Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03704

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03702 and CCNA_03703 are separated by 148 nucleotidesCCNA_03703 and CCNA_03704 are separated by 114 nucleotidesCCNA_03704 and CCNA_03705 are separated by 118 nucleotidesCCNA_03705 and CCNA_R0089 are separated by 215 nucleotides CCNA_03702: CCNA_03702 - SSU ribosomal protein S1P, at 3,869,691 to 3,871,400 _03702 CCNA_03703: CCNA_03703 - cytidylate kinase, at 3,871,549 to 3,872,190 _03703 CCNA_03704: CCNA_03704 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,872,305 to 3,873,636 _03704 CCNA_03705: CCNA_03705 - hypothetical protein, at 3,873,755 to 3,874,225 _03705 CCNA_R0089: CCNA_R0089 - tRNA-Ala, at 3,874,441 to 3,874,516 _R0089 Position (kb) 3872 3873 3874Strain fitness (log2 ratio) -2 -1 0 1at 3872.186 kb on + strandat 3872.186 kb on + strandat 3872.217 kb on - strandat 3872.225 kb on + strandat 3872.226 kb on + strandat 3872.231 kb on + strandat 3872.233 kb on - strandat 3872.234 kb on - strandat 3872.234 kb on - strandat 3872.234 kb on - strandat 3872.239 kb on - strandat 3872.239 kb on - strandat 3872.253 kb on - strandat 3872.273 kb on - strandat 3872.273 kb on - strandat 3872.273 kb on - strandat 3872.281 kb on + strandat 3872.281 kb on + strandat 3872.281 kb on + strandat 3872.289 kb on - strandat 3872.301 kb on - strandat 3872.303 kb on + strandat 3872.303 kb on + strandat 3872.303 kb on + strandat 3872.303 kb on + strandat 3872.311 kb on - strandat 3872.317 kb on - strandat 3872.319 kb on + strandat 3872.325 kb on + strandat 3872.346 kb on - strandat 3873.317 kb on - strand, within CCNA_03704at 3873.616 kb on + strandat 3873.616 kb on + strandat 3873.624 kb on - strandat 3873.650 kb on + strandat 3873.658 kb on - strandat 3873.787 kb on - strandat 3873.851 kb on + strand, within CCNA_03705at 3873.883 kb on - strand, within CCNA_03705at 3873.951 kb on + strand, within CCNA_03705at 3874.109 kb on + strand, within CCNA_03705at 3874.117 kb on - strand, within CCNA_03705at 3874.273 kb on - strandat 3874.584 kb on - strandat 3874.584 kb on - strandat 3874.613 kb on - strandat 3874.615 kb on + strandat 3874.623 kb on - strandat 3874.623 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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3,872,186 + +0.2
3,872,186 + +0.2
3,872,217 - +0.2
3,872,225 + +0.7
3,872,226 + -1.2
3,872,231 + +0.0
3,872,233 - +0.6
3,872,234 - -0.0
3,872,234 - +0.1
3,872,234 - -0.4
3,872,239 - +0.9
3,872,239 - -1.2
3,872,253 - +0.2
3,872,273 - -0.4
3,872,273 - +0.6
3,872,273 - +0.1
3,872,281 + +0.7
3,872,281 + -1.6
3,872,281 + -0.7
3,872,289 - +0.8
3,872,301 - +0.2
3,872,303 + -0.1
3,872,303 + -0.5
3,872,303 + +0.2
3,872,303 + +0.4
3,872,311 - +0.4
3,872,317 - +1.1
3,872,319 + -2.0
3,872,325 + -0.5
3,872,346 - +0.5
3,873,317 - CCNA_03704 0.76 -2.2
3,873,616 + -0.9
3,873,616 + +0.0
3,873,624 - +0.2
3,873,650 + +0.1
3,873,658 - +0.8
3,873,787 - -0.4
3,873,851 + CCNA_03705 0.20 +0.1
3,873,883 - CCNA_03705 0.27 -0.2
3,873,951 + CCNA_03705 0.42 +0.1
3,874,109 + CCNA_03705 0.75 +0.5
3,874,117 - CCNA_03705 0.77 +0.7
3,874,273 - -0.2
3,874,584 - -0.4
3,874,584 - -1.4
3,874,613 - -0.6
3,874,615 + +0.3
3,874,623 - -0.1
3,874,623 - -0.0

Or see this region's nucleotide sequence