Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03760 and CCNA_03761 overlap by 4 nucleotides CCNA_03761 and CCNA_03762 are separated by 215 nucleotides CCNA_03762 and CCNA_03763 are separated by 81 nucleotides CCNA_03763 and CCNA_03764 are separated by 81 nucleotides CCNA_03764 and CCNA_03765 are separated by 3 nucleotides
CCNA_03760: CCNA_03760 - PaaI-family thioesterase, at 3,930,450 to 3,930,950
_03760
CCNA_03761: CCNA_03761 - PaaI-family thioesterase, at 3,930,947 to 3,931,366
_03761
CCNA_03762: CCNA_03762 - acetolactate synthase-related protein, at 3,931,582 to 3,931,680
_03762
CCNA_03763: CCNA_03763 - deacetylase, at 3,931,762 to 3,932,676
_03763
CCNA_03764: CCNA_03764 - acyl-CoA thioesterase, at 3,932,758 to 3,933,612
_03764
CCNA_03765: CCNA_03765 - phosphohydrolase, MutT/nudix family protein, at 3,933,616 to 3,934,179
_03765
Position (kb)
3931
3932
3933 Strain fitness (log2 ratio)
-2
-1
0
1 at 3930.769 kb on + strand, within CCNA_03760 at 3930.782 kb on - strand, within CCNA_03760 at 3930.810 kb on + strand, within CCNA_03760 at 3930.818 kb on - strand, within CCNA_03760 at 3930.846 kb on + strand, within CCNA_03760 at 3930.864 kb on + strand, within CCNA_03760 at 3930.944 kb on + strand at 3930.977 kb on + strand at 3930.982 kb on + strand at 3931.012 kb on + strand, within CCNA_03761 at 3931.040 kb on - strand, within CCNA_03761 at 3931.049 kb on + strand, within CCNA_03761 at 3931.119 kb on + strand, within CCNA_03761 at 3931.127 kb on - strand, within CCNA_03761 at 3931.136 kb on + strand, within CCNA_03761 at 3931.139 kb on - strand, within CCNA_03761 at 3931.187 kb on + strand, within CCNA_03761 at 3931.195 kb on - strand, within CCNA_03761 at 3931.207 kb on + strand, within CCNA_03761 at 3931.232 kb on + strand, within CCNA_03761 at 3931.240 kb on - strand, within CCNA_03761 at 3931.240 kb on - strand, within CCNA_03761 at 3931.264 kb on - strand, within CCNA_03761 at 3931.285 kb on + strand, within CCNA_03761 at 3931.347 kb on - strand at 3931.347 kb on - strand at 3931.347 kb on - strand at 3931.361 kb on + strand at 3931.361 kb on + strand at 3931.361 kb on + strand at 3931.369 kb on - strand at 3931.369 kb on - strand at 3931.377 kb on - strand at 3931.432 kb on + strand at 3931.472 kb on + strand at 3931.480 kb on - strand at 3931.520 kb on - strand at 3931.532 kb on - strand at 3931.535 kb on - strand at 3931.572 kb on + strand at 3931.593 kb on + strand, within CCNA_03762 at 3931.593 kb on + strand, within CCNA_03762 at 3931.650 kb on - strand, within CCNA_03762 at 3931.673 kb on - strand at 3931.675 kb on - strand at 3931.681 kb on - strand at 3931.696 kb on - strand at 3931.711 kb on + strand at 3931.719 kb on - strand at 3931.729 kb on - strand at 3931.812 kb on + strand at 3931.903 kb on - strand, within CCNA_03763 at 3931.918 kb on + strand, within CCNA_03763 at 3931.921 kb on - strand, within CCNA_03763 at 3931.932 kb on + strand, within CCNA_03763 at 3931.989 kb on - strand, within CCNA_03763 at 3932.058 kb on + strand, within CCNA_03763 at 3932.066 kb on - strand, within CCNA_03763 at 3932.107 kb on - strand, within CCNA_03763 at 3932.117 kb on - strand, within CCNA_03763 at 3932.140 kb on + strand, within CCNA_03763 at 3932.140 kb on + strand, within CCNA_03763 at 3932.148 kb on - strand, within CCNA_03763 at 3932.167 kb on + strand, within CCNA_03763 at 3932.167 kb on + strand, within CCNA_03763 at 3932.179 kb on + strand, within CCNA_03763 at 3932.185 kb on + strand, within CCNA_03763 at 3932.430 kb on - strand, within CCNA_03763 at 3932.466 kb on + strand, within CCNA_03763 at 3932.504 kb on - strand, within CCNA_03763 at 3932.525 kb on + strand, within CCNA_03763 at 3932.543 kb on - strand, within CCNA_03763 at 3932.552 kb on - strand, within CCNA_03763 at 3932.567 kb on + strand, within CCNA_03763 at 3932.567 kb on + strand, within CCNA_03763 at 3932.567 kb on + strand, within CCNA_03763 at 3932.575 kb on - strand, within CCNA_03763 at 3932.575 kb on - strand, within CCNA_03763 at 3932.683 kb on + strand at 3932.694 kb on - strand at 3932.720 kb on - strand at 3932.758 kb on + strand at 3932.767 kb on + strand at 3932.768 kb on - strand at 3932.775 kb on - strand at 3932.775 kb on - strand at 3932.785 kb on + strand at 3932.817 kb on + strand at 3932.924 kb on - strand, within CCNA_03764 at 3932.965 kb on + strand, within CCNA_03764 at 3932.967 kb on - strand, within CCNA_03764 at 3932.981 kb on - strand, within CCNA_03764 at 3933.009 kb on + strand, within CCNA_03764 at 3933.037 kb on - strand, within CCNA_03764 at 3933.150 kb on + strand, within CCNA_03764 at 3933.257 kb on - strand, within CCNA_03764 at 3933.281 kb on - strand, within CCNA_03764 at 3933.288 kb on + strand, within CCNA_03764 at 3933.289 kb on + strand, within CCNA_03764 at 3933.297 kb on - strand, within CCNA_03764 at 3933.310 kb on + strand, within CCNA_03764 at 3933.343 kb on + strand, within CCNA_03764 at 3933.348 kb on + strand, within CCNA_03764 at 3933.351 kb on - strand, within CCNA_03764 at 3933.410 kb on - strand, within CCNA_03764 at 3933.410 kb on - strand, within CCNA_03764 at 3933.415 kb on - strand, within CCNA_03764 at 3933.433 kb on + strand, within CCNA_03764 at 3933.434 kb on + strand, within CCNA_03764 at 3933.446 kb on - strand, within CCNA_03764 at 3933.446 kb on - strand, within CCNA_03764 at 3933.493 kb on + strand, within CCNA_03764 at 3933.501 kb on - strand, within CCNA_03764 at 3933.501 kb on - strand, within CCNA_03764 at 3933.501 kb on - strand, within CCNA_03764 at 3933.501 kb on - strand, within CCNA_03764 at 3933.509 kb on + strand, within CCNA_03764 at 3933.564 kb on + strand at 3933.621 kb on - strand at 3933.621 kb on - strand at 3933.622 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 3,930,769 + CCNA_03760 0.64 -1.4 3,930,782 - CCNA_03760 0.66 +1.6 3,930,810 + CCNA_03760 0.72 +0.1 3,930,818 - CCNA_03760 0.73 -2.3 3,930,846 + CCNA_03760 0.79 +0.6 3,930,864 + CCNA_03760 0.83 +0.6 3,930,944 + -0.0 3,930,977 + +0.2 3,930,982 + -0.5 3,931,012 + CCNA_03761 0.15 -0.2 3,931,040 - CCNA_03761 0.22 +0.6 3,931,049 + CCNA_03761 0.24 +0.4 3,931,119 + CCNA_03761 0.41 +0.1 3,931,127 - CCNA_03761 0.43 -0.0 3,931,136 + CCNA_03761 0.45 +0.5 3,931,139 - CCNA_03761 0.46 -0.1 3,931,187 + CCNA_03761 0.57 +0.9 3,931,195 - CCNA_03761 0.59 -0.2 3,931,207 + CCNA_03761 0.62 +1.2 3,931,232 + CCNA_03761 0.68 +0.0 3,931,240 - CCNA_03761 0.70 +0.0 3,931,240 - CCNA_03761 0.70 -1.7 3,931,264 - CCNA_03761 0.75 +0.1 3,931,285 + CCNA_03761 0.80 -0.1 3,931,347 - +0.0 3,931,347 - +0.5 3,931,347 - -0.1 3,931,361 + +0.3 3,931,361 + -0.0 3,931,361 + +0.3 3,931,369 - +0.4 3,931,369 - -0.3 3,931,377 - -1.1 3,931,432 + -0.1 3,931,472 + +0.3 3,931,480 - +0.1 3,931,520 - +0.1 3,931,532 - +0.3 3,931,535 - -1.2 3,931,572 + +0.1 3,931,593 + CCNA_03762 0.11 +0.5 3,931,593 + CCNA_03762 0.11 +0.3 3,931,650 - CCNA_03762 0.69 +0.1 3,931,673 - -0.8 3,931,675 - +0.2 3,931,681 - +1.7 3,931,696 - -0.6 3,931,711 + -0.5 3,931,719 - -2.0 3,931,729 - -0.3 3,931,812 + +0.1 3,931,903 - CCNA_03763 0.15 -0.3 3,931,918 + CCNA_03763 0.17 -0.5 3,931,921 - CCNA_03763 0.17 +0.0 3,931,932 + CCNA_03763 0.19 +0.3 3,931,989 - CCNA_03763 0.25 +0.7 3,932,058 + CCNA_03763 0.32 -0.3 3,932,066 - CCNA_03763 0.33 -0.7 3,932,107 - CCNA_03763 0.38 +0.2 3,932,117 - CCNA_03763 0.39 -0.9 3,932,140 + CCNA_03763 0.41 -0.1 3,932,140 + CCNA_03763 0.41 -0.3 3,932,148 - CCNA_03763 0.42 +0.1 3,932,167 + CCNA_03763 0.44 +1.4 3,932,167 + CCNA_03763 0.44 -0.7 3,932,179 + CCNA_03763 0.46 +0.5 3,932,185 + CCNA_03763 0.46 +0.5 3,932,430 - CCNA_03763 0.73 +0.2 3,932,466 + CCNA_03763 0.77 +0.1 3,932,504 - CCNA_03763 0.81 +0.1 3,932,525 + CCNA_03763 0.83 +0.3 3,932,543 - CCNA_03763 0.85 -0.0 3,932,552 - CCNA_03763 0.86 +0.0 3,932,567 + CCNA_03763 0.88 -0.3 3,932,567 + CCNA_03763 0.88 +0.6 3,932,567 + CCNA_03763 0.88 +0.7 3,932,575 - CCNA_03763 0.89 -0.2 3,932,575 - CCNA_03763 0.89 +0.6 3,932,683 + +1.1 3,932,694 - +0.2 3,932,720 - +0.9 3,932,758 + +0.8 3,932,767 + -0.5 3,932,768 - -1.0 3,932,775 - -0.2 3,932,775 - -0.2 3,932,785 + +0.5 3,932,817 + -0.2 3,932,924 - CCNA_03764 0.19 -0.4 3,932,965 + CCNA_03764 0.24 -0.1 3,932,967 - CCNA_03764 0.24 +0.5 3,932,981 - CCNA_03764 0.26 -0.2 3,933,009 + CCNA_03764 0.29 +0.3 3,933,037 - CCNA_03764 0.33 +0.8 3,933,150 + CCNA_03764 0.46 -0.1 3,933,257 - CCNA_03764 0.58 +0.2 3,933,281 - CCNA_03764 0.61 -0.1 3,933,288 + CCNA_03764 0.62 +0.1 3,933,289 + CCNA_03764 0.62 -0.5 3,933,297 - CCNA_03764 0.63 -0.1 3,933,310 + CCNA_03764 0.65 +0.4 3,933,343 + CCNA_03764 0.68 +0.1 3,933,348 + CCNA_03764 0.69 +0.8 3,933,351 - CCNA_03764 0.69 +0.9 3,933,410 - CCNA_03764 0.76 +0.6 3,933,410 - CCNA_03764 0.76 -0.8 3,933,415 - CCNA_03764 0.77 +0.4 3,933,433 + CCNA_03764 0.79 +0.1 3,933,434 + CCNA_03764 0.79 -0.1 3,933,446 - CCNA_03764 0.80 +0.8 3,933,446 - CCNA_03764 0.80 +1.0 3,933,493 + CCNA_03764 0.86 +0.4 3,933,501 - CCNA_03764 0.87 -0.7 3,933,501 - CCNA_03764 0.87 -0.4 3,933,501 - CCNA_03764 0.87 -0.4 3,933,501 - CCNA_03764 0.87 -0.3 3,933,509 + CCNA_03764 0.88 -0.4 3,933,564 + +0.1 3,933,621 - +0.3 3,933,621 - -0.2 3,933,622 - +0.4
Or see this region's nucleotide sequence