Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03869 and CCNA_03870 overlap by 11 nucleotides CCNA_03870 and CCNA_03871 overlap by 11 nucleotides CCNA_03871 and CCNA_03872 are separated by 170 nucleotides
CCNA_03869: CCNA_03869 - chromosome partitioning protein ParA, at 4,031,502 to 4,032,305
_03869
CCNA_03870: CCNA_03870 - methyltransferase GidB, at 4,032,295 to 4,032,945
_03870
CCNA_03871: CCNA_03871 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 4,032,935 to 4,034,791
_03871
CCNA_03872: CCNA_03872 - tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase, at 4,034,962 to 4,036,332
_03872
Position (kb)
4032
4033
4034
4035 Strain fitness (log2 ratio)
-2
-1
0
1 at 4032.292 kb on + strand at 4032.346 kb on + strand at 4032.368 kb on + strand, within CCNA_03870 at 4032.423 kb on - strand, within CCNA_03870 at 4032.425 kb on + strand, within CCNA_03870 at 4032.494 kb on + strand, within CCNA_03870 at 4032.522 kb on - strand, within CCNA_03870 at 4032.569 kb on - strand, within CCNA_03870 at 4032.602 kb on - strand, within CCNA_03870 at 4032.644 kb on - strand, within CCNA_03870 at 4032.655 kb on - strand, within CCNA_03870 at 4032.655 kb on - strand, within CCNA_03870 at 4032.655 kb on - strand, within CCNA_03870 at 4032.685 kb on - strand, within CCNA_03870 at 4032.695 kb on - strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.754 kb on + strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.762 kb on - strand, within CCNA_03870 at 4032.770 kb on + strand, within CCNA_03870 at 4032.826 kb on + strand, within CCNA_03870 at 4032.836 kb on + strand, within CCNA_03870 at 4032.881 kb on + strand at 4032.940 kb on - strand at 4033.004 kb on - strand at 4033.644 kb on + strand, within CCNA_03871 at 4033.794 kb on + strand, within CCNA_03871 at 4033.802 kb on - strand, within CCNA_03871 at 4034.592 kb on - strand, within CCNA_03871 at 4034.808 kb on - strand at 4035.068 kb on - strand at 4035.113 kb on + strand, within CCNA_03872 at 4035.172 kb on - strand, within CCNA_03872 at 4035.223 kb on - strand, within CCNA_03872 at 4035.264 kb on - strand, within CCNA_03872 at 4035.272 kb on - strand, within CCNA_03872 at 4035.342 kb on - strand, within CCNA_03872 at 4035.418 kb on - strand, within CCNA_03872 at 4035.437 kb on + strand, within CCNA_03872 at 4035.461 kb on + strand, within CCNA_03872 at 4035.467 kb on + strand, within CCNA_03872 at 4035.493 kb on - strand, within CCNA_03872 at 4035.494 kb on + strand, within CCNA_03872 at 4035.512 kb on + strand, within CCNA_03872 at 4035.527 kb on - strand, within CCNA_03872 at 4035.542 kb on - strand, within CCNA_03872 at 4035.606 kb on - strand, within CCNA_03872 at 4035.735 kb on - strand, within CCNA_03872 at 4035.738 kb on + strand, within CCNA_03872 at 4035.738 kb on + strand, within CCNA_03872 at 4035.738 kb on + strand, within CCNA_03872 at 4035.756 kb on + strand, within CCNA_03872 at 4035.780 kb on + strand, within CCNA_03872
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 4,032,292 + -0.2 4,032,346 + +0.4 4,032,368 + CCNA_03870 0.11 +0.2 4,032,423 - CCNA_03870 0.20 +0.3 4,032,425 + CCNA_03870 0.20 +0.4 4,032,494 + CCNA_03870 0.31 +1.5 4,032,522 - CCNA_03870 0.35 +0.4 4,032,569 - CCNA_03870 0.42 +0.2 4,032,602 - CCNA_03870 0.47 +0.3 4,032,644 - CCNA_03870 0.54 -0.4 4,032,655 - CCNA_03870 0.55 +0.5 4,032,655 - CCNA_03870 0.55 +0.5 4,032,655 - CCNA_03870 0.55 +0.2 4,032,685 - CCNA_03870 0.60 -0.5 4,032,695 - CCNA_03870 0.61 -0.2 4,032,754 + CCNA_03870 0.71 -0.4 4,032,754 + CCNA_03870 0.71 +0.2 4,032,754 + CCNA_03870 0.71 +0.7 4,032,754 + CCNA_03870 0.71 +0.8 4,032,754 + CCNA_03870 0.71 +0.8 4,032,754 + CCNA_03870 0.71 -0.1 4,032,754 + CCNA_03870 0.71 -0.0 4,032,754 + CCNA_03870 0.71 -1.3 4,032,762 - CCNA_03870 0.72 +0.9 4,032,762 - CCNA_03870 0.72 -0.1 4,032,762 - CCNA_03870 0.72 +0.2 4,032,762 - CCNA_03870 0.72 -0.1 4,032,762 - CCNA_03870 0.72 -0.1 4,032,762 - CCNA_03870 0.72 +0.7 4,032,770 + CCNA_03870 0.73 +0.1 4,032,826 + CCNA_03870 0.82 -0.4 4,032,836 + CCNA_03870 0.83 +0.2 4,032,881 + -0.0 4,032,940 - +0.4 4,033,004 - +0.4 4,033,644 + CCNA_03871 0.38 -0.1 4,033,794 + CCNA_03871 0.46 -1.7 4,033,802 - CCNA_03871 0.47 -0.8 4,034,592 - CCNA_03871 0.89 -0.3 4,034,808 - -0.1 4,035,068 - -0.2 4,035,113 + CCNA_03872 0.11 +0.4 4,035,172 - CCNA_03872 0.15 +0.2 4,035,223 - CCNA_03872 0.19 -1.4 4,035,264 - CCNA_03872 0.22 -0.6 4,035,272 - CCNA_03872 0.23 -2.0 4,035,342 - CCNA_03872 0.28 +0.7 4,035,418 - CCNA_03872 0.33 +0.4 4,035,437 + CCNA_03872 0.35 -2.7 4,035,461 + CCNA_03872 0.36 -0.7 4,035,467 + CCNA_03872 0.37 -1.2 4,035,493 - CCNA_03872 0.39 -1.1 4,035,494 + CCNA_03872 0.39 +0.8 4,035,512 + CCNA_03872 0.40 -0.4 4,035,527 - CCNA_03872 0.41 +1.0 4,035,542 - CCNA_03872 0.42 +0.4 4,035,606 - CCNA_03872 0.47 +0.2 4,035,735 - CCNA_03872 0.56 +0.0 4,035,738 + CCNA_03872 0.57 -0.3 4,035,738 + CCNA_03872 0.57 -2.1 4,035,738 + CCNA_03872 0.57 +0.5 4,035,756 + CCNA_03872 0.58 -1.2 4,035,780 + CCNA_03872 0.60 -1.3
Or see this region's nucleotide sequence