Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03583

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03581 and CCNA_03582 are separated by 3 nucleotidesCCNA_03582 and CCNA_03583 overlap by 4 nucleotidesCCNA_03583 and CCNA_03584 are separated by 139 nucleotidesCCNA_03584 and CCNA_03585 are separated by 79 nucleotides CCNA_03581: CCNA_03581 - transporter, drug/metabolite exporter family, at 3,737,998 to 3,738,870 _03581 CCNA_03582: CCNA_03582 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 3,738,874 to 3,739,671 _03582 CCNA_03583: CCNA_03583 - hypothetical protein, at 3,739,668 to 3,739,859 _03583 CCNA_03584: CCNA_03584 - histidine phosphotransferase ChpT, at 3,739,999 to 3,740,676 _03584 CCNA_03585: CCNA_03585 - chemotaxis receiver domain protein CheYIV, at 3,740,756 to 3,741,133 _03585 Position (kb) 3739 3740Strain fitness (log2 ratio) -2 -1 0 1 2at 3738.688 kb on + strand, within CCNA_03581at 3738.688 kb on + strand, within CCNA_03581at 3738.698 kb on + strand, within CCNA_03581at 3738.706 kb on + strand, within CCNA_03581at 3738.716 kb on + strand, within CCNA_03581at 3738.716 kb on + strand, within CCNA_03581at 3738.716 kb on + strand, within CCNA_03581at 3738.719 kb on - strand, within CCNA_03581at 3738.724 kb on - strand, within CCNA_03581at 3738.762 kb on - strand, within CCNA_03581at 3738.779 kb on - strand, within CCNA_03581at 3738.838 kb on - strandat 3738.855 kb on - strandat 3738.872 kb on + strandat 3738.872 kb on + strandat 3738.872 kb on + strandat 3738.880 kb on - strandat 3739.630 kb on - strandat 3739.666 kb on + strandat 3739.674 kb on - strandat 3739.722 kb on - strand, within CCNA_03583at 3739.759 kb on + strand, within CCNA_03583at 3739.785 kb on + strand, within CCNA_03583at 3739.786 kb on + strand, within CCNA_03583at 3739.788 kb on - strand, within CCNA_03583at 3739.791 kb on + strand, within CCNA_03583at 3739.799 kb on - strand, within CCNA_03583at 3739.811 kb on + strand, within CCNA_03583at 3739.819 kb on - strand, within CCNA_03583at 3739.846 kb on - strandat 3739.896 kb on - strandat 3739.950 kb on + strandat 3739.950 kb on + strandat 3739.950 kb on + strandat 3739.953 kb on - strandat 3739.958 kb on - strandat 3739.963 kb on - strandat 3739.963 kb on - strandat 3739.980 kb on - strandat 3739.985 kb on - strandat 3740.015 kb on - strandat 3740.721 kb on + strandat 3740.721 kb on + strandat 3740.728 kb on - strandat 3740.753 kb on + strandat 3740.761 kb on - strandat 3740.761 kb on - strandat 3740.761 kb on - strandat 3740.768 kb on + strandat 3740.775 kb on + strandat 3740.776 kb on - strandat 3740.776 kb on - strandat 3740.840 kb on + strand, within CCNA_03585at 3740.848 kb on - strand, within CCNA_03585

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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3,738,688 + CCNA_03581 0.79 -0.3
3,738,688 + CCNA_03581 0.79 -0.8
3,738,698 + CCNA_03581 0.80 -0.3
3,738,706 + CCNA_03581 0.81 -0.4
3,738,716 + CCNA_03581 0.82 -0.8
3,738,716 + CCNA_03581 0.82 -0.1
3,738,716 + CCNA_03581 0.82 +1.2
3,738,719 - CCNA_03581 0.83 +0.3
3,738,724 - CCNA_03581 0.83 -1.1
3,738,762 - CCNA_03581 0.88 -0.8
3,738,779 - CCNA_03581 0.89 -0.5
3,738,838 - +2.1
3,738,855 - -0.4
3,738,872 + +1.5
3,738,872 + -0.1
3,738,872 + +0.1
3,738,880 - -0.2
3,739,630 - -0.5
3,739,666 + -0.2
3,739,674 - -0.3
3,739,722 - CCNA_03583 0.28 +0.3
3,739,759 + CCNA_03583 0.47 -1.2
3,739,785 + CCNA_03583 0.61 -1.1
3,739,786 + CCNA_03583 0.61 -0.9
3,739,788 - CCNA_03583 0.62 +0.0
3,739,791 + CCNA_03583 0.64 -2.2
3,739,799 - CCNA_03583 0.68 +0.2
3,739,811 + CCNA_03583 0.74 -0.9
3,739,819 - CCNA_03583 0.79 -0.1
3,739,846 - +0.2
3,739,896 - -0.1
3,739,950 + -0.4
3,739,950 + -0.1
3,739,950 + -1.2
3,739,953 - -2.4
3,739,958 - +0.4
3,739,963 - -0.1
3,739,963 - -0.1
3,739,980 - -0.1
3,739,985 - -1.0
3,740,015 - +0.5
3,740,721 + +0.4
3,740,721 + +0.1
3,740,728 - +0.2
3,740,753 + -0.1
3,740,761 - +0.3
3,740,761 - -2.7
3,740,761 - -0.5
3,740,768 + -0.6
3,740,775 + -0.1
3,740,776 - -0.3
3,740,776 - -0.5
3,740,840 + CCNA_03585 0.22 +0.4
3,740,848 - CCNA_03585 0.24 +0.0

Or see this region's nucleotide sequence