Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03733

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03732 and CCNA_03733 overlap by 17 nucleotidesCCNA_03733 and CCNA_03734 are separated by 94 nucleotides CCNA_03732: CCNA_03732 - N-acyl-D-glucosamine 2-epimerase, at 3,899,392 to 3,900,552 _03732 CCNA_03733: CCNA_03733 - mannose-1-phosphate guanylyltransferase, at 3,900,536 to 3,901,846 _03733 CCNA_03734: CCNA_03734 - glutamine-dependent NAD synthetase, at 3,901,941 to 3,903,977 _03734 Position (kb) 3900 3901 3902Strain fitness (log2 ratio) -3 -2 -1 0 1at 3899.577 kb on + strand, within CCNA_03732at 3899.586 kb on - strand, within CCNA_03732at 3899.620 kb on - strand, within CCNA_03732at 3899.649 kb on + strand, within CCNA_03732at 3899.650 kb on + strand, within CCNA_03732at 3899.720 kb on + strand, within CCNA_03732at 3899.818 kb on + strand, within CCNA_03732at 3899.825 kb on + strand, within CCNA_03732at 3899.825 kb on + strand, within CCNA_03732at 3899.833 kb on - strand, within CCNA_03732at 3899.916 kb on - strand, within CCNA_03732at 3900.026 kb on - strand, within CCNA_03732at 3900.051 kb on - strand, within CCNA_03732at 3900.149 kb on + strand, within CCNA_03732at 3900.211 kb on + strand, within CCNA_03732at 3900.224 kb on + strand, within CCNA_03732at 3900.224 kb on + strand, within CCNA_03732at 3900.318 kb on + strand, within CCNA_03732at 3900.326 kb on - strand, within CCNA_03732at 3900.365 kb on + strand, within CCNA_03732at 3900.567 kb on + strandat 3900.581 kb on + strandat 3900.589 kb on - strandat 3900.589 kb on - strandat 3900.589 kb on - strandat 3900.621 kb on + strandat 3900.621 kb on + strandat 3900.621 kb on + strandat 3900.629 kb on - strandat 3900.682 kb on + strand, within CCNA_03733at 3900.721 kb on + strand, within CCNA_03733at 3900.747 kb on - strand, within CCNA_03733at 3900.781 kb on + strand, within CCNA_03733at 3900.794 kb on + strand, within CCNA_03733at 3900.795 kb on + strand, within CCNA_03733at 3900.810 kb on + strand, within CCNA_03733at 3900.815 kb on + strand, within CCNA_03733at 3900.818 kb on - strand, within CCNA_03733at 3900.829 kb on - strand, within CCNA_03733at 3900.837 kb on - strand, within CCNA_03733at 3900.862 kb on - strand, within CCNA_03733at 3900.932 kb on + strand, within CCNA_03733at 3900.932 kb on - strand, within CCNA_03733at 3900.940 kb on - strand, within CCNA_03733at 3900.953 kb on + strand, within CCNA_03733at 3901.043 kb on + strand, within CCNA_03733at 3901.067 kb on + strand, within CCNA_03733at 3901.170 kb on - strand, within CCNA_03733at 3901.181 kb on + strand, within CCNA_03733at 3901.183 kb on + strand, within CCNA_03733at 3901.191 kb on - strand, within CCNA_03733at 3901.207 kb on + strand, within CCNA_03733at 3901.229 kb on + strand, within CCNA_03733at 3901.257 kb on + strand, within CCNA_03733at 3901.273 kb on - strand, within CCNA_03733at 3901.273 kb on - strand, within CCNA_03733at 3901.273 kb on - strand, within CCNA_03733at 3901.317 kb on - strand, within CCNA_03733at 3901.325 kb on - strand, within CCNA_03733at 3901.328 kb on + strand, within CCNA_03733at 3901.352 kb on + strand, within CCNA_03733at 3901.416 kb on - strand, within CCNA_03733at 3901.428 kb on + strand, within CCNA_03733at 3901.436 kb on - strand, within CCNA_03733at 3901.487 kb on - strand, within CCNA_03733at 3901.487 kb on - strand, within CCNA_03733at 3901.535 kb on + strand, within CCNA_03733at 3901.599 kb on - strand, within CCNA_03733at 3901.601 kb on + strand, within CCNA_03733at 3901.606 kb on + strand, within CCNA_03733at 3901.620 kb on + strand, within CCNA_03733at 3901.625 kb on + strand, within CCNA_03733at 3901.633 kb on - strand, within CCNA_03733at 3901.650 kb on + strand, within CCNA_03733at 3901.658 kb on - strand, within CCNA_03733at 3901.706 kb on - strand, within CCNA_03733at 3901.725 kb on - strandat 3901.726 kb on + strandat 3901.734 kb on - strandat 3901.773 kb on - strandat 3901.786 kb on + strandat 3901.791 kb on + strandat 3901.791 kb on + strandat 3901.799 kb on - strandat 3901.854 kb on - strandat 3901.855 kb on - strandat 3901.863 kb on + strandat 3901.863 kb on + strandat 3901.863 kb on + strandat 3901.863 kb on + strandat 3901.863 kb on + strandat 3901.863 kb on + strandat 3901.863 kb on + strandat 3901.863 kb on + strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.871 kb on - strandat 3901.890 kb on + strandat 3901.898 kb on - strandat 3901.904 kb on + strandat 3901.927 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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3,899,577 + CCNA_03732 0.16 +0.6
3,899,586 - CCNA_03732 0.17 +0.4
3,899,620 - CCNA_03732 0.20 +0.1
3,899,649 + CCNA_03732 0.22 -0.7
3,899,650 + CCNA_03732 0.22 -0.6
3,899,720 + CCNA_03732 0.28 +0.1
3,899,818 + CCNA_03732 0.37 -2.0
3,899,825 + CCNA_03732 0.37 -0.6
3,899,825 + CCNA_03732 0.37 -0.7
3,899,833 - CCNA_03732 0.38 -0.6
3,899,916 - CCNA_03732 0.45 -2.5
3,900,026 - CCNA_03732 0.55 -2.0
3,900,051 - CCNA_03732 0.57 -0.2
3,900,149 + CCNA_03732 0.65 +0.1
3,900,211 + CCNA_03732 0.71 -1.5
3,900,224 + CCNA_03732 0.72 -1.3
3,900,224 + CCNA_03732 0.72 +0.5
3,900,318 + CCNA_03732 0.80 +1.1
3,900,326 - CCNA_03732 0.80 -1.5
3,900,365 + CCNA_03732 0.84 -0.2
3,900,567 + -1.4
3,900,581 + -2.3
3,900,589 - -0.2
3,900,589 - +0.2
3,900,589 - +0.2
3,900,621 + -1.4
3,900,621 + -0.2
3,900,621 + -3.5
3,900,629 - -0.3
3,900,682 + CCNA_03733 0.11 +0.0
3,900,721 + CCNA_03733 0.14 +0.4
3,900,747 - CCNA_03733 0.16 -0.0
3,900,781 + CCNA_03733 0.19 -0.4
3,900,794 + CCNA_03733 0.20 +0.4
3,900,795 + CCNA_03733 0.20 -0.6
3,900,810 + CCNA_03733 0.21 -1.0
3,900,815 + CCNA_03733 0.21 -1.6
3,900,818 - CCNA_03733 0.22 -0.0
3,900,829 - CCNA_03733 0.22 -0.6
3,900,837 - CCNA_03733 0.23 -0.7
3,900,862 - CCNA_03733 0.25 +0.1
3,900,932 + CCNA_03733 0.30 -1.8
3,900,932 - CCNA_03733 0.30 +0.5
3,900,940 - CCNA_03733 0.31 -1.3
3,900,953 + CCNA_03733 0.32 +0.4
3,901,043 + CCNA_03733 0.39 -0.6
3,901,067 + CCNA_03733 0.41 -1.2
3,901,170 - CCNA_03733 0.48 +0.2
3,901,181 + CCNA_03733 0.49 -0.2
3,901,183 + CCNA_03733 0.49 -2.1
3,901,191 - CCNA_03733 0.50 -0.9
3,901,207 + CCNA_03733 0.51 -1.7
3,901,229 + CCNA_03733 0.53 -0.3
3,901,257 + CCNA_03733 0.55 -0.9
3,901,273 - CCNA_03733 0.56 -0.9
3,901,273 - CCNA_03733 0.56 -1.6
3,901,273 - CCNA_03733 0.56 +0.4
3,901,317 - CCNA_03733 0.60 -0.8
3,901,325 - CCNA_03733 0.60 -0.9
3,901,328 + CCNA_03733 0.60 -0.5
3,901,352 + CCNA_03733 0.62 -0.7
3,901,416 - CCNA_03733 0.67 +0.7
3,901,428 + CCNA_03733 0.68 -1.9
3,901,436 - CCNA_03733 0.69 -2.1
3,901,487 - CCNA_03733 0.73 -0.2
3,901,487 - CCNA_03733 0.73 -0.2
3,901,535 + CCNA_03733 0.76 +1.1
3,901,599 - CCNA_03733 0.81 -0.3
3,901,601 + CCNA_03733 0.81 -1.7
3,901,606 + CCNA_03733 0.82 -1.7
3,901,620 + CCNA_03733 0.83 -0.9
3,901,625 + CCNA_03733 0.83 -0.0
3,901,633 - CCNA_03733 0.84 -0.8
3,901,650 + CCNA_03733 0.85 -2.1
3,901,658 - CCNA_03733 0.86 -0.2
3,901,706 - CCNA_03733 0.89 -0.6
3,901,725 - +0.3
3,901,726 + -1.5
3,901,734 - -0.8
3,901,773 - -1.4
3,901,786 + +0.6
3,901,791 + -2.2
3,901,791 + -0.7
3,901,799 - -0.5
3,901,854 - +0.6
3,901,855 - +0.9
3,901,863 + -0.6
3,901,863 + -0.9
3,901,863 + -1.3
3,901,863 + -2.6
3,901,863 + -0.2
3,901,863 + -0.9
3,901,863 + -1.0
3,901,863 + -2.3
3,901,871 - +0.3
3,901,871 - -0.0
3,901,871 - +1.3
3,901,871 - -0.5
3,901,871 - -1.0
3,901,871 - +0.2
3,901,871 - +0.4
3,901,871 - +0.4
3,901,871 - -0.5
3,901,871 - +0.2
3,901,871 - +0.4
3,901,890 + -1.3
3,901,898 - -0.9
3,901,904 + +0.0
3,901,927 - -0.1

Or see this region's nucleotide sequence