Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03581 and CCNA_03582 are separated by 3 nucleotides CCNA_03582 and CCNA_03583 overlap by 4 nucleotides CCNA_03583 and CCNA_03584 are separated by 139 nucleotides CCNA_03584 and CCNA_03585 are separated by 79 nucleotides
CCNA_03581: CCNA_03581 - transporter, drug/metabolite exporter family, at 3,737,998 to 3,738,870
_03581
CCNA_03582: CCNA_03582 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 3,738,874 to 3,739,671
_03582
CCNA_03583: CCNA_03583 - hypothetical protein, at 3,739,668 to 3,739,859
_03583
CCNA_03584: CCNA_03584 - histidine phosphotransferase ChpT, at 3,739,999 to 3,740,676
_03584
CCNA_03585: CCNA_03585 - chemotaxis receiver domain protein CheYIV, at 3,740,756 to 3,741,133
_03585
Position (kb)
3739
3740 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3738.688 kb on + strand, within CCNA_03581 at 3738.688 kb on + strand, within CCNA_03581 at 3738.698 kb on + strand, within CCNA_03581 at 3738.706 kb on + strand, within CCNA_03581 at 3738.716 kb on + strand, within CCNA_03581 at 3738.716 kb on + strand, within CCNA_03581 at 3738.716 kb on + strand, within CCNA_03581 at 3738.719 kb on - strand, within CCNA_03581 at 3738.724 kb on - strand, within CCNA_03581 at 3738.762 kb on - strand, within CCNA_03581 at 3738.779 kb on - strand, within CCNA_03581 at 3738.838 kb on - strand at 3738.855 kb on - strand at 3738.872 kb on + strand at 3738.872 kb on + strand at 3738.872 kb on + strand at 3738.880 kb on - strand at 3739.630 kb on - strand at 3739.666 kb on + strand at 3739.674 kb on - strand at 3739.722 kb on - strand, within CCNA_03583 at 3739.759 kb on + strand, within CCNA_03583 at 3739.785 kb on + strand, within CCNA_03583 at 3739.786 kb on + strand, within CCNA_03583 at 3739.788 kb on - strand, within CCNA_03583 at 3739.791 kb on + strand, within CCNA_03583 at 3739.799 kb on - strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.819 kb on - strand, within CCNA_03583 at 3739.846 kb on - strand at 3739.896 kb on - strand at 3739.950 kb on + strand at 3739.950 kb on + strand at 3739.950 kb on + strand at 3739.953 kb on - strand at 3739.958 kb on - strand at 3739.963 kb on - strand at 3739.963 kb on - strand at 3739.980 kb on - strand at 3739.985 kb on - strand at 3740.015 kb on - strand at 3740.721 kb on + strand at 3740.721 kb on + strand at 3740.728 kb on - strand at 3740.753 kb on + strand at 3740.761 kb on - strand at 3740.761 kb on - strand at 3740.761 kb on - strand at 3740.768 kb on + strand at 3740.775 kb on + strand at 3740.776 kb on - strand at 3740.776 kb on - strand at 3740.840 kb on + strand, within CCNA_03585 at 3740.848 kb on - strand, within CCNA_03585
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 3,738,688 + CCNA_03581 0.79 -0.3 3,738,688 + CCNA_03581 0.79 -0.8 3,738,698 + CCNA_03581 0.80 -0.3 3,738,706 + CCNA_03581 0.81 -0.4 3,738,716 + CCNA_03581 0.82 -0.8 3,738,716 + CCNA_03581 0.82 -0.1 3,738,716 + CCNA_03581 0.82 +1.2 3,738,719 - CCNA_03581 0.83 +0.3 3,738,724 - CCNA_03581 0.83 -1.1 3,738,762 - CCNA_03581 0.88 -0.8 3,738,779 - CCNA_03581 0.89 -0.5 3,738,838 - +2.1 3,738,855 - -0.4 3,738,872 + +1.5 3,738,872 + -0.1 3,738,872 + +0.1 3,738,880 - -0.2 3,739,630 - -0.5 3,739,666 + -0.2 3,739,674 - -0.3 3,739,722 - CCNA_03583 0.28 +0.3 3,739,759 + CCNA_03583 0.47 -1.2 3,739,785 + CCNA_03583 0.61 -1.1 3,739,786 + CCNA_03583 0.61 -0.9 3,739,788 - CCNA_03583 0.62 +0.0 3,739,791 + CCNA_03583 0.64 -2.2 3,739,799 - CCNA_03583 0.68 +0.2 3,739,811 + CCNA_03583 0.74 -0.9 3,739,819 - CCNA_03583 0.79 -0.1 3,739,846 - +0.2 3,739,896 - -0.1 3,739,950 + -0.4 3,739,950 + -0.1 3,739,950 + -1.2 3,739,953 - -2.4 3,739,958 - +0.4 3,739,963 - -0.1 3,739,963 - -0.1 3,739,980 - -0.1 3,739,985 - -1.0 3,740,015 - +0.5 3,740,721 + +0.4 3,740,721 + +0.1 3,740,728 - +0.2 3,740,753 + -0.1 3,740,761 - +0.3 3,740,761 - -2.7 3,740,761 - -0.5 3,740,768 + -0.6 3,740,775 + -0.1 3,740,776 - -0.3 3,740,776 - -0.5 3,740,840 + CCNA_03585 0.22 +0.4 3,740,848 - CCNA_03585 0.24 +0.0
Or see this region's nucleotide sequence