Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03417 and CCNA_03418 are separated by 3 nucleotides CCNA_03418 and CCNA_03419 are separated by 94 nucleotides CCNA_03419 and CCNA_03420 overlap by 11 nucleotides CCNA_03420 and CCNA_03421 are separated by 111 nucleotides
CCNA_03417: CCNA_03417 - hydrolase, at 3,583,841 to 3,584,764
_03417
CCNA_03418: CCNA_03418 - thioesterase superfamily protein, at 3,584,768 to 3,585,241
_03418
CCNA_03419: CCNA_03419 - RNA polymerase ECF-type sigma factor, at 3,585,336 to 3,585,836
_03419
CCNA_03420: CCNA_03420 - hypothetical protein, at 3,585,826 to 3,586,425
_03420
CCNA_03421: CCNA_03421 - 2-polyprenylphenol 6-hydroxylase accessory protein ubiB, at 3,586,537 to 3,587,892
_03421
Position (kb)
3585
3586 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3584.337 kb on + strand, within CCNA_03417 at 3584.337 kb on + strand, within CCNA_03417 at 3584.345 kb on - strand, within CCNA_03417 at 3584.345 kb on - strand, within CCNA_03417 at 3584.345 kb on - strand, within CCNA_03417 at 3584.345 kb on - strand, within CCNA_03417 at 3584.355 kb on - strand, within CCNA_03417 at 3584.394 kb on - strand, within CCNA_03417 at 3584.408 kb on - strand, within CCNA_03417 at 3584.408 kb on - strand, within CCNA_03417 at 3584.408 kb on - strand, within CCNA_03417 at 3584.413 kb on - strand, within CCNA_03417 at 3584.432 kb on + strand, within CCNA_03417 at 3584.432 kb on + strand, within CCNA_03417 at 3584.449 kb on + strand, within CCNA_03417 at 3584.467 kb on - strand, within CCNA_03417 at 3584.467 kb on - strand, within CCNA_03417 at 3584.478 kb on + strand, within CCNA_03417 at 3584.522 kb on - strand, within CCNA_03417 at 3584.557 kb on - strand, within CCNA_03417 at 3584.568 kb on + strand, within CCNA_03417 at 3584.568 kb on + strand, within CCNA_03417 at 3584.576 kb on - strand, within CCNA_03417 at 3584.598 kb on - strand, within CCNA_03417 at 3584.615 kb on + strand, within CCNA_03417 at 3584.623 kb on - strand, within CCNA_03417 at 3584.623 kb on - strand, within CCNA_03417 at 3584.715 kb on + strand at 3584.717 kb on + strand at 3584.723 kb on - strand at 3584.723 kb on - strand at 3584.723 kb on - strand at 3584.755 kb on - strand at 3584.760 kb on + strand at 3584.760 kb on + strand at 3584.774 kb on - strand at 3584.791 kb on + strand at 3584.905 kb on - strand, within CCNA_03418 at 3584.912 kb on - strand, within CCNA_03418 at 3584.998 kb on - strand, within CCNA_03418 at 3585.022 kb on - strand, within CCNA_03418 at 3585.052 kb on - strand, within CCNA_03418 at 3585.057 kb on + strand, within CCNA_03418 at 3585.067 kb on + strand, within CCNA_03418 at 3585.075 kb on - strand, within CCNA_03418 at 3585.088 kb on - strand, within CCNA_03418 at 3585.099 kb on - strand, within CCNA_03418 at 3585.112 kb on - strand, within CCNA_03418 at 3585.119 kb on + strand, within CCNA_03418 at 3585.119 kb on + strand, within CCNA_03418 at 3585.126 kb on - strand, within CCNA_03418 at 3585.127 kb on - strand, within CCNA_03418 at 3585.127 kb on - strand, within CCNA_03418 at 3585.127 kb on - strand, within CCNA_03418 at 3585.144 kb on - strand, within CCNA_03418 at 3585.213 kb on + strand at 3585.213 kb on + strand at 3585.221 kb on - strand at 3585.222 kb on + strand at 3585.305 kb on + strand at 3585.313 kb on - strand at 3585.315 kb on + strand at 3585.339 kb on + strand at 3585.339 kb on + strand at 3585.375 kb on - strand at 3585.383 kb on + strand at 3585.392 kb on + strand, within CCNA_03419 at 3585.421 kb on + strand, within CCNA_03419 at 3585.421 kb on + strand, within CCNA_03419 at 3585.501 kb on + strand, within CCNA_03419 at 3585.502 kb on - strand, within CCNA_03419 at 3585.518 kb on - strand, within CCNA_03419 at 3585.650 kb on + strand, within CCNA_03419 at 3585.650 kb on + strand, within CCNA_03419 at 3585.650 kb on + strand, within CCNA_03419 at 3585.650 kb on + strand, within CCNA_03419 at 3585.658 kb on - strand, within CCNA_03419 at 3585.658 kb on - strand, within CCNA_03419 at 3585.663 kb on - strand, within CCNA_03419 at 3585.672 kb on + strand, within CCNA_03419 at 3585.723 kb on - strand, within CCNA_03419 at 3585.726 kb on + strand, within CCNA_03419 at 3585.738 kb on + strand, within CCNA_03419 at 3585.774 kb on + strand, within CCNA_03419 at 3585.774 kb on + strand, within CCNA_03419 at 3585.792 kb on - strand at 3585.806 kb on - strand at 3585.886 kb on + strand, within CCNA_03420 at 3585.886 kb on + strand, within CCNA_03420 at 3585.886 kb on + strand, within CCNA_03420 at 3585.886 kb on + strand, within CCNA_03420 at 3585.886 kb on + strand, within CCNA_03420 at 3585.886 kb on + strand, within CCNA_03420 at 3585.886 kb on + strand, within CCNA_03420 at 3585.886 kb on + strand, within CCNA_03420 at 3585.891 kb on + strand, within CCNA_03420 at 3585.891 kb on + strand, within CCNA_03420 at 3585.891 kb on + strand, within CCNA_03420 at 3585.951 kb on + strand, within CCNA_03420 at 3586.027 kb on + strand, within CCNA_03420 at 3586.054 kb on + strand, within CCNA_03420 at 3586.056 kb on + strand, within CCNA_03420 at 3586.085 kb on + strand, within CCNA_03420 at 3586.269 kb on - strand, within CCNA_03420 at 3586.273 kb on + strand, within CCNA_03420 at 3586.371 kb on + strand at 3586.420 kb on + strand at 3586.428 kb on - strand at 3586.428 kb on - strand at 3586.428 kb on - strand at 3586.469 kb on - strand at 3586.495 kb on - strand at 3586.549 kb on - strand at 3586.570 kb on + strand at 3586.578 kb on - strand at 3586.587 kb on + strand at 3586.587 kb on + strand at 3586.595 kb on - strand at 3586.597 kb on + strand at 3586.606 kb on - strand at 3586.618 kb on - strand at 3586.636 kb on - strand at 3586.647 kb on + strand at 3586.648 kb on + strand at 3586.684 kb on + strand, within CCNA_03421 at 3586.753 kb on + strand, within CCNA_03421 at 3586.754 kb on - strand, within CCNA_03421 at 3586.772 kb on - strand, within CCNA_03421 at 3586.776 kb on - strand, within CCNA_03421 at 3586.812 kb on - strand, within CCNA_03421
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 3,584,337 + CCNA_03417 0.54 -0.9 3,584,337 + CCNA_03417 0.54 -1.0 3,584,345 - CCNA_03417 0.55 -0.3 3,584,345 - CCNA_03417 0.55 -0.1 3,584,345 - CCNA_03417 0.55 +1.2 3,584,345 - CCNA_03417 0.55 +0.1 3,584,355 - CCNA_03417 0.56 -1.1 3,584,394 - CCNA_03417 0.60 -2.9 3,584,408 - CCNA_03417 0.61 -0.1 3,584,408 - CCNA_03417 0.61 +0.2 3,584,408 - CCNA_03417 0.61 +0.2 3,584,413 - CCNA_03417 0.62 -0.9 3,584,432 + CCNA_03417 0.64 +0.1 3,584,432 + CCNA_03417 0.64 -1.4 3,584,449 + CCNA_03417 0.66 -0.3 3,584,467 - CCNA_03417 0.68 -0.4 3,584,467 - CCNA_03417 0.68 -0.4 3,584,478 + CCNA_03417 0.69 -2.7 3,584,522 - CCNA_03417 0.74 -0.7 3,584,557 - CCNA_03417 0.77 +0.9 3,584,568 + CCNA_03417 0.79 -0.1 3,584,568 + CCNA_03417 0.79 +0.6 3,584,576 - CCNA_03417 0.80 +1.3 3,584,598 - CCNA_03417 0.82 +1.0 3,584,615 + CCNA_03417 0.84 -1.7 3,584,623 - CCNA_03417 0.85 +0.5 3,584,623 - CCNA_03417 0.85 +0.0 3,584,715 + -0.6 3,584,717 + -0.8 3,584,723 - -0.4 3,584,723 - +0.1 3,584,723 - -1.0 3,584,755 - -0.5 3,584,760 + -1.2 3,584,760 + +0.0 3,584,774 - +0.2 3,584,791 + +0.6 3,584,905 - CCNA_03418 0.29 +1.2 3,584,912 - CCNA_03418 0.30 +0.0 3,584,998 - CCNA_03418 0.49 -0.6 3,585,022 - CCNA_03418 0.54 -0.4 3,585,052 - CCNA_03418 0.60 -0.2 3,585,057 + CCNA_03418 0.61 +0.2 3,585,067 + CCNA_03418 0.63 -0.1 3,585,075 - CCNA_03418 0.65 +1.1 3,585,088 - CCNA_03418 0.68 -0.3 3,585,099 - CCNA_03418 0.70 -0.1 3,585,112 - CCNA_03418 0.73 -0.5 3,585,119 + CCNA_03418 0.74 -1.1 3,585,119 + CCNA_03418 0.74 +0.4 3,585,126 - CCNA_03418 0.76 -0.6 3,585,127 - CCNA_03418 0.76 +0.3 3,585,127 - CCNA_03418 0.76 +0.0 3,585,127 - CCNA_03418 0.76 +0.4 3,585,144 - CCNA_03418 0.79 +0.9 3,585,213 + +0.1 3,585,213 + +0.4 3,585,221 - -0.2 3,585,222 + +0.0 3,585,305 + +0.6 3,585,313 - +0.2 3,585,315 + +0.5 3,585,339 + -0.1 3,585,339 + -1.1 3,585,375 - +0.0 3,585,383 + -1.6 3,585,392 + CCNA_03419 0.11 -0.6 3,585,421 + CCNA_03419 0.17 +0.1 3,585,421 + CCNA_03419 0.17 -0.5 3,585,501 + CCNA_03419 0.33 +0.5 3,585,502 - CCNA_03419 0.33 +0.9 3,585,518 - CCNA_03419 0.36 +0.0 3,585,650 + CCNA_03419 0.63 +0.4 3,585,650 + CCNA_03419 0.63 +0.4 3,585,650 + CCNA_03419 0.63 +0.7 3,585,650 + CCNA_03419 0.63 +0.5 3,585,658 - CCNA_03419 0.64 -0.4 3,585,658 - CCNA_03419 0.64 -0.4 3,585,663 - CCNA_03419 0.65 -0.3 3,585,672 + CCNA_03419 0.67 -0.5 3,585,723 - CCNA_03419 0.77 +0.6 3,585,726 + CCNA_03419 0.78 -1.1 3,585,738 + CCNA_03419 0.80 -0.2 3,585,774 + CCNA_03419 0.87 -0.6 3,585,774 + CCNA_03419 0.87 -1.4 3,585,792 - -1.0 3,585,806 - +0.2 3,585,886 + CCNA_03420 0.10 -0.4 3,585,886 + CCNA_03420 0.10 +0.7 3,585,886 + CCNA_03420 0.10 +0.2 3,585,886 + CCNA_03420 0.10 +0.5 3,585,886 + CCNA_03420 0.10 -0.7 3,585,886 + CCNA_03420 0.10 +0.0 3,585,886 + CCNA_03420 0.10 +0.5 3,585,886 + CCNA_03420 0.10 +0.1 3,585,891 + CCNA_03420 0.11 +0.5 3,585,891 + CCNA_03420 0.11 -0.7 3,585,891 + CCNA_03420 0.11 -0.2 3,585,951 + CCNA_03420 0.21 +0.3 3,586,027 + CCNA_03420 0.34 +0.1 3,586,054 + CCNA_03420 0.38 +0.4 3,586,056 + CCNA_03420 0.38 -0.2 3,586,085 + CCNA_03420 0.43 -0.1 3,586,269 - CCNA_03420 0.74 -0.3 3,586,273 + CCNA_03420 0.74 +0.1 3,586,371 + +0.4 3,586,420 + -0.1 3,586,428 - -1.3 3,586,428 - -0.9 3,586,428 - -1.0 3,586,469 - +0.3 3,586,495 - +0.7 3,586,549 - +0.2 3,586,570 + -0.7 3,586,578 - +0.5 3,586,587 + -2.0 3,586,587 + +0.1 3,586,595 - -0.4 3,586,597 + -0.7 3,586,606 - +0.2 3,586,618 - +0.2 3,586,636 - +0.0 3,586,647 + +0.2 3,586,648 + -1.7 3,586,684 + CCNA_03421 0.11 +0.8 3,586,753 + CCNA_03421 0.16 +0.5 3,586,754 - CCNA_03421 0.16 +0.1 3,586,772 - CCNA_03421 0.17 +0.3 3,586,776 - CCNA_03421 0.18 +0.2 3,586,812 - CCNA_03421 0.20 -0.5
Or see this region's nucleotide sequence