Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02926

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02925 and CCNA_02926 are separated by 279 nucleotidesCCNA_02926 and CCNA_02927 are separated by 148 nucleotides CCNA_02925: CCNA_02925 - carbamoyl-phosphate synthase small chain, at 3,086,931 to 3,088,097 _02925 CCNA_02926: CCNA_02926 - hypothetical protein, at 3,088,377 to 3,088,547 _02926 CCNA_02927: CCNA_02927 - short chain dehydrogenase, at 3,088,696 to 3,089,433 _02927 Position (kb) 3088 3089Strain fitness (log2 ratio) -1 0 1 2at 3087.410 kb on + strand, within CCNA_02925at 3087.412 kb on - strand, within CCNA_02925at 3087.429 kb on + strand, within CCNA_02925at 3087.430 kb on + strand, within CCNA_02925at 3087.440 kb on + strand, within CCNA_02925at 3087.449 kb on + strand, within CCNA_02925at 3087.459 kb on + strand, within CCNA_02925at 3087.584 kb on + strand, within CCNA_02925at 3087.669 kb on - strand, within CCNA_02925at 3087.873 kb on + strand, within CCNA_02925at 3087.913 kb on + strand, within CCNA_02925at 3088.098 kb on + strandat 3088.155 kb on + strandat 3088.155 kb on + strandat 3088.163 kb on - strandat 3088.176 kb on - strandat 3088.200 kb on + strandat 3088.220 kb on - strandat 3088.228 kb on - strandat 3088.280 kb on + strandat 3088.280 kb on + strandat 3088.288 kb on - strandat 3088.288 kb on - strandat 3088.301 kb on + strandat 3088.312 kb on + strandat 3088.320 kb on - strandat 3088.320 kb on - strandat 3088.320 kb on - strandat 3088.324 kb on + strandat 3088.329 kb on + strandat 3088.332 kb on - strandat 3088.332 kb on - strandat 3088.351 kb on - strandat 3088.360 kb on + strandat 3088.361 kb on + strandat 3088.361 kb on + strandat 3088.369 kb on - strandat 3088.410 kb on + strand, within CCNA_02926at 3088.418 kb on - strand, within CCNA_02926at 3088.437 kb on + strand, within CCNA_02926at 3088.437 kb on + strand, within CCNA_02926at 3088.445 kb on - strand, within CCNA_02926at 3088.536 kb on + strandat 3088.589 kb on + strandat 3088.616 kb on + strandat 3088.616 kb on + strandat 3088.616 kb on + strandat 3088.616 kb on + strandat 3088.622 kb on - strandat 3088.624 kb on - strandat 3088.624 kb on - strandat 3088.649 kb on + strandat 3088.649 kb on + strandat 3088.649 kb on + strandat 3088.649 kb on + strandat 3088.657 kb on - strandat 3088.664 kb on + strandat 3088.672 kb on - strandat 3088.724 kb on + strandat 3088.724 kb on + strandat 3088.753 kb on - strandat 3088.759 kb on + strandat 3088.778 kb on + strand, within CCNA_02927at 3088.814 kb on - strand, within CCNA_02927at 3088.815 kb on - strand, within CCNA_02927at 3088.821 kb on + strand, within CCNA_02927at 3088.874 kb on + strand, within CCNA_02927at 3088.892 kb on - strand, within CCNA_02927at 3088.935 kb on - strand, within CCNA_02927at 3088.945 kb on - strand, within CCNA_02927at 3088.945 kb on - strand, within CCNA_02927at 3088.946 kb on + strand, within CCNA_02927at 3088.954 kb on - strand, within CCNA_02927at 3088.956 kb on + strand, within CCNA_02927at 3088.956 kb on + strand, within CCNA_02927at 3088.959 kb on - strand, within CCNA_02927at 3088.964 kb on - strand, within CCNA_02927at 3088.970 kb on - strand, within CCNA_02927at 3088.970 kb on - strand, within CCNA_02927at 3089.036 kb on + strand, within CCNA_02927at 3089.056 kb on - strand, within CCNA_02927at 3089.058 kb on + strand, within CCNA_02927at 3089.058 kb on + strand, within CCNA_02927at 3089.066 kb on - strand, within CCNA_02927at 3089.080 kb on + strand, within CCNA_02927at 3089.137 kb on + strand, within CCNA_02927at 3089.154 kb on + strand, within CCNA_02927at 3089.154 kb on + strand, within CCNA_02927at 3089.162 kb on - strand, within CCNA_02927at 3089.178 kb on + strand, within CCNA_02927at 3089.178 kb on + strand, within CCNA_02927at 3089.186 kb on - strand, within CCNA_02927at 3089.186 kb on - strand, within CCNA_02927at 3089.186 kb on - strand, within CCNA_02927at 3089.196 kb on + strand, within CCNA_02927at 3089.197 kb on + strand, within CCNA_02927at 3089.204 kb on - strand, within CCNA_02927at 3089.204 kb on - strand, within CCNA_02927at 3089.213 kb on - strand, within CCNA_02927at 3089.213 kb on - strand, within CCNA_02927at 3089.220 kb on + strand, within CCNA_02927at 3089.228 kb on - strand, within CCNA_02927at 3089.252 kb on - strand, within CCNA_02927at 3089.252 kb on - strand, within CCNA_02927at 3089.263 kb on - strand, within CCNA_02927at 3089.265 kb on + strand, within CCNA_02927at 3089.270 kb on + strand, within CCNA_02927at 3089.278 kb on - strand, within CCNA_02927at 3089.361 kb on + strandat 3089.361 kb on + strandat 3089.403 kb on - strandat 3089.458 kb on + strandat 3089.488 kb on + strandat 3089.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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3,087,410 + CCNA_02925 0.41 -0.2
3,087,412 - CCNA_02925 0.41 +0.0
3,087,429 + CCNA_02925 0.43 +1.0
3,087,430 + CCNA_02925 0.43 -0.6
3,087,440 + CCNA_02925 0.44 +0.6
3,087,449 + CCNA_02925 0.44 +0.0
3,087,459 + CCNA_02925 0.45 +0.4
3,087,584 + CCNA_02925 0.56 -0.1
3,087,669 - CCNA_02925 0.63 +0.0
3,087,873 + CCNA_02925 0.81 -0.5
3,087,913 + CCNA_02925 0.84 +1.6
3,088,098 + +0.4
3,088,155 + +0.8
3,088,155 + +0.1
3,088,163 - +0.4
3,088,176 - -0.5
3,088,200 + -0.7
3,088,220 - -0.9
3,088,228 - +0.7
3,088,280 + +0.2
3,088,280 + +1.3
3,088,288 - +2.1
3,088,288 - -0.4
3,088,301 + +0.5
3,088,312 + +0.3
3,088,320 - -0.3
3,088,320 - -0.4
3,088,320 - -0.5
3,088,324 + +0.8
3,088,329 + +0.7
3,088,332 - -0.5
3,088,332 - +0.1
3,088,351 - -0.9
3,088,360 + -0.2
3,088,361 + +0.1
3,088,361 + -0.8
3,088,369 - -1.2
3,088,410 + CCNA_02926 0.19 +0.3
3,088,418 - CCNA_02926 0.24 -0.7
3,088,437 + CCNA_02926 0.35 -0.7
3,088,437 + CCNA_02926 0.35 -1.2
3,088,445 - CCNA_02926 0.40 -1.1
3,088,536 + +0.3
3,088,589 + +0.4
3,088,616 + -0.4
3,088,616 + -0.3
3,088,616 + +1.2
3,088,616 + -0.1
3,088,622 - +0.3
3,088,624 - -0.4
3,088,624 - -0.6
3,088,649 + +0.6
3,088,649 + +0.4
3,088,649 + +0.4
3,088,649 + +0.8
3,088,657 - +0.2
3,088,664 + -0.1
3,088,672 - +1.4
3,088,724 + +0.9
3,088,724 + -0.4
3,088,753 - -0.2
3,088,759 + +0.4
3,088,778 + CCNA_02927 0.11 -0.1
3,088,814 - CCNA_02927 0.16 +0.4
3,088,815 - CCNA_02927 0.16 +0.0
3,088,821 + CCNA_02927 0.17 +0.4
3,088,874 + CCNA_02927 0.24 +0.5
3,088,892 - CCNA_02927 0.27 +0.5
3,088,935 - CCNA_02927 0.32 -0.2
3,088,945 - CCNA_02927 0.34 -0.4
3,088,945 - CCNA_02927 0.34 -0.1
3,088,946 + CCNA_02927 0.34 +0.7
3,088,954 - CCNA_02927 0.35 -0.6
3,088,956 + CCNA_02927 0.35 -1.1
3,088,956 + CCNA_02927 0.35 +0.3
3,088,959 - CCNA_02927 0.36 -0.0
3,088,964 - CCNA_02927 0.36 +0.8
3,088,970 - CCNA_02927 0.37 +0.8
3,088,970 - CCNA_02927 0.37 +0.5
3,089,036 + CCNA_02927 0.46 +0.5
3,089,056 - CCNA_02927 0.49 +1.2
3,089,058 + CCNA_02927 0.49 -0.6
3,089,058 + CCNA_02927 0.49 -1.2
3,089,066 - CCNA_02927 0.50 -0.3
3,089,080 + CCNA_02927 0.52 -0.5
3,089,137 + CCNA_02927 0.60 -1.2
3,089,154 + CCNA_02927 0.62 +0.7
3,089,154 + CCNA_02927 0.62 +0.4
3,089,162 - CCNA_02927 0.63 -0.2
3,089,178 + CCNA_02927 0.65 -0.1
3,089,178 + CCNA_02927 0.65 +0.2
3,089,186 - CCNA_02927 0.66 -0.5
3,089,186 - CCNA_02927 0.66 -1.7
3,089,186 - CCNA_02927 0.66 +0.9
3,089,196 + CCNA_02927 0.68 +0.1
3,089,197 + CCNA_02927 0.68 -0.5
3,089,204 - CCNA_02927 0.69 -1.4
3,089,204 - CCNA_02927 0.69 -0.8
3,089,213 - CCNA_02927 0.70 -1.1
3,089,213 - CCNA_02927 0.70 +0.4
3,089,220 + CCNA_02927 0.71 -0.7
3,089,228 - CCNA_02927 0.72 +1.2
3,089,252 - CCNA_02927 0.75 -0.7
3,089,252 - CCNA_02927 0.75 -0.3
3,089,263 - CCNA_02927 0.77 +0.5
3,089,265 + CCNA_02927 0.77 -0.2
3,089,270 + CCNA_02927 0.78 +0.0
3,089,278 - CCNA_02927 0.79 +0.1
3,089,361 + +0.0
3,089,361 + -0.7
3,089,403 - +1.1
3,089,458 + +0.2
3,089,488 + +0.5
3,089,535 - -0.0

Or see this region's nucleotide sequence