Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03646

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03644 and CCNA_03645 are separated by 171 nucleotidesCCNA_03645 and CCNA_03646 are separated by 9 nucleotidesCCNA_03646 and CCNA_03647 are separated by 80 nucleotidesCCNA_03647 and CCNA_03648 overlap by 4 nucleotides CCNA_03644: CCNA_03644 - succinate dehydrogenase cytochrome B-556 subunit, at 3,803,238 to 3,803,645 _03644 CCNA_03645: CCNA_03645 - nucleotide-sugar pyrophosphatase, at 3,803,817 to 3,804,404 _03645 CCNA_03646: CCNA_03646 - ATPase, at 3,804,414 to 3,805,532 _03646 CCNA_03647: CCNA_03647 - lysophospholipid acyltransferases, at 3,805,613 to 3,806,488 _03647 CCNA_03648: CCNA_03648 - YjeE family ATPase, at 3,806,485 to 3,806,931 _03648 Position (kb) 3804 3805 3806Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3803.721 kb on + strandat 3803.726 kb on - strandat 3803.728 kb on + strandat 3803.728 kb on + strandat 3803.736 kb on - strandat 3803.775 kb on + strandat 3803.783 kb on - strandat 3803.787 kb on + strandat 3803.797 kb on - strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.824 kb on + strandat 3803.829 kb on - strandat 3803.834 kb on + strandat 3803.834 kb on - strandat 3803.839 kb on - strandat 3803.844 kb on - strandat 3803.849 kb on - strandat 3803.874 kb on - strandat 3803.887 kb on - strand, within CCNA_03645at 3803.933 kb on - strand, within CCNA_03645at 3803.940 kb on + strand, within CCNA_03645at 3803.948 kb on - strand, within CCNA_03645at 3803.979 kb on - strand, within CCNA_03645at 3804.042 kb on + strand, within CCNA_03645at 3804.048 kb on + strand, within CCNA_03645at 3804.050 kb on - strand, within CCNA_03645at 3804.059 kb on - strand, within CCNA_03645at 3804.074 kb on - strand, within CCNA_03645at 3804.074 kb on - strand, within CCNA_03645at 3804.079 kb on - strand, within CCNA_03645at 3804.094 kb on + strand, within CCNA_03645at 3804.119 kb on - strand, within CCNA_03645at 3804.135 kb on + strand, within CCNA_03645at 3804.138 kb on - strand, within CCNA_03645at 3804.141 kb on - strand, within CCNA_03645at 3804.189 kb on + strand, within CCNA_03645at 3804.198 kb on + strand, within CCNA_03645at 3804.231 kb on - strand, within CCNA_03645at 3804.237 kb on + strand, within CCNA_03645at 3804.243 kb on + strand, within CCNA_03645at 3804.243 kb on - strand, within CCNA_03645at 3804.245 kb on + strand, within CCNA_03645at 3804.251 kb on - strand, within CCNA_03645at 3804.314 kb on - strand, within CCNA_03645at 3804.329 kb on - strand, within CCNA_03645at 3804.343 kb on + strand, within CCNA_03645at 3804.351 kb on - strandat 3804.363 kb on - strandat 3804.363 kb on - strandat 3804.426 kb on - strandat 3804.467 kb on + strandat 3804.483 kb on + strandat 3804.505 kb on + strandat 3804.505 kb on + strandat 3804.505 kb on + strandat 3804.505 kb on + strandat 3804.505 kb on + strandat 3804.508 kb on - strandat 3804.510 kb on + strandat 3804.513 kb on - strandat 3804.513 kb on - strandat 3804.513 kb on - strandat 3804.513 kb on - strandat 3804.513 kb on - strandat 3804.513 kb on - strandat 3804.513 kb on - strandat 3804.513 kb on - strandat 3804.518 kb on - strandat 3804.526 kb on + strand, within CCNA_03646at 3804.526 kb on + strand, within CCNA_03646at 3804.534 kb on - strand, within CCNA_03646at 3804.534 kb on - strand, within CCNA_03646at 3804.534 kb on - strand, within CCNA_03646at 3804.534 kb on - strand, within CCNA_03646at 3804.556 kb on + strand, within CCNA_03646at 3804.578 kb on + strand, within CCNA_03646at 3804.581 kb on - strand, within CCNA_03646at 3804.598 kb on + strand, within CCNA_03646at 3804.598 kb on + strand, within CCNA_03646at 3804.606 kb on - strand, within CCNA_03646at 3804.634 kb on - strand, within CCNA_03646at 3804.652 kb on - strand, within CCNA_03646at 3804.654 kb on - strand, within CCNA_03646at 3804.678 kb on - strand, within CCNA_03646at 3804.691 kb on - strand, within CCNA_03646at 3804.702 kb on - strand, within CCNA_03646at 3804.731 kb on - strand, within CCNA_03646at 3804.794 kb on - strand, within CCNA_03646at 3804.794 kb on - strand, within CCNA_03646at 3804.809 kb on - strand, within CCNA_03646at 3804.814 kb on + strand, within CCNA_03646at 3804.814 kb on + strand, within CCNA_03646at 3804.822 kb on - strand, within CCNA_03646at 3804.822 kb on - strand, within CCNA_03646at 3804.867 kb on + strand, within CCNA_03646at 3804.893 kb on + strand, within CCNA_03646at 3804.915 kb on + strand, within CCNA_03646at 3804.917 kb on + strand, within CCNA_03646at 3804.925 kb on - strand, within CCNA_03646at 3804.945 kb on - strand, within CCNA_03646at 3804.985 kb on + strand, within CCNA_03646at 3804.985 kb on + strand, within CCNA_03646at 3804.993 kb on - strand, within CCNA_03646at 3805.028 kb on + strand, within CCNA_03646at 3805.028 kb on + strand, within CCNA_03646at 3805.030 kb on - strand, within CCNA_03646at 3805.079 kb on + strand, within CCNA_03646at 3805.142 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.171 kb on + strand, within CCNA_03646at 3805.172 kb on - strand, within CCNA_03646at 3805.179 kb on - strand, within CCNA_03646at 3805.179 kb on - strand, within CCNA_03646at 3805.179 kb on - strand, within CCNA_03646at 3805.179 kb on - strand, within CCNA_03646at 3805.179 kb on - strand, within CCNA_03646at 3805.179 kb on - strand, within CCNA_03646at 3805.179 kb on - strand, within CCNA_03646at 3805.179 kb on - strand, within CCNA_03646at 3805.179 kb on - strand, within CCNA_03646at 3805.181 kb on + strand, within CCNA_03646at 3805.213 kb on + strand, within CCNA_03646at 3805.245 kb on - strand, within CCNA_03646at 3805.305 kb on + strand, within CCNA_03646at 3805.307 kb on - strand, within CCNA_03646at 3805.324 kb on + strand, within CCNA_03646at 3805.326 kb on - strand, within CCNA_03646at 3805.352 kb on + strand, within CCNA_03646at 3805.355 kb on - strand, within CCNA_03646at 3805.360 kb on - strand, within CCNA_03646at 3805.369 kb on + strand, within CCNA_03646at 3805.377 kb on - strand, within CCNA_03646at 3805.406 kb on - strand, within CCNA_03646at 3805.426 kb on + strandat 3805.426 kb on + strandat 3805.452 kb on - strandat 3805.482 kb on - strandat 3805.565 kb on + strandat 3805.573 kb on - strandat 3805.586 kb on + strandat 3805.640 kb on + strandat 3805.648 kb on - strandat 3805.732 kb on + strand, within CCNA_03647at 3805.732 kb on + strand, within CCNA_03647at 3805.732 kb on + strand, within CCNA_03647at 3805.732 kb on + strand, within CCNA_03647at 3805.733 kb on - strand, within CCNA_03647at 3805.737 kb on + strand, within CCNA_03647at 3805.740 kb on - strand, within CCNA_03647at 3805.740 kb on - strand, within CCNA_03647at 3805.745 kb on - strand, within CCNA_03647at 3805.779 kb on - strand, within CCNA_03647at 3805.782 kb on + strand, within CCNA_03647at 3805.791 kb on - strand, within CCNA_03647at 3805.793 kb on + strand, within CCNA_03647at 3805.817 kb on - strand, within CCNA_03647at 3805.954 kb on + strand, within CCNA_03647at 3805.962 kb on - strand, within CCNA_03647at 3805.987 kb on - strand, within CCNA_03647at 3806.018 kb on + strand, within CCNA_03647at 3806.018 kb on + strand, within CCNA_03647at 3806.030 kb on + strand, within CCNA_03647at 3806.030 kb on + strand, within CCNA_03647at 3806.031 kb on + strand, within CCNA_03647at 3806.038 kb on - strand, within CCNA_03647at 3806.038 kb on - strand, within CCNA_03647at 3806.081 kb on + strand, within CCNA_03647at 3806.086 kb on + strand, within CCNA_03647at 3806.087 kb on + strand, within CCNA_03647at 3806.124 kb on - strand, within CCNA_03647at 3806.187 kb on - strand, within CCNA_03647at 3806.201 kb on + strand, within CCNA_03647at 3806.208 kb on - strand, within CCNA_03647at 3806.217 kb on - strand, within CCNA_03647at 3806.224 kb on + strand, within CCNA_03647at 3806.260 kb on - strand, within CCNA_03647at 3806.281 kb on - strand, within CCNA_03647at 3806.281 kb on - strand, within CCNA_03647at 3806.307 kb on + strand, within CCNA_03647at 3806.321 kb on + strand, within CCNA_03647at 3806.336 kb on + strand, within CCNA_03647at 3806.344 kb on - strand, within CCNA_03647at 3806.344 kb on - strand, within CCNA_03647at 3806.349 kb on - strand, within CCNA_03647at 3806.378 kb on - strand, within CCNA_03647at 3806.378 kb on - strand, within CCNA_03647at 3806.414 kb on + strandat 3806.437 kb on + strandat 3806.445 kb on - strandat 3806.457 kb on - strandat 3806.477 kb on + strandat 3806.499 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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3,803,721 + +0.6
3,803,726 - +0.5
3,803,728 + -0.9
3,803,728 + -0.7
3,803,736 - -0.2
3,803,775 + +0.9
3,803,783 - +0.1
3,803,787 + -0.5
3,803,797 - -0.1
3,803,814 + +0.7
3,803,814 + +0.6
3,803,814 + +1.5
3,803,814 + -1.8
3,803,814 + +0.6
3,803,822 - +0.9
3,803,822 - -0.5
3,803,822 - -0.8
3,803,822 - +0.6
3,803,822 - -0.3
3,803,824 + -1.4
3,803,829 - +1.0
3,803,834 + -1.6
3,803,834 - -0.0
3,803,839 - -0.3
3,803,844 - +0.2
3,803,849 - +1.5
3,803,874 - +0.3
3,803,887 - CCNA_03645 0.12 -0.4
3,803,933 - CCNA_03645 0.20 +0.1
3,803,940 + CCNA_03645 0.21 -0.7
3,803,948 - CCNA_03645 0.22 +0.1
3,803,979 - CCNA_03645 0.28 +0.1
3,804,042 + CCNA_03645 0.38 -1.6
3,804,048 + CCNA_03645 0.39 -1.0
3,804,050 - CCNA_03645 0.40 -0.0
3,804,059 - CCNA_03645 0.41 +0.6
3,804,074 - CCNA_03645 0.44 -0.1
3,804,074 - CCNA_03645 0.44 -0.6
3,804,079 - CCNA_03645 0.45 -0.0
3,804,094 + CCNA_03645 0.47 -1.7
3,804,119 - CCNA_03645 0.51 +0.1
3,804,135 + CCNA_03645 0.54 -0.4
3,804,138 - CCNA_03645 0.55 -0.2
3,804,141 - CCNA_03645 0.55 +0.1
3,804,189 + CCNA_03645 0.63 -0.7
3,804,198 + CCNA_03645 0.65 +0.0
3,804,231 - CCNA_03645 0.70 +0.1
3,804,237 + CCNA_03645 0.71 -0.4
3,804,243 + CCNA_03645 0.72 +0.8
3,804,243 - CCNA_03645 0.72 -0.6
3,804,245 + CCNA_03645 0.73 -0.2
3,804,251 - CCNA_03645 0.74 +0.5
3,804,314 - CCNA_03645 0.85 +1.6
3,804,329 - CCNA_03645 0.87 -0.3
3,804,343 + CCNA_03645 0.89 -0.5
3,804,351 - -0.0
3,804,363 - -0.8
3,804,363 - -0.5
3,804,426 - +0.3
3,804,467 + -1.3
3,804,483 + +1.9
3,804,505 + +0.3
3,804,505 + -0.9
3,804,505 + -0.9
3,804,505 + +0.4
3,804,505 + +0.2
3,804,508 - +0.4
3,804,510 + -0.3
3,804,513 - -0.3
3,804,513 - +0.4
3,804,513 - -0.0
3,804,513 - -0.0
3,804,513 - -0.1
3,804,513 - +1.0
3,804,513 - -0.4
3,804,513 - +0.4
3,804,518 - +0.2
3,804,526 + CCNA_03646 0.10 +0.9
3,804,526 + CCNA_03646 0.10 +1.1
3,804,534 - CCNA_03646 0.11 +1.6
3,804,534 - CCNA_03646 0.11 +0.9
3,804,534 - CCNA_03646 0.11 -0.5
3,804,534 - CCNA_03646 0.11 +0.1
3,804,556 + CCNA_03646 0.13 +0.0
3,804,578 + CCNA_03646 0.15 +0.1
3,804,581 - CCNA_03646 0.15 +0.3
3,804,598 + CCNA_03646 0.16 +0.6
3,804,598 + CCNA_03646 0.16 -0.2
3,804,606 - CCNA_03646 0.17 +1.1
3,804,634 - CCNA_03646 0.20 +0.8
3,804,652 - CCNA_03646 0.21 +1.0
3,804,654 - CCNA_03646 0.21 -1.4
3,804,678 - CCNA_03646 0.24 +0.1
3,804,691 - CCNA_03646 0.25 -0.8
3,804,702 - CCNA_03646 0.26 +0.3
3,804,731 - CCNA_03646 0.28 +0.3
3,804,794 - CCNA_03646 0.34 -0.0
3,804,794 - CCNA_03646 0.34 -0.6
3,804,809 - CCNA_03646 0.35 +0.1
3,804,814 + CCNA_03646 0.36 -0.0
3,804,814 + CCNA_03646 0.36 +0.4
3,804,822 - CCNA_03646 0.36 +0.6
3,804,822 - CCNA_03646 0.36 -0.7
3,804,867 + CCNA_03646 0.40 -0.7
3,804,893 + CCNA_03646 0.43 +0.5
3,804,915 + CCNA_03646 0.45 -0.5
3,804,917 + CCNA_03646 0.45 -1.8
3,804,925 - CCNA_03646 0.46 -0.7
3,804,945 - CCNA_03646 0.47 +0.4
3,804,985 + CCNA_03646 0.51 -1.5
3,804,985 + CCNA_03646 0.51 -1.7
3,804,993 - CCNA_03646 0.52 -1.7
3,805,028 + CCNA_03646 0.55 -0.3
3,805,028 + CCNA_03646 0.55 -0.4
3,805,030 - CCNA_03646 0.55 +0.3
3,805,079 + CCNA_03646 0.59 -1.2
3,805,142 + CCNA_03646 0.65 +0.1
3,805,171 + CCNA_03646 0.68 -0.3
3,805,171 + CCNA_03646 0.68 +1.1
3,805,171 + CCNA_03646 0.68 +0.0
3,805,171 + CCNA_03646 0.68 +0.8
3,805,171 + CCNA_03646 0.68 -0.5
3,805,171 + CCNA_03646 0.68 -1.2
3,805,171 + CCNA_03646 0.68 -0.2
3,805,171 + CCNA_03646 0.68 -0.5
3,805,171 + CCNA_03646 0.68 -0.0
3,805,171 + CCNA_03646 0.68 -1.4
3,805,171 + CCNA_03646 0.68 -0.4
3,805,171 + CCNA_03646 0.68 +0.7
3,805,171 + CCNA_03646 0.68 -0.4
3,805,171 + CCNA_03646 0.68 -0.1
3,805,171 + CCNA_03646 0.68 -0.1
3,805,171 + CCNA_03646 0.68 -0.4
3,805,172 - CCNA_03646 0.68 -1.0
3,805,179 - CCNA_03646 0.68 +1.4
3,805,179 - CCNA_03646 0.68 -0.7
3,805,179 - CCNA_03646 0.68 +0.3
3,805,179 - CCNA_03646 0.68 -0.6
3,805,179 - CCNA_03646 0.68 +0.6
3,805,179 - CCNA_03646 0.68 -1.0
3,805,179 - CCNA_03646 0.68 -0.1
3,805,179 - CCNA_03646 0.68 -0.4
3,805,179 - CCNA_03646 0.68 +0.0
3,805,181 + CCNA_03646 0.69 -0.4
3,805,213 + CCNA_03646 0.71 -1.0
3,805,245 - CCNA_03646 0.74 -0.1
3,805,305 + CCNA_03646 0.80 +0.0
3,805,307 - CCNA_03646 0.80 -1.0
3,805,324 + CCNA_03646 0.81 +0.1
3,805,326 - CCNA_03646 0.82 +1.1
3,805,352 + CCNA_03646 0.84 -0.1
3,805,355 - CCNA_03646 0.84 +0.3
3,805,360 - CCNA_03646 0.85 -0.9
3,805,369 + CCNA_03646 0.85 +0.5
3,805,377 - CCNA_03646 0.86 -0.9
3,805,406 - CCNA_03646 0.89 -0.5
3,805,426 + -2.4
3,805,426 + +0.8
3,805,452 - +0.6
3,805,482 - -0.1
3,805,565 + -1.2
3,805,573 - -0.7
3,805,586 + +0.1
3,805,640 + -0.1
3,805,648 - -0.3
3,805,732 + CCNA_03647 0.14 +0.5
3,805,732 + CCNA_03647 0.14 +0.6
3,805,732 + CCNA_03647 0.14 -0.7
3,805,732 + CCNA_03647 0.14 -0.1
3,805,733 - CCNA_03647 0.14 +0.0
3,805,737 + CCNA_03647 0.14 -0.4
3,805,740 - CCNA_03647 0.14 -0.3
3,805,740 - CCNA_03647 0.14 -0.6
3,805,745 - CCNA_03647 0.15 +0.3
3,805,779 - CCNA_03647 0.19 -1.2
3,805,782 + CCNA_03647 0.19 -0.4
3,805,791 - CCNA_03647 0.20 -0.4
3,805,793 + CCNA_03647 0.21 +2.4
3,805,817 - CCNA_03647 0.23 +0.2
3,805,954 + CCNA_03647 0.39 -0.5
3,805,962 - CCNA_03647 0.40 -0.2
3,805,987 - CCNA_03647 0.43 -0.4
3,806,018 + CCNA_03647 0.46 +0.2
3,806,018 + CCNA_03647 0.46 -1.0
3,806,030 + CCNA_03647 0.48 +0.7
3,806,030 + CCNA_03647 0.48 +0.4
3,806,031 + CCNA_03647 0.48 -0.0
3,806,038 - CCNA_03647 0.49 -0.0
3,806,038 - CCNA_03647 0.49 +2.1
3,806,081 + CCNA_03647 0.53 -0.7
3,806,086 + CCNA_03647 0.54 +0.1
3,806,087 + CCNA_03647 0.54 -0.8
3,806,124 - CCNA_03647 0.58 -0.8
3,806,187 - CCNA_03647 0.66 -0.9
3,806,201 + CCNA_03647 0.67 +0.3
3,806,208 - CCNA_03647 0.68 -0.4
3,806,217 - CCNA_03647 0.69 -0.2
3,806,224 + CCNA_03647 0.70 -0.2
3,806,260 - CCNA_03647 0.74 -0.4
3,806,281 - CCNA_03647 0.76 -0.8
3,806,281 - CCNA_03647 0.76 -0.6
3,806,307 + CCNA_03647 0.79 -0.4
3,806,321 + CCNA_03647 0.81 -0.4
3,806,336 + CCNA_03647 0.83 +1.0
3,806,344 - CCNA_03647 0.83 -1.2
3,806,344 - CCNA_03647 0.83 -0.3
3,806,349 - CCNA_03647 0.84 -0.2
3,806,378 - CCNA_03647 0.87 -0.6
3,806,378 - CCNA_03647 0.87 +1.4
3,806,414 + -0.2
3,806,437 + +0.1
3,806,445 - +1.7
3,806,457 - -2.8
3,806,477 + -0.8
3,806,499 - -2.5

Or see this region's nucleotide sequence