Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02996 and CCNA_02997 are separated by 132 nucleotides CCNA_02997 and CCNA_03904 are separated by 352 nucleotides CCNA_03904 and CCNA_02999 are separated by 163 nucleotides
CCNA_02996: CCNA_02996 - patatin family phospholipase domain protein, at 3,151,281 to 3,152,474
_02996
CCNA_02997: CCNA_02997 - cold shock protein CspA, at 3,152,607 to 3,152,816
_02997
CCNA_03904: CCNA_03904 - hypothetical protein, at 3,153,169 to 3,153,333
_03904
CCNA_02999: CCNA_02999 - hypothetical protein, at 3,153,497 to 3,154,282
_02999
Position (kb)
3152
3153 Strain fitness (log2 ratio)
-2
-1
0
1 at 3151.637 kb on - strand, within CCNA_02996 at 3151.660 kb on + strand, within CCNA_02996 at 3151.670 kb on + strand, within CCNA_02996 at 3151.694 kb on - strand, within CCNA_02996 at 3151.699 kb on + strand, within CCNA_02996 at 3151.699 kb on + strand, within CCNA_02996 at 3151.758 kb on + strand, within CCNA_02996 at 3151.820 kb on - strand, within CCNA_02996 at 3151.867 kb on - strand, within CCNA_02996 at 3151.876 kb on + strand, within CCNA_02996 at 3151.878 kb on - strand, within CCNA_02996 at 3151.899 kb on + strand, within CCNA_02996 at 3151.941 kb on - strand, within CCNA_02996 at 3151.957 kb on + strand, within CCNA_02996 at 3151.962 kb on + strand, within CCNA_02996 at 3151.993 kb on + strand, within CCNA_02996 at 3152.011 kb on - strand, within CCNA_02996 at 3152.034 kb on + strand, within CCNA_02996 at 3152.039 kb on + strand, within CCNA_02996 at 3152.039 kb on + strand, within CCNA_02996 at 3152.083 kb on + strand, within CCNA_02996 at 3152.083 kb on + strand, within CCNA_02996 at 3152.091 kb on - strand, within CCNA_02996 at 3152.103 kb on - strand, within CCNA_02996 at 3152.106 kb on + strand, within CCNA_02996 at 3152.114 kb on - strand, within CCNA_02996 at 3152.115 kb on - strand, within CCNA_02996 at 3152.115 kb on - strand, within CCNA_02996 at 3152.127 kb on + strand, within CCNA_02996 at 3152.205 kb on - strand, within CCNA_02996 at 3152.224 kb on + strand, within CCNA_02996 at 3152.232 kb on - strand, within CCNA_02996 at 3152.233 kb on - strand, within CCNA_02996 at 3152.242 kb on - strand, within CCNA_02996 at 3152.262 kb on + strand, within CCNA_02996 at 3152.272 kb on - strand, within CCNA_02996 at 3152.289 kb on + strand, within CCNA_02996 at 3152.297 kb on - strand, within CCNA_02996 at 3152.297 kb on - strand, within CCNA_02996 at 3152.308 kb on + strand, within CCNA_02996 at 3152.310 kb on + strand, within CCNA_02996 at 3152.318 kb on - strand, within CCNA_02996 at 3152.318 kb on - strand, within CCNA_02996 at 3152.335 kb on + strand, within CCNA_02996 at 3152.343 kb on - strand, within CCNA_02996 at 3152.343 kb on - strand, within CCNA_02996 at 3152.397 kb on + strand at 3152.416 kb on - strand at 3152.429 kb on + strand at 3152.429 kb on + strand at 3152.429 kb on + strand at 3152.429 kb on + strand at 3152.437 kb on - strand at 3152.437 kb on - strand at 3152.437 kb on - strand at 3152.437 kb on - strand at 3152.437 kb on - strand at 3152.437 kb on - strand at 3152.530 kb on + strand at 3152.541 kb on + strand at 3152.549 kb on - strand at 3152.586 kb on + strand at 3152.604 kb on + strand at 3152.613 kb on - strand at 3152.676 kb on + strand, within CCNA_02997 at 3152.676 kb on + strand, within CCNA_02997 at 3152.684 kb on - strand, within CCNA_02997 at 3152.684 kb on - strand, within CCNA_02997 at 3152.697 kb on + strand, within CCNA_02997 at 3152.705 kb on - strand, within CCNA_02997 at 3152.705 kb on - strand, within CCNA_02997 at 3152.705 kb on - strand, within CCNA_02997 at 3152.705 kb on - strand, within CCNA_02997 at 3152.769 kb on + strand, within CCNA_02997 at 3152.777 kb on + strand, within CCNA_02997 at 3152.783 kb on - strand, within CCNA_02997 at 3152.785 kb on - strand, within CCNA_02997 at 3153.081 kb on + strand at 3153.081 kb on + strand at 3153.084 kb on - strand at 3153.084 kb on - strand at 3153.084 kb on - strand at 3153.089 kb on - strand at 3153.107 kb on + strand at 3153.115 kb on - strand at 3153.129 kb on - strand at 3153.217 kb on + strand, within CCNA_03904 at 3153.280 kb on + strand, within CCNA_03904 at 3153.365 kb on - strand at 3153.482 kb on - strand at 3153.487 kb on + strand at 3153.487 kb on + strand at 3153.489 kb on + strand at 3153.495 kb on - strand at 3153.507 kb on + strand at 3153.512 kb on + strand at 3153.512 kb on + strand at 3153.546 kb on + strand at 3153.546 kb on + strand at 3153.554 kb on - strand at 3153.554 kb on - strand at 3153.564 kb on - strand at 3153.642 kb on - strand, within CCNA_02999 at 3153.660 kb on + strand, within CCNA_02999 at 3153.700 kb on + strand, within CCNA_02999 at 3153.713 kb on + strand, within CCNA_02999 at 3153.786 kb on + strand, within CCNA_02999 at 3153.786 kb on + strand, within CCNA_02999
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 3,151,637 - CCNA_02996 0.30 -1.5 3,151,660 + CCNA_02996 0.32 -1.2 3,151,670 + CCNA_02996 0.33 -0.5 3,151,694 - CCNA_02996 0.35 +0.3 3,151,699 + CCNA_02996 0.35 +0.8 3,151,699 + CCNA_02996 0.35 -1.9 3,151,758 + CCNA_02996 0.40 +0.7 3,151,820 - CCNA_02996 0.45 -1.4 3,151,867 - CCNA_02996 0.49 -1.4 3,151,876 + CCNA_02996 0.50 -0.7 3,151,878 - CCNA_02996 0.50 +0.6 3,151,899 + CCNA_02996 0.52 +0.2 3,151,941 - CCNA_02996 0.55 +0.1 3,151,957 + CCNA_02996 0.57 +0.9 3,151,962 + CCNA_02996 0.57 +0.4 3,151,993 + CCNA_02996 0.60 -0.8 3,152,011 - CCNA_02996 0.61 -0.4 3,152,034 + CCNA_02996 0.63 -0.3 3,152,039 + CCNA_02996 0.63 +0.2 3,152,039 + CCNA_02996 0.63 -0.3 3,152,083 + CCNA_02996 0.67 -0.1 3,152,083 + CCNA_02996 0.67 +0.0 3,152,091 - CCNA_02996 0.68 +0.3 3,152,103 - CCNA_02996 0.69 -1.6 3,152,106 + CCNA_02996 0.69 -0.9 3,152,114 - CCNA_02996 0.70 +0.7 3,152,115 - CCNA_02996 0.70 -0.0 3,152,115 - CCNA_02996 0.70 +1.6 3,152,127 + CCNA_02996 0.71 -0.2 3,152,205 - CCNA_02996 0.77 -0.3 3,152,224 + CCNA_02996 0.79 +0.5 3,152,232 - CCNA_02996 0.80 -1.7 3,152,233 - CCNA_02996 0.80 -0.5 3,152,242 - CCNA_02996 0.80 +0.1 3,152,262 + CCNA_02996 0.82 -0.4 3,152,272 - CCNA_02996 0.83 -1.4 3,152,289 + CCNA_02996 0.84 -0.4 3,152,297 - CCNA_02996 0.85 -0.3 3,152,297 - CCNA_02996 0.85 -0.3 3,152,308 + CCNA_02996 0.86 -1.0 3,152,310 + CCNA_02996 0.86 +0.2 3,152,318 - CCNA_02996 0.87 -0.1 3,152,318 - CCNA_02996 0.87 -0.4 3,152,335 + CCNA_02996 0.88 -0.2 3,152,343 - CCNA_02996 0.89 +0.3 3,152,343 - CCNA_02996 0.89 -0.6 3,152,397 + +0.0 3,152,416 - -0.4 3,152,429 + -0.1 3,152,429 + -0.6 3,152,429 + -0.1 3,152,429 + -0.2 3,152,437 - +0.2 3,152,437 - -0.3 3,152,437 - -0.4 3,152,437 - -0.3 3,152,437 - +0.3 3,152,437 - +1.0 3,152,530 + +1.6 3,152,541 + +1.7 3,152,549 - -1.2 3,152,586 + +0.0 3,152,604 + +0.2 3,152,613 - +0.5 3,152,676 + CCNA_02997 0.33 -1.1 3,152,676 + CCNA_02997 0.33 -0.3 3,152,684 - CCNA_02997 0.37 +1.2 3,152,684 - CCNA_02997 0.37 +0.6 3,152,697 + CCNA_02997 0.43 -0.2 3,152,705 - CCNA_02997 0.47 -0.1 3,152,705 - CCNA_02997 0.47 +0.1 3,152,705 - CCNA_02997 0.47 -0.3 3,152,705 - CCNA_02997 0.47 +0.9 3,152,769 + CCNA_02997 0.77 -1.2 3,152,777 + CCNA_02997 0.81 -0.8 3,152,783 - CCNA_02997 0.84 +0.4 3,152,785 - CCNA_02997 0.85 +0.4 3,153,081 + -0.6 3,153,081 + -0.2 3,153,084 - -0.7 3,153,084 - +0.3 3,153,084 - -0.1 3,153,089 - -0.3 3,153,107 + +0.4 3,153,115 - +0.6 3,153,129 - -1.6 3,153,217 + CCNA_03904 0.29 +0.3 3,153,280 + CCNA_03904 0.67 +0.4 3,153,365 - +0.9 3,153,482 - +0.1 3,153,487 + +0.2 3,153,487 + +0.4 3,153,489 + +0.8 3,153,495 - -0.3 3,153,507 + +0.0 3,153,512 + +0.1 3,153,512 + +0.6 3,153,546 + +0.5 3,153,546 + +0.4 3,153,554 - +0.0 3,153,554 - +0.6 3,153,564 - +0.0 3,153,642 - CCNA_02999 0.18 -0.3 3,153,660 + CCNA_02999 0.21 +0.1 3,153,700 + CCNA_02999 0.26 +0.6 3,153,713 + CCNA_02999 0.27 +0.6 3,153,786 + CCNA_02999 0.37 +0.0 3,153,786 + CCNA_02999 0.37 +0.5
Or see this region's nucleotide sequence