Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02921 and CCNA_02922 are separated by 7 nucleotides CCNA_02922 and CCNA_02923 are separated by 302 nucleotides
CCNA_02921: CCNA_02921 - hypothetical protein, at 3,080,587 to 3,082,311
_02921
CCNA_02922: CCNA_02922 - hypothetical protein, at 3,082,319 to 3,082,462
_02922
CCNA_02923: CCNA_02923 - TonB-dependent receptor, at 3,082,765 to 3,085,839
_02923
Position (kb)
3082
3083 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3081.375 kb on + strand, within CCNA_02921 at 3081.380 kb on + strand, within CCNA_02921 at 3081.421 kb on + strand, within CCNA_02921 at 3081.442 kb on + strand, within CCNA_02921 at 3081.442 kb on + strand, within CCNA_02921 at 3081.442 kb on + strand, within CCNA_02921 at 3081.450 kb on - strand, within CCNA_02921 at 3081.450 kb on - strand, within CCNA_02921 at 3081.450 kb on - strand, within CCNA_02921 at 3081.450 kb on - strand, within CCNA_02921 at 3081.457 kb on + strand, within CCNA_02921 at 3081.467 kb on + strand, within CCNA_02921 at 3081.503 kb on - strand, within CCNA_02921 at 3081.505 kb on + strand, within CCNA_02921 at 3081.505 kb on + strand, within CCNA_02921 at 3081.513 kb on - strand, within CCNA_02921 at 3081.513 kb on - strand, within CCNA_02921 at 3081.513 kb on - strand, within CCNA_02921 at 3081.513 kb on - strand, within CCNA_02921 at 3081.588 kb on + strand, within CCNA_02921 at 3081.596 kb on - strand, within CCNA_02921 at 3081.639 kb on + strand, within CCNA_02921 at 3081.648 kb on + strand, within CCNA_02921 at 3081.686 kb on - strand, within CCNA_02921 at 3081.720 kb on - strand, within CCNA_02921 at 3081.721 kb on - strand, within CCNA_02921 at 3081.784 kb on + strand, within CCNA_02921 at 3081.815 kb on + strand, within CCNA_02921 at 3081.821 kb on + strand, within CCNA_02921 at 3081.823 kb on - strand, within CCNA_02921 at 3081.828 kb on - strand, within CCNA_02921 at 3081.829 kb on - strand, within CCNA_02921 at 3081.880 kb on + strand, within CCNA_02921 at 3081.880 kb on + strand, within CCNA_02921 at 3081.888 kb on - strand, within CCNA_02921 at 3081.888 kb on - strand, within CCNA_02921 at 3081.888 kb on - strand, within CCNA_02921 at 3081.888 kb on - strand, within CCNA_02921 at 3081.894 kb on - strand, within CCNA_02921 at 3081.894 kb on - strand, within CCNA_02921 at 3081.937 kb on + strand, within CCNA_02921 at 3081.937 kb on + strand, within CCNA_02921 at 3081.937 kb on + strand, within CCNA_02921 at 3081.937 kb on + strand, within CCNA_02921 at 3081.945 kb on - strand, within CCNA_02921 at 3081.945 kb on - strand, within CCNA_02921 at 3081.945 kb on - strand, within CCNA_02921 at 3081.945 kb on - strand, within CCNA_02921 at 3081.945 kb on - strand, within CCNA_02921 at 3082.089 kb on - strand, within CCNA_02921 at 3082.089 kb on - strand, within CCNA_02921 at 3082.179 kb on + strand at 3082.238 kb on + strand at 3082.242 kb on - strand at 3082.242 kb on - strand at 3082.283 kb on + strand at 3082.342 kb on + strand, within CCNA_02922 at 3082.342 kb on + strand, within CCNA_02922 at 3082.342 kb on + strand, within CCNA_02922 at 3082.342 kb on + strand, within CCNA_02922 at 3082.431 kb on - strand, within CCNA_02922 at 3082.500 kb on + strand at 3082.524 kb on + strand at 3082.525 kb on + strand at 3082.533 kb on - strand at 3082.533 kb on - strand at 3082.558 kb on + strand at 3082.558 kb on + strand at 3082.558 kb on + strand at 3082.558 kb on + strand at 3082.566 kb on - strand at 3082.566 kb on - strand at 3082.566 kb on - strand at 3082.566 kb on - strand at 3082.566 kb on - strand at 3082.568 kb on + strand at 3082.568 kb on + strand at 3082.576 kb on - strand at 3082.576 kb on - strand at 3082.591 kb on - strand at 3082.612 kb on + strand at 3082.666 kb on - strand at 3082.671 kb on - strand at 3082.706 kb on + strand at 3082.730 kb on + strand at 3082.738 kb on - strand at 3082.749 kb on + strand at 3082.753 kb on + strand at 3082.753 kb on + strand at 3082.761 kb on - strand at 3082.783 kb on + strand at 3082.788 kb on + strand at 3082.790 kb on - strand at 3082.791 kb on - strand at 3082.796 kb on - strand at 3082.796 kb on - strand at 3082.806 kb on + strand at 3082.813 kb on - strand at 3082.824 kb on - strand at 3082.831 kb on + strand at 3082.857 kb on - strand at 3082.878 kb on + strand at 3082.878 kb on + strand at 3082.886 kb on - strand at 3082.886 kb on - strand at 3082.886 kb on - strand at 3082.886 kb on - strand at 3082.898 kb on + strand at 3082.901 kb on - strand at 3082.906 kb on - strand at 3082.926 kb on + strand at 3082.934 kb on - strand at 3082.934 kb on - strand at 3082.953 kb on + strand at 3082.964 kb on + strand at 3082.964 kb on + strand at 3082.972 kb on - strand at 3082.998 kb on + strand at 3083.006 kb on + strand at 3083.006 kb on + strand at 3083.006 kb on - strand at 3083.044 kb on - strand at 3083.090 kb on - strand, within CCNA_02923 at 3083.100 kb on - strand, within CCNA_02923 at 3083.107 kb on - strand, within CCNA_02923 at 3083.131 kb on + strand, within CCNA_02923 at 3083.134 kb on - strand, within CCNA_02923 at 3083.134 kb on - strand, within CCNA_02923 at 3083.136 kb on + strand, within CCNA_02923 at 3083.144 kb on - strand, within CCNA_02923 at 3083.163 kb on + strand, within CCNA_02923 at 3083.179 kb on - strand, within CCNA_02923 at 3083.199 kb on - strand, within CCNA_02923 at 3083.200 kb on + strand, within CCNA_02923 at 3083.216 kb on - strand, within CCNA_02923 at 3083.284 kb on + strand, within CCNA_02923 at 3083.284 kb on + strand, within CCNA_02923 at 3083.284 kb on + strand, within CCNA_02923 at 3083.325 kb on + strand, within CCNA_02923 at 3083.339 kb on - strand, within CCNA_02923 at 3083.341 kb on + strand, within CCNA_02923 at 3083.341 kb on + strand, within CCNA_02923 at 3083.341 kb on + strand, within CCNA_02923 at 3083.341 kb on + strand, within CCNA_02923 at 3083.349 kb on - strand, within CCNA_02923 at 3083.349 kb on - strand, within CCNA_02923 at 3083.350 kb on - strand, within CCNA_02923 at 3083.351 kb on + strand, within CCNA_02923 at 3083.351 kb on + strand, within CCNA_02923 at 3083.390 kb on + strand, within CCNA_02923 at 3083.395 kb on + strand, within CCNA_02923 at 3083.403 kb on - strand, within CCNA_02923 at 3083.403 kb on - strand, within CCNA_02923 at 3083.403 kb on - strand, within CCNA_02923 at 3083.403 kb on - strand, within CCNA_02923 at 3083.459 kb on + strand, within CCNA_02923
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 3,081,375 + CCNA_02921 0.46 -0.1 3,081,380 + CCNA_02921 0.46 -1.0 3,081,421 + CCNA_02921 0.48 -0.6 3,081,442 + CCNA_02921 0.50 -0.4 3,081,442 + CCNA_02921 0.50 -0.3 3,081,442 + CCNA_02921 0.50 -0.8 3,081,450 - CCNA_02921 0.50 -0.4 3,081,450 - CCNA_02921 0.50 +0.3 3,081,450 - CCNA_02921 0.50 +0.5 3,081,450 - CCNA_02921 0.50 -0.2 3,081,457 + CCNA_02921 0.50 -0.5 3,081,467 + CCNA_02921 0.51 +0.7 3,081,503 - CCNA_02921 0.53 +0.5 3,081,505 + CCNA_02921 0.53 -0.1 3,081,505 + CCNA_02921 0.53 -0.9 3,081,513 - CCNA_02921 0.54 -0.3 3,081,513 - CCNA_02921 0.54 -0.0 3,081,513 - CCNA_02921 0.54 +0.3 3,081,513 - CCNA_02921 0.54 -1.3 3,081,588 + CCNA_02921 0.58 -0.1 3,081,596 - CCNA_02921 0.58 +0.2 3,081,639 + CCNA_02921 0.61 +0.5 3,081,648 + CCNA_02921 0.62 +0.1 3,081,686 - CCNA_02921 0.64 +0.6 3,081,720 - CCNA_02921 0.66 -0.3 3,081,721 - CCNA_02921 0.66 -0.2 3,081,784 + CCNA_02921 0.69 +0.0 3,081,815 + CCNA_02921 0.71 +0.3 3,081,821 + CCNA_02921 0.72 +0.2 3,081,823 - CCNA_02921 0.72 -0.5 3,081,828 - CCNA_02921 0.72 +0.1 3,081,829 - CCNA_02921 0.72 +1.3 3,081,880 + CCNA_02921 0.75 -0.0 3,081,880 + CCNA_02921 0.75 +0.4 3,081,888 - CCNA_02921 0.75 +2.2 3,081,888 - CCNA_02921 0.75 -0.5 3,081,888 - CCNA_02921 0.75 -1.3 3,081,888 - CCNA_02921 0.75 +0.1 3,081,894 - CCNA_02921 0.76 +0.4 3,081,894 - CCNA_02921 0.76 -0.2 3,081,937 + CCNA_02921 0.78 -0.7 3,081,937 + CCNA_02921 0.78 +0.6 3,081,937 + CCNA_02921 0.78 -0.4 3,081,937 + CCNA_02921 0.78 +0.1 3,081,945 - CCNA_02921 0.79 -0.3 3,081,945 - CCNA_02921 0.79 +0.0 3,081,945 - CCNA_02921 0.79 -0.3 3,081,945 - CCNA_02921 0.79 +0.3 3,081,945 - CCNA_02921 0.79 +0.0 3,082,089 - CCNA_02921 0.87 +0.1 3,082,089 - CCNA_02921 0.87 -1.1 3,082,179 + +0.2 3,082,238 + -1.2 3,082,242 - -0.7 3,082,242 - -0.1 3,082,283 + +0.2 3,082,342 + CCNA_02922 0.16 +1.3 3,082,342 + CCNA_02922 0.16 -0.2 3,082,342 + CCNA_02922 0.16 +0.0 3,082,342 + CCNA_02922 0.16 -1.6 3,082,431 - CCNA_02922 0.78 -0.4 3,082,500 + +0.2 3,082,524 + -0.4 3,082,525 + -1.6 3,082,533 - -0.7 3,082,533 - +0.1 3,082,558 + -0.9 3,082,558 + -0.4 3,082,558 + -1.4 3,082,558 + -0.4 3,082,566 - -0.3 3,082,566 - -0.8 3,082,566 - +1.6 3,082,566 - +0.0 3,082,566 - -0.9 3,082,568 + -1.0 3,082,568 + -0.9 3,082,576 - +0.2 3,082,576 - -1.0 3,082,591 - -0.4 3,082,612 + +1.3 3,082,666 - -0.3 3,082,671 - -0.7 3,082,706 + -0.1 3,082,730 + +1.0 3,082,738 - -0.3 3,082,749 + -2.0 3,082,753 + +0.8 3,082,753 + -0.0 3,082,761 - +0.2 3,082,783 + -0.2 3,082,788 + -1.4 3,082,790 - -0.5 3,082,791 - +0.2 3,082,796 - +0.2 3,082,796 - -0.2 3,082,806 + -1.1 3,082,813 - +0.1 3,082,824 - +0.1 3,082,831 + +0.6 3,082,857 - -0.0 3,082,878 + -0.2 3,082,878 + -0.2 3,082,886 - +1.4 3,082,886 - +0.5 3,082,886 - -0.4 3,082,886 - +0.1 3,082,898 + +0.6 3,082,901 - -0.5 3,082,906 - -0.3 3,082,926 + +0.6 3,082,934 - -0.1 3,082,934 - +0.6 3,082,953 + +0.5 3,082,964 + +0.5 3,082,964 + +1.8 3,082,972 - +0.6 3,082,998 + -2.6 3,083,006 + -1.8 3,083,006 + +0.4 3,083,006 - +0.0 3,083,044 - +0.2 3,083,090 - CCNA_02923 0.11 +0.2 3,083,100 - CCNA_02923 0.11 +0.3 3,083,107 - CCNA_02923 0.11 +0.1 3,083,131 + CCNA_02923 0.12 +0.4 3,083,134 - CCNA_02923 0.12 -0.5 3,083,134 - CCNA_02923 0.12 -1.6 3,083,136 + CCNA_02923 0.12 -0.4 3,083,144 - CCNA_02923 0.12 +0.0 3,083,163 + CCNA_02923 0.13 +1.3 3,083,179 - CCNA_02923 0.13 -1.2 3,083,199 - CCNA_02923 0.14 +0.3 3,083,200 + CCNA_02923 0.14 +0.4 3,083,216 - CCNA_02923 0.15 -0.1 3,083,284 + CCNA_02923 0.17 -1.4 3,083,284 + CCNA_02923 0.17 -2.2 3,083,284 + CCNA_02923 0.17 -1.6 3,083,325 + CCNA_02923 0.18 -0.2 3,083,339 - CCNA_02923 0.19 +0.2 3,083,341 + CCNA_02923 0.19 -1.3 3,083,341 + CCNA_02923 0.19 +0.2 3,083,341 + CCNA_02923 0.19 -2.2 3,083,341 + CCNA_02923 0.19 +0.6 3,083,349 - CCNA_02923 0.19 -0.3 3,083,349 - CCNA_02923 0.19 -0.3 3,083,350 - CCNA_02923 0.19 +0.3 3,083,351 + CCNA_02923 0.19 -0.3 3,083,351 + CCNA_02923 0.19 -0.2 3,083,390 + CCNA_02923 0.20 +1.0 3,083,395 + CCNA_02923 0.20 -1.3 3,083,403 - CCNA_02923 0.21 -0.1 3,083,403 - CCNA_02923 0.21 -0.6 3,083,403 - CCNA_02923 0.21 -1.6 3,083,403 - CCNA_02923 0.21 +0.3 3,083,459 + CCNA_02923 0.23 +0.5
Or see this region's nucleotide sequence