Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02839 and CCNA_02840 are separated by 118 nucleotides CCNA_02840 and CCNA_02841 are separated by 87 nucleotides CCNA_02841 and CCNA_02842 are separated by 30 nucleotides
CCNA_02839: CCNA_02839 - glutamate-ammonia-ligase adenylyltransferase, at 2,991,299 to 2,994,175
_02839
CCNA_02840: CCNA_02840 - MecR1 antirepressor protein, at 2,994,294 to 2,995,181
_02840
CCNA_02841: CCNA_02841 - hypothetical protein, at 2,995,269 to 2,995,508
_02841
CCNA_02842: CCNA_02842 - two-component sensor histidine kinase, at 2,995,539 to 2,996,945
_02842
Position (kb)
2994
2995
2996 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2993.318 kb on - strand, within CCNA_02839 at 2993.371 kb on - strand, within CCNA_02839 at 2993.384 kb on + strand, within CCNA_02839 at 2993.384 kb on + strand, within CCNA_02839 at 2993.392 kb on - strand, within CCNA_02839 at 2993.403 kb on + strand, within CCNA_02839 at 2993.406 kb on - strand, within CCNA_02839 at 2993.416 kb on - strand, within CCNA_02839 at 2993.416 kb on - strand, within CCNA_02839 at 2993.450 kb on - strand, within CCNA_02839 at 2993.460 kb on - strand, within CCNA_02839 at 2993.464 kb on + strand, within CCNA_02839 at 2993.464 kb on + strand, within CCNA_02839 at 2993.472 kb on - strand, within CCNA_02839 at 2993.506 kb on + strand, within CCNA_02839 at 2993.522 kb on - strand, within CCNA_02839 at 2993.527 kb on - strand, within CCNA_02839 at 2993.527 kb on - strand, within CCNA_02839 at 2993.557 kb on - strand, within CCNA_02839 at 2993.565 kb on - strand, within CCNA_02839 at 2993.582 kb on + strand, within CCNA_02839 at 2993.694 kb on - strand, within CCNA_02839 at 2993.708 kb on + strand, within CCNA_02839 at 2993.708 kb on + strand, within CCNA_02839 at 2993.708 kb on + strand, within CCNA_02839 at 2993.716 kb on - strand, within CCNA_02839 at 2993.716 kb on - strand, within CCNA_02839 at 2993.716 kb on - strand, within CCNA_02839 at 2993.720 kb on + strand, within CCNA_02839 at 2993.728 kb on + strand, within CCNA_02839 at 2993.728 kb on - strand, within CCNA_02839 at 2993.736 kb on - strand, within CCNA_02839 at 2993.747 kb on + strand, within CCNA_02839 at 2993.747 kb on + strand, within CCNA_02839 at 2993.747 kb on + strand, within CCNA_02839 at 2993.755 kb on - strand, within CCNA_02839 at 2993.755 kb on - strand, within CCNA_02839 at 2993.793 kb on + strand, within CCNA_02839 at 2993.859 kb on + strand, within CCNA_02839 at 2993.970 kb on + strand at 2994.034 kb on - strand at 2994.047 kb on + strand at 2994.047 kb on + strand at 2994.047 kb on + strand at 2994.047 kb on + strand at 2994.055 kb on - strand at 2994.057 kb on + strand at 2994.120 kb on + strand at 2994.136 kb on - strand at 2994.136 kb on - strand at 2994.138 kb on + strand at 2994.182 kb on + strand at 2994.185 kb on - strand at 2994.190 kb on - strand at 2994.274 kb on + strand at 2994.310 kb on + strand at 2994.310 kb on + strand at 2994.323 kb on - strand at 2994.351 kb on - strand at 2994.409 kb on + strand, within CCNA_02840 at 2994.421 kb on + strand, within CCNA_02840 at 2994.421 kb on + strand, within CCNA_02840 at 2994.465 kb on - strand, within CCNA_02840 at 2994.471 kb on - strand, within CCNA_02840 at 2994.500 kb on + strand, within CCNA_02840 at 2994.500 kb on + strand, within CCNA_02840 at 2994.557 kb on + strand, within CCNA_02840 at 2994.568 kb on + strand, within CCNA_02840 at 2994.588 kb on + strand, within CCNA_02840 at 2994.606 kb on + strand, within CCNA_02840 at 2994.611 kb on + strand, within CCNA_02840 at 2994.611 kb on + strand, within CCNA_02840 at 2994.614 kb on - strand, within CCNA_02840 at 2994.652 kb on + strand, within CCNA_02840 at 2994.706 kb on + strand, within CCNA_02840 at 2994.712 kb on + strand, within CCNA_02840 at 2994.727 kb on + strand, within CCNA_02840 at 2994.727 kb on + strand, within CCNA_02840 at 2994.727 kb on + strand, within CCNA_02840 at 2994.727 kb on + strand, within CCNA_02840 at 2994.735 kb on - strand, within CCNA_02840 at 2994.842 kb on - strand, within CCNA_02840 at 2994.848 kb on - strand, within CCNA_02840 at 2994.853 kb on - strand, within CCNA_02840 at 2994.855 kb on - strand, within CCNA_02840 at 2994.864 kb on - strand, within CCNA_02840 at 2994.880 kb on - strand, within CCNA_02840 at 2994.881 kb on + strand, within CCNA_02840 at 2994.885 kb on + strand, within CCNA_02840 at 2994.915 kb on + strand, within CCNA_02840 at 2994.923 kb on - strand, within CCNA_02840 at 2994.939 kb on + strand, within CCNA_02840 at 2995.008 kb on + strand, within CCNA_02840 at 2995.075 kb on - strand, within CCNA_02840 at 2995.096 kb on + strand at 2995.113 kb on - strand at 2995.113 kb on - strand at 2995.113 kb on - strand at 2995.113 kb on - strand at 2995.131 kb on - strand at 2995.176 kb on + strand at 2995.209 kb on + strand at 2995.227 kb on - strand at 2995.265 kb on + strand at 2995.282 kb on + strand at 2995.285 kb on - strand at 2995.309 kb on - strand, within CCNA_02841 at 2995.317 kb on - strand, within CCNA_02841 at 2995.320 kb on + strand, within CCNA_02841 at 2995.322 kb on + strand, within CCNA_02841 at 2995.330 kb on - strand, within CCNA_02841 at 2995.381 kb on + strand, within CCNA_02841 at 2995.501 kb on - strand at 2995.501 kb on - strand at 2995.557 kb on + strand at 2995.574 kb on + strand at 2995.574 kb on + strand at 2995.574 kb on + strand at 2995.574 kb on + strand at 2995.577 kb on - strand at 2995.582 kb on - strand at 2995.582 kb on - strand at 2995.582 kb on - strand at 2995.582 kb on - strand at 2995.582 kb on - strand at 2995.582 kb on - strand at 2995.582 kb on - strand at 2995.582 kb on - strand at 2995.616 kb on + strand at 2995.624 kb on - strand at 2995.624 kb on - strand at 2995.624 kb on - strand at 2995.721 kb on - strand, within CCNA_02842 at 2995.721 kb on - strand, within CCNA_02842 at 2995.746 kb on - strand, within CCNA_02842 at 2995.759 kb on + strand, within CCNA_02842 at 2995.817 kb on - strand, within CCNA_02842 at 2995.863 kb on + strand, within CCNA_02842 at 2995.863 kb on + strand, within CCNA_02842 at 2995.869 kb on + strand, within CCNA_02842 at 2995.901 kb on - strand, within CCNA_02842 at 2995.988 kb on + strand, within CCNA_02842 at 2995.996 kb on - strand, within CCNA_02842 at 2995.996 kb on - strand, within CCNA_02842 at 2996.049 kb on + strand, within CCNA_02842 at 2996.059 kb on + strand, within CCNA_02842 at 2996.059 kb on + strand, within CCNA_02842 at 2996.068 kb on + strand, within CCNA_02842 at 2996.068 kb on + strand, within CCNA_02842 at 2996.076 kb on - strand, within CCNA_02842 at 2996.076 kb on - strand, within CCNA_02842 at 2996.076 kb on - strand, within CCNA_02842 at 2996.076 kb on - strand, within CCNA_02842 at 2996.111 kb on - strand, within CCNA_02842 at 2996.178 kb on + strand, within CCNA_02842
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 2,993,318 - CCNA_02839 0.70 +0.0 2,993,371 - CCNA_02839 0.72 +0.6 2,993,384 + CCNA_02839 0.72 -0.4 2,993,384 + CCNA_02839 0.72 +0.4 2,993,392 - CCNA_02839 0.73 -0.6 2,993,403 + CCNA_02839 0.73 -1.5 2,993,406 - CCNA_02839 0.73 -1.7 2,993,416 - CCNA_02839 0.74 -0.6 2,993,416 - CCNA_02839 0.74 -0.8 2,993,450 - CCNA_02839 0.75 -1.0 2,993,460 - CCNA_02839 0.75 -0.0 2,993,464 + CCNA_02839 0.75 -0.6 2,993,464 + CCNA_02839 0.75 +0.1 2,993,472 - CCNA_02839 0.76 +0.2 2,993,506 + CCNA_02839 0.77 +0.7 2,993,522 - CCNA_02839 0.77 -0.5 2,993,527 - CCNA_02839 0.77 +0.7 2,993,527 - CCNA_02839 0.77 +0.4 2,993,557 - CCNA_02839 0.78 -0.3 2,993,565 - CCNA_02839 0.79 -0.4 2,993,582 + CCNA_02839 0.79 -0.7 2,993,694 - CCNA_02839 0.83 -2.2 2,993,708 + CCNA_02839 0.84 -0.3 2,993,708 + CCNA_02839 0.84 -1.0 2,993,708 + CCNA_02839 0.84 -0.3 2,993,716 - CCNA_02839 0.84 +0.6 2,993,716 - CCNA_02839 0.84 -0.1 2,993,716 - CCNA_02839 0.84 +0.1 2,993,720 + CCNA_02839 0.84 +1.2 2,993,728 + CCNA_02839 0.84 -0.1 2,993,728 - CCNA_02839 0.84 +0.6 2,993,736 - CCNA_02839 0.85 +0.3 2,993,747 + CCNA_02839 0.85 +0.7 2,993,747 + CCNA_02839 0.85 -0.3 2,993,747 + CCNA_02839 0.85 +0.6 2,993,755 - CCNA_02839 0.85 -0.0 2,993,755 - CCNA_02839 0.85 -1.1 2,993,793 + CCNA_02839 0.87 -0.4 2,993,859 + CCNA_02839 0.89 -1.0 2,993,970 + +0.1 2,994,034 - -0.9 2,994,047 + -0.6 2,994,047 + -0.2 2,994,047 + -1.0 2,994,047 + -0.5 2,994,055 - +0.2 2,994,057 + +0.1 2,994,120 + -0.4 2,994,136 - -0.4 2,994,136 - +0.0 2,994,138 + -0.6 2,994,182 + +0.1 2,994,185 - +1.2 2,994,190 - +0.6 2,994,274 + -0.2 2,994,310 + -0.3 2,994,310 + -0.0 2,994,323 - -1.1 2,994,351 - +1.5 2,994,409 + CCNA_02840 0.13 -0.1 2,994,421 + CCNA_02840 0.14 +0.2 2,994,421 + CCNA_02840 0.14 +0.1 2,994,465 - CCNA_02840 0.19 +1.0 2,994,471 - CCNA_02840 0.20 +0.3 2,994,500 + CCNA_02840 0.23 -0.9 2,994,500 + CCNA_02840 0.23 +0.8 2,994,557 + CCNA_02840 0.30 -0.2 2,994,568 + CCNA_02840 0.31 -0.1 2,994,588 + CCNA_02840 0.33 -0.0 2,994,606 + CCNA_02840 0.35 +0.8 2,994,611 + CCNA_02840 0.36 -0.1 2,994,611 + CCNA_02840 0.36 +0.0 2,994,614 - CCNA_02840 0.36 -0.4 2,994,652 + CCNA_02840 0.40 -0.1 2,994,706 + CCNA_02840 0.46 +0.2 2,994,712 + CCNA_02840 0.47 -0.5 2,994,727 + CCNA_02840 0.49 +0.6 2,994,727 + CCNA_02840 0.49 +0.2 2,994,727 + CCNA_02840 0.49 +0.3 2,994,727 + CCNA_02840 0.49 +0.7 2,994,735 - CCNA_02840 0.50 +0.4 2,994,842 - CCNA_02840 0.62 -0.5 2,994,848 - CCNA_02840 0.62 +0.1 2,994,853 - CCNA_02840 0.63 +1.4 2,994,855 - CCNA_02840 0.63 -0.3 2,994,864 - CCNA_02840 0.64 -0.2 2,994,880 - CCNA_02840 0.66 -0.5 2,994,881 + CCNA_02840 0.66 +0.4 2,994,885 + CCNA_02840 0.67 +0.7 2,994,915 + CCNA_02840 0.70 -0.6 2,994,923 - CCNA_02840 0.71 +0.1 2,994,939 + CCNA_02840 0.73 -0.2 2,995,008 + CCNA_02840 0.80 +0.3 2,995,075 - CCNA_02840 0.88 +0.2 2,995,096 + +0.4 2,995,113 - +0.5 2,995,113 - -0.2 2,995,113 - +0.5 2,995,113 - -0.0 2,995,131 - -0.8 2,995,176 + +0.8 2,995,209 + +0.1 2,995,227 - -1.1 2,995,265 + +0.1 2,995,282 + -0.0 2,995,285 - -0.1 2,995,309 - CCNA_02841 0.17 -0.6 2,995,317 - CCNA_02841 0.20 -0.4 2,995,320 + CCNA_02841 0.21 +0.2 2,995,322 + CCNA_02841 0.22 +0.7 2,995,330 - CCNA_02841 0.25 -0.8 2,995,381 + CCNA_02841 0.47 -0.8 2,995,501 - -0.1 2,995,501 - +0.8 2,995,557 + -0.1 2,995,574 + -0.4 2,995,574 + -0.5 2,995,574 + +0.8 2,995,574 + -0.1 2,995,577 - +0.6 2,995,582 - +0.3 2,995,582 - -0.1 2,995,582 - +0.6 2,995,582 - +0.3 2,995,582 - -0.2 2,995,582 - +0.2 2,995,582 - -0.3 2,995,582 - -0.9 2,995,616 + -0.6 2,995,624 - +0.5 2,995,624 - +0.9 2,995,624 - +0.1 2,995,721 - CCNA_02842 0.13 +0.5 2,995,721 - CCNA_02842 0.13 +0.4 2,995,746 - CCNA_02842 0.15 -0.3 2,995,759 + CCNA_02842 0.16 -0.3 2,995,817 - CCNA_02842 0.20 +0.1 2,995,863 + CCNA_02842 0.23 -0.3 2,995,863 + CCNA_02842 0.23 -1.1 2,995,869 + CCNA_02842 0.23 +0.4 2,995,901 - CCNA_02842 0.26 +0.5 2,995,988 + CCNA_02842 0.32 +0.9 2,995,996 - CCNA_02842 0.32 -0.2 2,995,996 - CCNA_02842 0.32 -0.6 2,996,049 + CCNA_02842 0.36 +1.9 2,996,059 + CCNA_02842 0.37 -0.3 2,996,059 + CCNA_02842 0.37 -0.2 2,996,068 + CCNA_02842 0.38 +0.5 2,996,068 + CCNA_02842 0.38 +0.3 2,996,076 - CCNA_02842 0.38 +0.7 2,996,076 - CCNA_02842 0.38 +0.3 2,996,076 - CCNA_02842 0.38 +0.5 2,996,076 - CCNA_02842 0.38 -0.4 2,996,111 - CCNA_02842 0.41 +0.2 2,996,178 + CCNA_02842 0.45 +0.3
Or see this region's nucleotide sequence