Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02756 and CCNA_02757 are separated by 154 nucleotides CCNA_02757 and CCNA_02758 are separated by 57 nucleotides CCNA_02758 and CCNA_02759 are separated by 152 nucleotides
CCNA_02756: CCNA_02756 - competence/damage-inducible protein CinA, at 2,920,073 to 2,920,831
_02756
CCNA_02757: CCNA_02757 - sugar fermentation stimulation protein A, at 2,920,986 to 2,921,705
_02757
CCNA_02758: CCNA_02758 - hypothetical protein, at 2,921,763 to 2,922,152
_02758
CCNA_02759: CCNA_02759 - methionine aminopeptidase, at 2,922,305 to 2,923,135
_02759
Position (kb)
2921
2922
2923 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2920.766 kb on - strand at 2920.775 kb on + strand at 2920.835 kb on - strand at 2920.852 kb on + strand at 2920.859 kb on + strand at 2920.867 kb on - strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.869 kb on + strand at 2920.875 kb on + strand at 2920.877 kb on - strand at 2920.877 kb on - strand at 2920.877 kb on - strand at 2920.878 kb on - strand at 2920.881 kb on + strand at 2920.883 kb on - strand at 2920.966 kb on - strand at 2920.966 kb on - strand at 2920.968 kb on + strand at 2920.972 kb on + strand at 2920.972 kb on + strand at 2920.972 kb on + strand at 2920.973 kb on + strand at 2921.011 kb on + strand at 2921.014 kb on - strand at 2921.016 kb on + strand at 2921.024 kb on - strand at 2921.024 kb on - strand at 2921.024 kb on - strand at 2921.039 kb on + strand at 2921.050 kb on + strand at 2921.072 kb on + strand, within CCNA_02757 at 2921.080 kb on - strand, within CCNA_02757 at 2921.089 kb on + strand, within CCNA_02757 at 2921.089 kb on + strand, within CCNA_02757 at 2921.097 kb on - strand, within CCNA_02757 at 2921.127 kb on + strand, within CCNA_02757 at 2921.127 kb on + strand, within CCNA_02757 at 2921.127 kb on + strand, within CCNA_02757 at 2921.127 kb on + strand, within CCNA_02757 at 2921.135 kb on - strand, within CCNA_02757 at 2921.135 kb on - strand, within CCNA_02757 at 2921.135 kb on - strand, within CCNA_02757 at 2921.135 kb on - strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.174 kb on + strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.182 kb on - strand, within CCNA_02757 at 2921.213 kb on + strand, within CCNA_02757 at 2921.213 kb on + strand, within CCNA_02757 at 2921.213 kb on + strand, within CCNA_02757 at 2921.221 kb on - strand, within CCNA_02757 at 2921.227 kb on - strand, within CCNA_02757 at 2921.232 kb on - strand, within CCNA_02757 at 2921.255 kb on + strand, within CCNA_02757 at 2921.305 kb on + strand, within CCNA_02757 at 2921.313 kb on + strand, within CCNA_02757 at 2921.341 kb on + strand, within CCNA_02757 at 2921.354 kb on - strand, within CCNA_02757 at 2921.377 kb on + strand, within CCNA_02757 at 2921.384 kb on + strand, within CCNA_02757 at 2921.392 kb on - strand, within CCNA_02757 at 2921.410 kb on + strand, within CCNA_02757 at 2921.418 kb on - strand, within CCNA_02757 at 2921.435 kb on + strand, within CCNA_02757 at 2921.435 kb on + strand, within CCNA_02757 at 2921.443 kb on - strand, within CCNA_02757 at 2921.447 kb on + strand, within CCNA_02757 at 2921.447 kb on + strand, within CCNA_02757 at 2921.483 kb on + strand, within CCNA_02757 at 2921.491 kb on - strand, within CCNA_02757 at 2921.505 kb on + strand, within CCNA_02757 at 2921.526 kb on + strand, within CCNA_02757 at 2921.531 kb on + strand, within CCNA_02757 at 2921.559 kb on + strand, within CCNA_02757 at 2921.585 kb on + strand, within CCNA_02757 at 2921.603 kb on + strand, within CCNA_02757 at 2921.608 kb on + strand, within CCNA_02757 at 2921.616 kb on - strand, within CCNA_02757 at 2921.624 kb on - strand, within CCNA_02757 at 2921.624 kb on - strand, within CCNA_02757 at 2921.629 kb on - strand, within CCNA_02757 at 2921.699 kb on + strand at 2921.699 kb on + strand at 2921.725 kb on + strand at 2921.733 kb on - strand at 2921.761 kb on + strand at 2921.770 kb on + strand at 2921.773 kb on - strand at 2921.799 kb on - strand at 2921.916 kb on + strand, within CCNA_02758 at 2921.917 kb on + strand, within CCNA_02758 at 2921.937 kb on - strand, within CCNA_02758 at 2921.950 kb on - strand, within CCNA_02758 at 2921.957 kb on + strand, within CCNA_02758 at 2921.963 kb on + strand, within CCNA_02758 at 2922.028 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.041 kb on + strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.049 kb on - strand, within CCNA_02758 at 2922.056 kb on - strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.074 kb on + strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.082 kb on - strand, within CCNA_02758 at 2922.154 kb on + strand at 2922.154 kb on + strand at 2922.154 kb on + strand at 2922.159 kb on + strand at 2922.161 kb on + strand at 2922.162 kb on - strand at 2922.243 kb on + strand at 2922.243 kb on + strand at 2922.251 kb on - strand at 2922.263 kb on + strand at 2922.268 kb on + strand at 2922.350 kb on + strand at 2922.350 kb on + strand at 2922.350 kb on + strand at 2922.363 kb on - strand at 2922.363 kb on - strand at 2922.363 kb on - strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.364 kb on + strand at 2922.372 kb on - strand at 2922.372 kb on - strand at 2922.379 kb on + strand at 2923.108 kb on + strand at 2923.116 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 2,920,766 - -0.5 2,920,775 + +0.3 2,920,835 - +0.9 2,920,852 + +0.2 2,920,859 + +0.3 2,920,867 - -0.1 2,920,869 + +0.6 2,920,869 + -0.7 2,920,869 + -0.2 2,920,869 + +0.9 2,920,869 + -0.2 2,920,869 + -0.0 2,920,869 + +0.6 2,920,875 + -0.6 2,920,877 - -0.3 2,920,877 - +0.4 2,920,877 - -1.3 2,920,878 - +2.1 2,920,881 + -0.6 2,920,883 - +1.3 2,920,966 - -0.2 2,920,966 - +0.2 2,920,968 + -1.0 2,920,972 + -2.0 2,920,972 + -0.0 2,920,972 + -0.8 2,920,973 + -0.0 2,921,011 + -0.3 2,921,014 - +0.3 2,921,016 + +0.0 2,921,024 - -0.3 2,921,024 - -0.6 2,921,024 - +0.1 2,921,039 + -0.0 2,921,050 + -0.9 2,921,072 + CCNA_02757 0.12 +0.3 2,921,080 - CCNA_02757 0.13 -0.5 2,921,089 + CCNA_02757 0.14 +0.3 2,921,089 + CCNA_02757 0.14 +0.4 2,921,097 - CCNA_02757 0.15 -0.8 2,921,127 + CCNA_02757 0.20 -0.5 2,921,127 + CCNA_02757 0.20 +0.4 2,921,127 + CCNA_02757 0.20 -1.1 2,921,127 + CCNA_02757 0.20 +0.4 2,921,135 - CCNA_02757 0.21 +0.5 2,921,135 - CCNA_02757 0.21 -0.1 2,921,135 - CCNA_02757 0.21 -0.2 2,921,135 - CCNA_02757 0.21 +0.1 2,921,174 + CCNA_02757 0.26 -0.4 2,921,174 + CCNA_02757 0.26 +0.2 2,921,174 + CCNA_02757 0.26 +0.6 2,921,174 + CCNA_02757 0.26 -0.1 2,921,174 + CCNA_02757 0.26 +1.3 2,921,174 + CCNA_02757 0.26 +1.1 2,921,174 + CCNA_02757 0.26 +0.7 2,921,174 + CCNA_02757 0.26 -1.0 2,921,174 + CCNA_02757 0.26 -0.8 2,921,174 + CCNA_02757 0.26 -2.3 2,921,174 + CCNA_02757 0.26 -0.2 2,921,174 + CCNA_02757 0.26 +0.2 2,921,174 + CCNA_02757 0.26 -0.6 2,921,182 - CCNA_02757 0.27 +0.0 2,921,182 - CCNA_02757 0.27 +1.4 2,921,182 - CCNA_02757 0.27 +0.3 2,921,182 - CCNA_02757 0.27 -0.0 2,921,182 - CCNA_02757 0.27 -1.0 2,921,182 - CCNA_02757 0.27 +0.8 2,921,182 - CCNA_02757 0.27 -0.1 2,921,182 - CCNA_02757 0.27 -0.1 2,921,182 - CCNA_02757 0.27 +0.1 2,921,182 - CCNA_02757 0.27 -0.2 2,921,182 - CCNA_02757 0.27 +0.0 2,921,182 - CCNA_02757 0.27 +0.6 2,921,182 - CCNA_02757 0.27 -0.9 2,921,182 - CCNA_02757 0.27 -0.6 2,921,182 - CCNA_02757 0.27 +0.2 2,921,182 - CCNA_02757 0.27 +1.2 2,921,182 - CCNA_02757 0.27 +0.0 2,921,182 - CCNA_02757 0.27 -0.8 2,921,182 - CCNA_02757 0.27 +1.0 2,921,213 + CCNA_02757 0.32 -0.7 2,921,213 + CCNA_02757 0.32 -0.7 2,921,213 + CCNA_02757 0.32 +0.2 2,921,221 - CCNA_02757 0.33 +0.3 2,921,227 - CCNA_02757 0.33 +0.2 2,921,232 - CCNA_02757 0.34 +0.3 2,921,255 + CCNA_02757 0.37 -0.7 2,921,305 + CCNA_02757 0.44 -0.6 2,921,313 + CCNA_02757 0.45 -0.3 2,921,341 + CCNA_02757 0.49 -0.0 2,921,354 - CCNA_02757 0.51 -0.5 2,921,377 + CCNA_02757 0.54 -0.5 2,921,384 + CCNA_02757 0.55 -0.3 2,921,392 - CCNA_02757 0.56 +0.1 2,921,410 + CCNA_02757 0.59 -0.1 2,921,418 - CCNA_02757 0.60 -0.7 2,921,435 + CCNA_02757 0.62 -0.9 2,921,435 + CCNA_02757 0.62 -0.6 2,921,443 - CCNA_02757 0.63 +0.1 2,921,447 + CCNA_02757 0.64 -0.3 2,921,447 + CCNA_02757 0.64 -1.6 2,921,483 + CCNA_02757 0.69 +0.3 2,921,491 - CCNA_02757 0.70 -0.7 2,921,505 + CCNA_02757 0.72 +0.3 2,921,526 + CCNA_02757 0.75 +0.3 2,921,531 + CCNA_02757 0.76 +0.5 2,921,559 + CCNA_02757 0.80 -0.2 2,921,585 + CCNA_02757 0.83 -0.3 2,921,603 + CCNA_02757 0.86 -0.0 2,921,608 + CCNA_02757 0.86 -0.1 2,921,616 - CCNA_02757 0.88 -0.1 2,921,624 - CCNA_02757 0.89 +0.2 2,921,624 - CCNA_02757 0.89 -0.7 2,921,629 - CCNA_02757 0.89 +0.1 2,921,699 + -0.5 2,921,699 + +0.3 2,921,725 + +0.3 2,921,733 - +0.4 2,921,761 + +0.3 2,921,770 + +1.7 2,921,773 - +1.1 2,921,799 - -1.9 2,921,916 + CCNA_02758 0.39 +0.8 2,921,917 + CCNA_02758 0.39 -0.2 2,921,937 - CCNA_02758 0.45 -0.3 2,921,950 - CCNA_02758 0.48 -1.0 2,921,957 + CCNA_02758 0.50 +0.2 2,921,963 + CCNA_02758 0.51 +1.0 2,922,028 + CCNA_02758 0.68 -0.1 2,922,041 + CCNA_02758 0.71 +0.8 2,922,041 + CCNA_02758 0.71 -1.4 2,922,041 + CCNA_02758 0.71 -0.4 2,922,041 + CCNA_02758 0.71 -1.0 2,922,049 - CCNA_02758 0.73 -0.8 2,922,049 - CCNA_02758 0.73 +0.3 2,922,049 - CCNA_02758 0.73 -1.3 2,922,056 - CCNA_02758 0.75 -0.7 2,922,074 + CCNA_02758 0.80 +0.2 2,922,074 + CCNA_02758 0.80 -0.2 2,922,074 + CCNA_02758 0.80 -0.3 2,922,074 + CCNA_02758 0.80 -0.4 2,922,074 + CCNA_02758 0.80 +0.3 2,922,074 + CCNA_02758 0.80 -0.8 2,922,074 + CCNA_02758 0.80 -0.1 2,922,082 - CCNA_02758 0.82 -0.0 2,922,082 - CCNA_02758 0.82 +1.3 2,922,082 - CCNA_02758 0.82 +0.1 2,922,082 - CCNA_02758 0.82 +0.1 2,922,082 - CCNA_02758 0.82 -0.8 2,922,154 + +0.1 2,922,154 + +0.3 2,922,154 + +0.4 2,922,159 + -0.1 2,922,161 + -0.0 2,922,162 - +1.0 2,922,243 + +1.9 2,922,243 + +0.6 2,922,251 - +0.7 2,922,263 + +0.8 2,922,268 + -0.1 2,922,350 + +0.8 2,922,350 + +0.5 2,922,350 + +1.1 2,922,363 - +0.2 2,922,363 - -0.3 2,922,363 - -0.5 2,922,364 + +0.6 2,922,364 + -0.9 2,922,364 + +0.1 2,922,364 + -0.1 2,922,372 - +0.7 2,922,372 - -2.2 2,922,379 + -0.9 2,923,108 + +1.2 2,923,116 - -0.2
Or see this region's nucleotide sequence