Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02935 and CCNA_02936 are separated by 103 nucleotides CCNA_02936 and CCNA_02937 are separated by 102 nucleotides CCNA_02937 and CCNA_02938 overlap by 4 nucleotides CCNA_02938 and CCNA_02939 are separated by 156 nucleotides
CCNA_02935: CCNA_02935 - methyl-accepting chemotaxis protein, at 3,094,958 to 3,097,171
_02935
CCNA_02936: CCNA_02936 - glutathione S-transferase, at 3,097,275 to 3,097,937
_02936
CCNA_02937: CCNA_02937 - hypothetical protein, at 3,098,040 to 3,098,702
_02937
CCNA_02938: CCNA_02938 - outer membrane protein A, at 3,098,699 to 3,099,274
_02938
CCNA_02939: CCNA_02939 - hypothetical protein, at 3,099,431 to 3,099,787
_02939
Position (kb)
3098
3099 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3097.045 kb on - strand at 3097.045 kb on - strand at 3097.045 kb on - strand at 3097.045 kb on - strand at 3097.066 kb on - strand at 3097.080 kb on - strand at 3097.083 kb on + strand at 3097.091 kb on - strand at 3097.168 kb on - strand at 3097.246 kb on - strand at 3097.248 kb on - strand at 3097.253 kb on + strand at 3097.253 kb on + strand at 3097.269 kb on + strand at 3097.328 kb on - strand at 3097.354 kb on - strand, within CCNA_02936 at 3097.377 kb on + strand, within CCNA_02936 at 3097.403 kb on + strand, within CCNA_02936 at 3097.403 kb on + strand, within CCNA_02936 at 3097.463 kb on + strand, within CCNA_02936 at 3097.476 kb on - strand, within CCNA_02936 at 3097.492 kb on - strand, within CCNA_02936 at 3097.514 kb on - strand, within CCNA_02936 at 3097.520 kb on - strand, within CCNA_02936 at 3097.537 kb on + strand, within CCNA_02936 at 3097.550 kb on + strand, within CCNA_02936 at 3097.611 kb on - strand, within CCNA_02936 at 3097.621 kb on - strand, within CCNA_02936 at 3097.624 kb on - strand, within CCNA_02936 at 3097.626 kb on - strand, within CCNA_02936 at 3097.717 kb on + strand, within CCNA_02936 at 3097.717 kb on - strand, within CCNA_02936 at 3097.717 kb on - strand, within CCNA_02936 at 3097.723 kb on - strand, within CCNA_02936 at 3097.768 kb on + strand, within CCNA_02936 at 3097.773 kb on + strand, within CCNA_02936 at 3097.773 kb on + strand, within CCNA_02936 at 3097.773 kb on + strand, within CCNA_02936 at 3097.794 kb on + strand, within CCNA_02936 at 3097.801 kb on - strand, within CCNA_02936 at 3097.816 kb on + strand, within CCNA_02936 at 3097.852 kb on + strand, within CCNA_02936 at 3097.852 kb on + strand, within CCNA_02936 at 3097.853 kb on + strand, within CCNA_02936 at 3097.878 kb on - strand at 3097.920 kb on + strand at 3097.926 kb on + strand at 3097.928 kb on - strand at 3097.941 kb on - strand at 3097.960 kb on + strand at 3097.960 kb on + strand at 3097.968 kb on - strand at 3097.972 kb on + strand at 3097.977 kb on + strand at 3097.977 kb on + strand at 3097.982 kb on + strand at 3097.982 kb on + strand at 3097.982 kb on + strand at 3097.982 kb on + strand at 3097.990 kb on - strand at 3097.990 kb on - strand at 3098.067 kb on + strand at 3098.082 kb on + strand at 3098.150 kb on - strand, within CCNA_02937 at 3098.161 kb on - strand, within CCNA_02937 at 3098.238 kb on - strand, within CCNA_02937 at 3098.250 kb on + strand, within CCNA_02937 at 3098.257 kb on + strand, within CCNA_02937 at 3098.276 kb on - strand, within CCNA_02937 at 3098.311 kb on + strand, within CCNA_02937 at 3098.313 kb on - strand, within CCNA_02937 at 3098.343 kb on - strand, within CCNA_02937 at 3098.351 kb on - strand, within CCNA_02937 at 3098.389 kb on + strand, within CCNA_02937 at 3098.397 kb on - strand, within CCNA_02937 at 3098.397 kb on - strand, within CCNA_02937 at 3098.402 kb on - strand, within CCNA_02937 at 3098.429 kb on + strand, within CCNA_02937 at 3098.438 kb on + strand, within CCNA_02937 at 3098.438 kb on + strand, within CCNA_02937 at 3098.438 kb on + strand, within CCNA_02937 at 3098.446 kb on - strand, within CCNA_02937 at 3098.446 kb on - strand, within CCNA_02937 at 3098.446 kb on - strand, within CCNA_02937 at 3098.470 kb on - strand, within CCNA_02937 at 3098.513 kb on + strand, within CCNA_02937 at 3098.516 kb on - strand, within CCNA_02937 at 3098.519 kb on + strand, within CCNA_02937 at 3098.556 kb on + strand, within CCNA_02937 at 3098.558 kb on - strand, within CCNA_02937 at 3098.603 kb on - strand, within CCNA_02937 at 3098.632 kb on + strand, within CCNA_02937 at 3098.663 kb on - strand at 3098.713 kb on - strand at 3098.724 kb on + strand at 3098.724 kb on + strand at 3098.732 kb on - strand at 3098.772 kb on - strand, within CCNA_02938 at 3098.794 kb on + strand, within CCNA_02938 at 3098.825 kb on - strand, within CCNA_02938 at 3098.863 kb on + strand, within CCNA_02938 at 3098.877 kb on - strand, within CCNA_02938 at 3098.887 kb on + strand, within CCNA_02938 at 3098.935 kb on - strand, within CCNA_02938 at 3098.942 kb on - strand, within CCNA_02938 at 3098.942 kb on - strand, within CCNA_02938 at 3098.949 kb on + strand, within CCNA_02938 at 3098.994 kb on - strand, within CCNA_02938 at 3099.031 kb on - strand, within CCNA_02938 at 3099.059 kb on + strand, within CCNA_02938 at 3099.060 kb on - strand, within CCNA_02938 at 3099.143 kb on - strand, within CCNA_02938 at 3099.145 kb on + strand, within CCNA_02938 at 3099.145 kb on + strand, within CCNA_02938 at 3099.164 kb on + strand, within CCNA_02938 at 3099.172 kb on - strand, within CCNA_02938 at 3099.269 kb on - strand at 3099.275 kb on + strand at 3099.277 kb on + strand at 3099.285 kb on - strand at 3099.285 kb on - strand at 3099.295 kb on + strand at 3099.309 kb on + strand at 3099.310 kb on + strand at 3099.311 kb on + strand at 3099.319 kb on - strand at 3099.319 kb on - strand at 3099.319 kb on - strand at 3099.363 kb on - strand at 3099.379 kb on + strand at 3099.410 kb on + strand at 3099.433 kb on - strand at 3099.450 kb on - strand at 3099.501 kb on + strand, within CCNA_02939 at 3099.503 kb on - strand, within CCNA_02939 at 3099.514 kb on - strand, within CCNA_02939 at 3099.583 kb on - strand, within CCNA_02939 at 3099.593 kb on - strand, within CCNA_02939 at 3099.602 kb on - strand, within CCNA_02939 at 3099.668 kb on - strand, within CCNA_02939 at 3099.691 kb on + strand, within CCNA_02939 at 3099.695 kb on - strand, within CCNA_02939 at 3099.699 kb on - strand, within CCNA_02939 at 3099.699 kb on - strand, within CCNA_02939
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 3,097,045 - +1.0 3,097,045 - +0.2 3,097,045 - +0.2 3,097,045 - +0.9 3,097,066 - -0.0 3,097,080 - +0.1 3,097,083 + -1.1 3,097,091 - -0.2 3,097,168 - -0.3 3,097,246 - -1.3 3,097,248 - -1.7 3,097,253 + -0.6 3,097,253 + +1.2 3,097,269 + -1.1 3,097,328 - -0.1 3,097,354 - CCNA_02936 0.12 +0.4 3,097,377 + CCNA_02936 0.15 -0.6 3,097,403 + CCNA_02936 0.19 -0.4 3,097,403 + CCNA_02936 0.19 -0.6 3,097,463 + CCNA_02936 0.28 -0.6 3,097,476 - CCNA_02936 0.30 +0.6 3,097,492 - CCNA_02936 0.33 -0.4 3,097,514 - CCNA_02936 0.36 +0.2 3,097,520 - CCNA_02936 0.37 -0.0 3,097,537 + CCNA_02936 0.40 +0.6 3,097,550 + CCNA_02936 0.41 -0.1 3,097,611 - CCNA_02936 0.51 +0.9 3,097,621 - CCNA_02936 0.52 -0.7 3,097,624 - CCNA_02936 0.53 +0.1 3,097,626 - CCNA_02936 0.53 -0.4 3,097,717 + CCNA_02936 0.67 -0.7 3,097,717 - CCNA_02936 0.67 -0.2 3,097,717 - CCNA_02936 0.67 -0.1 3,097,723 - CCNA_02936 0.68 +0.6 3,097,768 + CCNA_02936 0.74 -1.6 3,097,773 + CCNA_02936 0.75 +0.6 3,097,773 + CCNA_02936 0.75 +0.4 3,097,773 + CCNA_02936 0.75 -2.6 3,097,794 + CCNA_02936 0.78 +0.1 3,097,801 - CCNA_02936 0.79 -1.7 3,097,816 + CCNA_02936 0.82 +0.1 3,097,852 + CCNA_02936 0.87 -0.1 3,097,852 + CCNA_02936 0.87 +0.4 3,097,853 + CCNA_02936 0.87 +0.5 3,097,878 - -0.3 3,097,920 + +1.1 3,097,926 + -0.5 3,097,928 - -1.5 3,097,941 - -1.6 3,097,960 + -0.3 3,097,960 + -0.8 3,097,968 - -2.1 3,097,972 + +0.6 3,097,977 + -0.3 3,097,977 + -0.1 3,097,982 + -0.8 3,097,982 + -0.3 3,097,982 + +2.1 3,097,982 + -0.1 3,097,990 - -0.5 3,097,990 - -0.6 3,098,067 + -0.8 3,098,082 + +0.4 3,098,150 - CCNA_02937 0.17 -0.8 3,098,161 - CCNA_02937 0.18 -2.9 3,098,238 - CCNA_02937 0.30 -2.2 3,098,250 + CCNA_02937 0.32 -0.4 3,098,257 + CCNA_02937 0.33 -0.3 3,098,276 - CCNA_02937 0.36 -1.8 3,098,311 + CCNA_02937 0.41 -0.4 3,098,313 - CCNA_02937 0.41 -0.7 3,098,343 - CCNA_02937 0.46 -1.9 3,098,351 - CCNA_02937 0.47 -1.2 3,098,389 + CCNA_02937 0.53 -2.3 3,098,397 - CCNA_02937 0.54 -1.0 3,098,397 - CCNA_02937 0.54 -0.6 3,098,402 - CCNA_02937 0.55 -1.6 3,098,429 + CCNA_02937 0.59 +0.2 3,098,438 + CCNA_02937 0.60 -1.3 3,098,438 + CCNA_02937 0.60 -0.9 3,098,438 + CCNA_02937 0.60 -2.5 3,098,446 - CCNA_02937 0.61 +0.3 3,098,446 - CCNA_02937 0.61 -0.5 3,098,446 - CCNA_02937 0.61 -1.4 3,098,470 - CCNA_02937 0.65 -1.2 3,098,513 + CCNA_02937 0.71 -1.8 3,098,516 - CCNA_02937 0.72 -0.4 3,098,519 + CCNA_02937 0.72 -0.1 3,098,556 + CCNA_02937 0.78 +1.1 3,098,558 - CCNA_02937 0.78 +0.2 3,098,603 - CCNA_02937 0.85 +0.8 3,098,632 + CCNA_02937 0.89 -0.1 3,098,663 - -0.1 3,098,713 - +0.3 3,098,724 + -1.4 3,098,724 + -1.0 3,098,732 - +0.0 3,098,772 - CCNA_02938 0.13 +0.8 3,098,794 + CCNA_02938 0.16 +0.5 3,098,825 - CCNA_02938 0.22 -0.6 3,098,863 + CCNA_02938 0.28 -0.6 3,098,877 - CCNA_02938 0.31 +0.5 3,098,887 + CCNA_02938 0.33 -0.4 3,098,935 - CCNA_02938 0.41 -0.8 3,098,942 - CCNA_02938 0.42 -1.2 3,098,942 - CCNA_02938 0.42 -0.4 3,098,949 + CCNA_02938 0.43 +0.8 3,098,994 - CCNA_02938 0.51 +0.2 3,099,031 - CCNA_02938 0.58 +0.3 3,099,059 + CCNA_02938 0.62 +0.6 3,099,060 - CCNA_02938 0.63 -2.1 3,099,143 - CCNA_02938 0.77 +0.9 3,099,145 + CCNA_02938 0.77 +0.4 3,099,145 + CCNA_02938 0.77 +0.3 3,099,164 + CCNA_02938 0.81 -0.1 3,099,172 - CCNA_02938 0.82 -1.6 3,099,269 - -1.4 3,099,275 + +0.0 3,099,277 + +0.3 3,099,285 - -0.7 3,099,285 - -0.4 3,099,295 + -0.0 3,099,309 + -1.1 3,099,310 + -0.9 3,099,311 + +1.6 3,099,319 - -0.2 3,099,319 - +0.7 3,099,319 - -1.6 3,099,363 - +0.1 3,099,379 + -0.3 3,099,410 + -0.1 3,099,433 - +0.4 3,099,450 - -1.1 3,099,501 + CCNA_02939 0.20 +0.0 3,099,503 - CCNA_02939 0.20 +0.2 3,099,514 - CCNA_02939 0.23 -0.5 3,099,583 - CCNA_02939 0.43 +0.0 3,099,593 - CCNA_02939 0.45 -0.5 3,099,602 - CCNA_02939 0.48 -1.2 3,099,668 - CCNA_02939 0.66 -0.0 3,099,691 + CCNA_02939 0.73 +0.8 3,099,695 - CCNA_02939 0.74 -0.5 3,099,699 - CCNA_02939 0.75 -0.7 3,099,699 - CCNA_02939 0.75 +0.7
Or see this region's nucleotide sequence