850.685 kb on - strand, within CCNA_00787at 850.691 kb on + strand, within CCNA_00787at 850.704 kb on - strand, within CCNA_00787at 850.732 kb on - strand, within CCNA_00787at 850.750 kb on + strand, within CCNA_00787at 850.755 kb on + strand, within CCNA_00787at 850.755 kb on + strand, within CCNA_00787at 850.763 kb on - strand, within CCNA_00787at 850.768 kb on - strand, within CCNA_00787at 850.768 kb on - strand, within CCNA_00787at 850.769 kb on - strand, within CCNA_00787at 850.773 kb on + strand, within CCNA_00787at 850.780 kb on + strand, within CCNA_00787at 850.788 kb on - strand, within CCNA_00787at 850.802 kb on - strand, within CCNA_00787at 850.824 kb on - strand, within CCNA_00787at 850.826 kb on - strand, within CCNA_00787at 850.887 kb on + strand, within CCNA_00787at 850.895 kb on - strand, within CCNA_00787at 850.895 kb on - strand, within CCNA_00787at 850.895 kb on - strand, within CCNA_00787at 850.924 kb on - strand, within CCNA_00787at 850.933 kb on + strand, within CCNA_00787at 850.936 kb on - strand, within CCNA_00787at 850.991 kb on + strand, within CCNA_00787at 850.999 kb on + strand, within CCNA_00787at 850.999 kb on - strand, within CCNA_00787at 851.014 kb on + strand, within CCNA_00787at 851.014 kb on - strand, within CCNA_00787at 851.019 kb on + strand, within CCNA_00787at 851.022 kb on + strand, within CCNA_00787at 851.045 kb on - strand, within CCNA_00787at 851.069 kb on + strand, within CCNA_00787at 851.069 kb on + strand, within CCNA_00787at 851.076 kb on - strand, within CCNA_00787at 851.077 kb on - strand, within CCNA_00787at 851.077 kb on - strand, within CCNA_00787at 851.077 kb on - strand, within CCNA_00787at 851.077 kb on - strand, within CCNA_00787at 851.145 kb on - strand, within CCNA_00787at 851.145 kb on - strand, within CCNA_00787at 851.146 kb on - strand, within CCNA_00787at 851.152 kb on + strand, within CCNA_00787at 851.191 kb on - strand, within CCNA_00787at 851.191 kb on - strand, within CCNA_00787at 851.193 kb on + strand, within CCNA_00787at 851.216 kb on - strand, within CCNA_00787at 851.237 kb on + strand, within CCNA_00787at 851.251 kb on - strand, within CCNA_00787at 851.256 kb on - strand, within CCNA_00787at 851.261 kb on - strand, within CCNA_00787at 851.264 kb on + strand, within CCNA_00787at 851.315 kb on - strand, within CCNA_00787at 851.329 kb on + strand, within CCNA_00787at 851.381 kb on - strandat 851.386 kb on + strandat 851.399 kb on - strandat 851.399 kb on - strandat 851.399 kb on - strandat 851.404 kb on - strandat 851.419 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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849,205 + CCNA_00785 0.59 +0.8
849,336 - CCNA_00785 0.66 +0.7
849,386 + CCNA_00785 0.69 +0.2
849,417 + CCNA_00785 0.71 -0.6
849,417 + CCNA_00785 0.71 -0.6
849,417 + CCNA_00785 0.71 +0.0
849,417 + CCNA_00785 0.71 -2.5
849,425 - CCNA_00785 0.71 -0.3
849,427 + CCNA_00785 0.72 +0.3
849,427 + CCNA_00785 0.72 +0.9
849,466 + CCNA_00785 0.74 -0.8
849,507 + CCNA_00785 0.76 -1.6
849,507 + CCNA_00785 0.76 -0.1
849,507 + CCNA_00785 0.76 +0.3
849,507 + CCNA_00785 0.76 +0.4
849,507 + CCNA_00785 0.76 +0.0
849,507 + CCNA_00785 0.76 -0.0
849,515 - CCNA_00785 0.76 -1.4
849,515 - CCNA_00785 0.76 -0.3
849,515 - CCNA_00785 0.76 +0.2
849,543 + CCNA_00785 0.78 -0.2
849,602 + CCNA_00785 0.81 -0.4
849,610 - CCNA_00785 0.82 +0.2
849,610 - CCNA_00785 0.82 +0.4
849,649 + CCNA_00785 0.84 -0.4
849,677 - CCNA_00785 0.86 +0.1
849,729 + CCNA_00785 0.89 -0.8
849,737 - CCNA_00785 0.89 +0.2
849,742 + CCNA_00785 0.89 -0.7
849,761 + +1.0
849,761 + -2.4
849,761 + +0.9
849,776 + -1.3
849,794 - +0.3
849,858 - -0.2
849,867 + -0.6
849,870 - +1.1
849,884 - +0.4
849,887 + +0.3
849,888 + -0.4
849,895 - +1.3
849,916 - +0.1
849,943 - +0.8
849,947 + -0.2
849,948 + -0.4
849,956 - +0.0
849,956 - +2.6
849,958 + -0.2
849,981 + +0.3
850,021 + -0.8
850,037 + +0.0
850,037 + +0.7
850,037 + +0.5
850,037 + -0.6
850,037 + +0.5
850,045 - -0.4
850,047 + +1.1
850,051 - -0.0
850,054 + +0.5
850,054 + +0.6
850,088 - -0.5
850,088 - +0.5
850,126 + +0.1
850,126 + -1.6
850,134 - +0.2
850,134 - -1.0
850,134 - +1.1
850,134 - +0.0
850,139 - -0.2
850,149 - CCNA_03938 0.10 +0.4
850,361 + CCNA_03938 0.75 +0.9
850,408 + CCNA_03938 0.89 +0.2
850,430 + -0.5
850,438 - +0.7
850,438 - -0.1
850,446 - +0.3
850,541 - +0.0
850,546 + -0.6
850,546 + -0.5
850,546 + +0.0
850,554 - +0.8
850,554 - +0.5
850,554 - +0.5
850,605 - -0.4
850,612 + -1.1
850,647 + CCNA_00787 0.11 -1.3
850,677 + CCNA_00787 0.14 +0.3
850,685 - CCNA_00787 0.15 -0.2
850,691 + CCNA_00787 0.16 -0.5
850,704 - CCNA_00787 0.17 +0.6
850,732 - CCNA_00787 0.21 +0.4
850,750 + CCNA_00787 0.23 -0.9
850,755 + CCNA_00787 0.23 -0.4
850,755 + CCNA_00787 0.23 -0.2
850,763 - CCNA_00787 0.24 -0.3
850,768 - CCNA_00787 0.25 -0.7
850,768 - CCNA_00787 0.25 +0.8
850,769 - CCNA_00787 0.25 +0.0
850,773 + CCNA_00787 0.25 +1.0
850,780 + CCNA_00787 0.26 -1.1
850,788 - CCNA_00787 0.27 -0.3
850,802 - CCNA_00787 0.29 +0.1
850,824 - CCNA_00787 0.31 -0.2
850,826 - CCNA_00787 0.31 -0.2
850,887 + CCNA_00787 0.38 +0.9
850,895 - CCNA_00787 0.39 +0.2
850,895 - CCNA_00787 0.39 +1.0
850,895 - CCNA_00787 0.39 +0.4
850,924 - CCNA_00787 0.43 +0.4
850,933 + CCNA_00787 0.44 +0.1
850,936 - CCNA_00787 0.44 -0.9
850,991 + CCNA_00787 0.50 -1.8
850,999 + CCNA_00787 0.51 -0.7
850,999 - CCNA_00787 0.51 +0.3
851,014 + CCNA_00787 0.53 -0.6
851,014 - CCNA_00787 0.53 +0.8
851,019 + CCNA_00787 0.54 -1.0
851,022 + CCNA_00787 0.54 +1.4
851,045 - CCNA_00787 0.57 +0.8
851,069 + CCNA_00787 0.59 -0.7
851,069 + CCNA_00787 0.59 -0.4
851,076 - CCNA_00787 0.60 +0.4
851,077 - CCNA_00787 0.60 +0.4
851,077 - CCNA_00787 0.60 +0.2
851,077 - CCNA_00787 0.60 +0.9
851,077 - CCNA_00787 0.60 -0.0
851,145 - CCNA_00787 0.68 +0.5
851,145 - CCNA_00787 0.68 +0.4
851,146 - CCNA_00787 0.68 +0.4
851,152 + CCNA_00787 0.69 +0.7
851,191 - CCNA_00787 0.73 -0.6
851,191 - CCNA_00787 0.73 +0.3
851,193 + CCNA_00787 0.74 -0.5
851,216 - CCNA_00787 0.76 +0.6
851,237 + CCNA_00787 0.79 -0.4
851,251 - CCNA_00787 0.80 +1.3
851,256 - CCNA_00787 0.81 +0.2
851,261 - CCNA_00787 0.82 +0.6
851,264 + CCNA_00787 0.82 -0.9
851,315 - CCNA_00787 0.88 +0.4
851,329 + CCNA_00787 0.89 -0.9
851,381 - +0.6
851,386 + -0.3
851,399 - -0.1
851,399 - +0.0
851,399 - +0.8
851,404 - -0.5
851,419 + -0.5

Or see this region's nucleotide sequence