Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03888

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00700 and CCNA_00701 are separated by 586 nucleotidesCCNA_00701 and CCNA_03888 are separated by 144 nucleotidesCCNA_03888 and CCNA_00703 are separated by 102 nucleotidesCCNA_00703 and CCNA_00704 are separated by 42 nucleotidesCCNA_00704 and CCNA_00705 are separated by 151 nucleotides CCNA_00700: CCNA_00700 - TonB-dependent receptor, at 759,099 to 761,024 _00700 CCNA_00701: CCNA_00701 - cold shock protein CspB, at 761,611 to 761,820 _00701 CCNA_03888: CCNA_03888 - hypothetical protein, at 761,965 to 762,324 _03888 CCNA_00703: CCNA_00703 - hypothetical protein, at 762,427 to 762,633 _00703 CCNA_00704: CCNA_00704 - hypothetical protein, at 762,676 to 762,873 _00704 CCNA_00705: CCNA_00705 - hypothetical protein, at 763,025 to 763,315 _00705 Position (kb) 761 762 763Strain fitness (log2 ratio) -2 -1 0 1 2at 761.028 kb on - strandat 761.033 kb on - strandat 761.042 kb on + strandat 761.043 kb on + strandat 761.050 kb on - strandat 761.050 kb on - strandat 761.068 kb on + strandat 761.076 kb on - strandat 761.076 kb on - strandat 761.076 kb on - strandat 761.076 kb on - strandat 761.076 kb on - strandat 761.081 kb on + strandat 761.143 kb on - strandat 761.146 kb on + strandat 761.159 kb on - strandat 761.188 kb on + strandat 761.231 kb on + strandat 761.231 kb on - strandat 761.231 kb on - strandat 761.253 kb on - strandat 761.267 kb on + strandat 761.536 kb on + strandat 761.572 kb on + strandat 761.572 kb on + strandat 761.580 kb on - strandat 761.580 kb on - strandat 761.624 kb on + strandat 761.652 kb on - strand, within CCNA_00701at 761.662 kb on + strand, within CCNA_00701at 761.717 kb on + strand, within CCNA_00701at 761.718 kb on - strand, within CCNA_00701at 761.722 kb on + strand, within CCNA_00701at 761.722 kb on + strand, within CCNA_00701at 761.751 kb on - strand, within CCNA_00701at 761.805 kb on + strandat 761.839 kb on - strandat 761.844 kb on - strandat 761.934 kb on - strandat 761.958 kb on - strandat 761.967 kb on - strandat 761.967 kb on - strandat 761.968 kb on + strandat 762.035 kb on + strand, within CCNA_03888at 762.084 kb on + strand, within CCNA_03888at 762.084 kb on + strand, within CCNA_03888at 762.092 kb on - strand, within CCNA_03888at 762.092 kb on - strand, within CCNA_03888at 762.092 kb on - strand, within CCNA_03888at 762.092 kb on - strand, within CCNA_03888at 762.092 kb on - strand, within CCNA_03888at 762.092 kb on - strand, within CCNA_03888at 762.116 kb on - strand, within CCNA_03888at 762.157 kb on - strand, within CCNA_03888at 762.162 kb on - strand, within CCNA_03888at 762.162 kb on - strand, within CCNA_03888at 762.171 kb on + strand, within CCNA_03888at 762.256 kb on + strand, within CCNA_03888at 762.279 kb on + strand, within CCNA_03888at 762.281 kb on - strand, within CCNA_03888at 762.341 kb on + strandat 762.348 kb on + strandat 762.349 kb on - strandat 762.349 kb on - strandat 762.357 kb on + strandat 762.357 kb on + strandat 762.422 kb on - strandat 762.424 kb on + strandat 762.427 kb on - strandat 762.432 kb on - strandat 762.454 kb on + strand, within CCNA_00703at 762.467 kb on + strand, within CCNA_00703at 762.475 kb on - strand, within CCNA_00703at 762.488 kb on - strand, within CCNA_00703at 762.538 kb on + strand, within CCNA_00703at 762.543 kb on + strand, within CCNA_00703at 762.560 kb on + strand, within CCNA_00703at 762.560 kb on + strand, within CCNA_00703at 762.570 kb on + strand, within CCNA_00703at 762.572 kb on + strand, within CCNA_00703at 762.577 kb on + strand, within CCNA_00703at 762.577 kb on + strand, within CCNA_00703at 762.577 kb on + strand, within CCNA_00703at 762.577 kb on + strand, within CCNA_00703at 762.582 kb on + strand, within CCNA_00703at 762.583 kb on + strand, within CCNA_00703at 762.585 kb on - strand, within CCNA_00703at 762.585 kb on - strand, within CCNA_00703at 762.590 kb on - strand, within CCNA_00703at 762.590 kb on - strand, within CCNA_00703at 762.650 kb on + strandat 762.696 kb on + strand, within CCNA_00704at 762.708 kb on + strand, within CCNA_00704at 762.718 kb on - strand, within CCNA_00704at 762.745 kb on + strand, within CCNA_00704at 762.785 kb on - strand, within CCNA_00704at 762.800 kb on - strand, within CCNA_00704at 762.819 kb on - strand, within CCNA_00704at 762.821 kb on + strand, within CCNA_00704at 762.836 kb on - strand, within CCNA_00704at 762.856 kb on + strandat 762.894 kb on + strandat 762.894 kb on + strandat 762.894 kb on + strandat 762.906 kb on + strandat 762.914 kb on - strandat 762.914 kb on - strandat 762.916 kb on + strandat 762.916 kb on + strandat 762.916 kb on + strandat 762.924 kb on - strandat 762.951 kb on + strandat 762.951 kb on + strandat 762.959 kb on - strandat 763.018 kb on - strandat 763.055 kb on + strand, within CCNA_00705at 763.063 kb on - strand, within CCNA_00705at 763.064 kb on + strand, within CCNA_00705at 763.087 kb on - strand, within CCNA_00705at 763.170 kb on - strand, within CCNA_00705at 763.190 kb on + strand, within CCNA_00705at 763.245 kb on + strand, within CCNA_00705at 763.281 kb on - strand, within CCNA_00705at 763.281 kb on - strand, within CCNA_00705

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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761,028 - +0.5
761,033 - -0.1
761,042 + -0.7
761,043 + -1.0
761,050 - +2.7
761,050 - -0.1
761,068 + +0.8
761,076 - -0.1
761,076 - +1.3
761,076 - +0.3
761,076 - +0.2
761,076 - -0.4
761,081 + +0.0
761,143 - -0.2
761,146 + +0.1
761,159 - +0.4
761,188 + +0.9
761,231 + +0.2
761,231 - +0.2
761,231 - -0.2
761,253 - +0.0
761,267 + +0.4
761,536 + +1.5
761,572 + +0.7
761,572 + -0.1
761,580 - +0.7
761,580 - +0.5
761,624 + +1.1
761,652 - CCNA_00701 0.20 +1.0
761,662 + CCNA_00701 0.24 +0.0
761,717 + CCNA_00701 0.50 +0.4
761,718 - CCNA_00701 0.51 -0.7
761,722 + CCNA_00701 0.53 +0.1
761,722 + CCNA_00701 0.53 -0.1
761,751 - CCNA_00701 0.67 +0.8
761,805 + -0.3
761,839 - -2.5
761,844 - -0.4
761,934 - -0.8
761,958 - +0.1
761,967 - -1.6
761,967 - +0.6
761,968 + -0.4
762,035 + CCNA_03888 0.19 -0.0
762,084 + CCNA_03888 0.33 +0.8
762,084 + CCNA_03888 0.33 +0.2
762,092 - CCNA_03888 0.35 +0.2
762,092 - CCNA_03888 0.35 +0.7
762,092 - CCNA_03888 0.35 +0.0
762,092 - CCNA_03888 0.35 +0.6
762,092 - CCNA_03888 0.35 +0.1
762,092 - CCNA_03888 0.35 -0.2
762,116 - CCNA_03888 0.42 -0.1
762,157 - CCNA_03888 0.53 +0.1
762,162 - CCNA_03888 0.55 +0.4
762,162 - CCNA_03888 0.55 -0.0
762,171 + CCNA_03888 0.57 +0.3
762,256 + CCNA_03888 0.81 -0.5
762,279 + CCNA_03888 0.87 -0.2
762,281 - CCNA_03888 0.88 +0.1
762,341 + +0.2
762,348 + +0.7
762,349 - -0.3
762,349 - -0.3
762,357 + +0.7
762,357 + +0.1
762,422 - +0.3
762,424 + +0.8
762,427 - +0.7
762,432 - -0.5
762,454 + CCNA_00703 0.13 +0.7
762,467 + CCNA_00703 0.19 -0.3
762,475 - CCNA_00703 0.23 -0.1
762,488 - CCNA_00703 0.29 +0.0
762,538 + CCNA_00703 0.54 -0.2
762,543 + CCNA_00703 0.56 +0.3
762,560 + CCNA_00703 0.64 +0.3
762,560 + CCNA_00703 0.64 -0.2
762,570 + CCNA_00703 0.69 +0.7
762,572 + CCNA_00703 0.70 +0.5
762,577 + CCNA_00703 0.72 +0.3
762,577 + CCNA_00703 0.72 +0.1
762,577 + CCNA_00703 0.72 -0.6
762,577 + CCNA_00703 0.72 +0.1
762,582 + CCNA_00703 0.75 +1.1
762,583 + CCNA_00703 0.75 +0.2
762,585 - CCNA_00703 0.76 -0.9
762,585 - CCNA_00703 0.76 -0.7
762,590 - CCNA_00703 0.79 -0.2
762,590 - CCNA_00703 0.79 +0.5
762,650 + +0.3
762,696 + CCNA_00704 0.10 -0.2
762,708 + CCNA_00704 0.16 +0.8
762,718 - CCNA_00704 0.21 +0.0
762,745 + CCNA_00704 0.35 -1.0
762,785 - CCNA_00704 0.55 -1.3
762,800 - CCNA_00704 0.63 -0.2
762,819 - CCNA_00704 0.72 -0.3
762,821 + CCNA_00704 0.73 +0.3
762,836 - CCNA_00704 0.81 -1.6
762,856 + +1.2
762,894 + +0.2
762,894 + +0.3
762,894 + +0.5
762,906 + +0.8
762,914 - -1.3
762,914 - +0.0
762,916 + +0.8
762,916 + +0.4
762,916 + +0.3
762,924 - -2.0
762,951 + +0.3
762,951 + +0.3
762,959 - -0.0
763,018 - +0.6
763,055 + CCNA_00705 0.10 -0.5
763,063 - CCNA_00705 0.13 +0.2
763,064 + CCNA_00705 0.13 +0.7
763,087 - CCNA_00705 0.21 +0.5
763,170 - CCNA_00705 0.50 +1.1
763,190 + CCNA_00705 0.57 -0.1
763,245 + CCNA_00705 0.76 +0.4
763,281 - CCNA_00705 0.88 +0.2
763,281 - CCNA_00705 0.88 +1.7

Or see this region's nucleotide sequence