Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02711 and CCNA_02712 overlap by 4 nucleotides CCNA_02712 and CCNA_02713 overlap by 83 nucleotides CCNA_02713 and CCNA_02714 are separated by 117 nucleotides
CCNA_02711: CCNA_02711 - holdfast attachment protein hfaA, at 2,870,419 to 2,870,862
_02711
CCNA_02712: CCNA_02712 - holdfast attachment protein hfaB, at 2,870,859 to 2,871,872
_02712
CCNA_02713: CCNA_02713 - holdfast attachment protein hfaD, at 2,871,790 to 2,873,037
_02713
CCNA_02714: CCNA_02714 - ABC transporter ATP-binding protein uup, at 2,873,155 to 2,874,981
_02714
Position (kb)
2871
2872
2873
2874 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2870.792 kb on + strand, within CCNA_02711 at 2870.795 kb on - strand, within CCNA_02711 at 2870.800 kb on - strand, within CCNA_02711 at 2870.826 kb on - strand at 2870.836 kb on + strand at 2870.883 kb on + strand at 2870.891 kb on - strand at 2870.891 kb on - strand at 2870.891 kb on - strand at 2870.900 kb on - strand at 2870.966 kb on + strand, within CCNA_02712 at 2870.974 kb on - strand, within CCNA_02712 at 2870.984 kb on - strand, within CCNA_02712 at 2871.000 kb on + strand, within CCNA_02712 at 2871.002 kb on + strand, within CCNA_02712 at 2871.025 kb on - strand, within CCNA_02712 at 2871.106 kb on + strand, within CCNA_02712 at 2871.122 kb on - strand, within CCNA_02712 at 2871.162 kb on + strand, within CCNA_02712 at 2871.178 kb on + strand, within CCNA_02712 at 2871.186 kb on - strand, within CCNA_02712 at 2871.188 kb on + strand, within CCNA_02712 at 2871.195 kb on + strand, within CCNA_02712 at 2871.196 kb on - strand, within CCNA_02712 at 2871.259 kb on + strand, within CCNA_02712 at 2871.260 kb on + strand, within CCNA_02712 at 2871.268 kb on - strand, within CCNA_02712 at 2871.268 kb on - strand, within CCNA_02712 at 2871.268 kb on - strand, within CCNA_02712 at 2871.268 kb on - strand, within CCNA_02712 at 2871.268 kb on - strand, within CCNA_02712 at 2871.329 kb on + strand, within CCNA_02712 at 2871.329 kb on + strand, within CCNA_02712 at 2871.329 kb on + strand, within CCNA_02712 at 2871.329 kb on + strand, within CCNA_02712 at 2871.337 kb on - strand, within CCNA_02712 at 2871.384 kb on + strand, within CCNA_02712 at 2871.416 kb on - strand, within CCNA_02712 at 2871.462 kb on + strand, within CCNA_02712 at 2871.463 kb on + strand, within CCNA_02712 at 2871.558 kb on - strand, within CCNA_02712 at 2871.644 kb on + strand, within CCNA_02712 at 2871.675 kb on + strand, within CCNA_02712 at 2871.712 kb on + strand, within CCNA_02712 at 2871.720 kb on - strand, within CCNA_02712 at 2871.720 kb on - strand, within CCNA_02712 at 2871.754 kb on + strand, within CCNA_02712 at 2871.765 kb on + strand, within CCNA_02712 at 2871.770 kb on + strand, within CCNA_02712 at 2871.775 kb on + strand at 2871.805 kb on - strand at 2871.835 kb on + strand at 2871.843 kb on - strand at 2871.845 kb on - strand at 2871.853 kb on - strand at 2871.860 kb on + strand at 2871.866 kb on + strand at 2871.874 kb on - strand at 2871.874 kb on - strand at 2871.903 kb on - strand at 2871.942 kb on - strand, within CCNA_02713 at 2871.957 kb on - strand, within CCNA_02713 at 2871.958 kb on + strand, within CCNA_02713 at 2871.958 kb on + strand, within CCNA_02713 at 2871.966 kb on - strand, within CCNA_02713 at 2871.996 kb on - strand, within CCNA_02713 at 2872.001 kb on - strand, within CCNA_02713 at 2872.001 kb on - strand, within CCNA_02713 at 2872.012 kb on + strand, within CCNA_02713 at 2872.040 kb on + strand, within CCNA_02713 at 2872.066 kb on + strand, within CCNA_02713 at 2872.073 kb on + strand, within CCNA_02713 at 2872.073 kb on + strand, within CCNA_02713 at 2872.100 kb on + strand, within CCNA_02713 at 2872.159 kb on + strand, within CCNA_02713 at 2872.174 kb on + strand, within CCNA_02713 at 2872.182 kb on - strand, within CCNA_02713 at 2872.182 kb on - strand, within CCNA_02713 at 2872.197 kb on - strand, within CCNA_02713 at 2872.235 kb on - strand, within CCNA_02713 at 2872.272 kb on - strand, within CCNA_02713 at 2872.297 kb on - strand, within CCNA_02713 at 2872.300 kb on + strand, within CCNA_02713 at 2872.308 kb on - strand, within CCNA_02713 at 2872.412 kb on + strand, within CCNA_02713 at 2872.453 kb on - strand, within CCNA_02713 at 2872.462 kb on - strand, within CCNA_02713 at 2872.472 kb on + strand, within CCNA_02713 at 2872.477 kb on + strand, within CCNA_02713 at 2872.477 kb on + strand, within CCNA_02713 at 2872.480 kb on - strand, within CCNA_02713 at 2872.482 kb on + strand, within CCNA_02713 at 2872.482 kb on + strand, within CCNA_02713 at 2872.487 kb on + strand, within CCNA_02713 at 2872.490 kb on - strand, within CCNA_02713 at 2872.490 kb on - strand, within CCNA_02713 at 2872.501 kb on + strand, within CCNA_02713 at 2872.501 kb on + strand, within CCNA_02713 at 2872.501 kb on + strand, within CCNA_02713 at 2872.623 kb on + strand, within CCNA_02713 at 2872.623 kb on + strand, within CCNA_02713 at 2872.631 kb on + strand, within CCNA_02713 at 2872.631 kb on + strand, within CCNA_02713 at 2872.631 kb on - strand, within CCNA_02713 at 2872.639 kb on - strand, within CCNA_02713 at 2872.650 kb on + strand, within CCNA_02713 at 2872.653 kb on - strand, within CCNA_02713 at 2872.658 kb on - strand, within CCNA_02713 at 2872.661 kb on + strand, within CCNA_02713 at 2872.669 kb on - strand, within CCNA_02713 at 2872.679 kb on - strand, within CCNA_02713 at 2872.681 kb on + strand, within CCNA_02713 at 2872.681 kb on + strand, within CCNA_02713 at 2872.686 kb on + strand, within CCNA_02713 at 2872.689 kb on - strand, within CCNA_02713 at 2872.689 kb on - strand, within CCNA_02713 at 2872.689 kb on - strand, within CCNA_02713 at 2872.689 kb on - strand, within CCNA_02713 at 2872.689 kb on - strand, within CCNA_02713 at 2872.692 kb on + strand, within CCNA_02713 at 2872.694 kb on - strand, within CCNA_02713 at 2872.702 kb on + strand, within CCNA_02713 at 2872.710 kb on - strand, within CCNA_02713 at 2872.719 kb on + strand, within CCNA_02713 at 2872.719 kb on + strand, within CCNA_02713 at 2872.727 kb on - strand, within CCNA_02713 at 2872.727 kb on - strand, within CCNA_02713 at 2872.807 kb on + strand, within CCNA_02713 at 2872.813 kb on + strand, within CCNA_02713 at 2872.853 kb on - strand, within CCNA_02713 at 2872.853 kb on - strand, within CCNA_02713 at 2872.855 kb on - strand, within CCNA_02713 at 2872.855 kb on - strand, within CCNA_02713 at 2872.861 kb on + strand, within CCNA_02713 at 2872.865 kb on + strand, within CCNA_02713 at 2872.894 kb on + strand, within CCNA_02713 at 2872.894 kb on + strand, within CCNA_02713 at 2872.900 kb on + strand, within CCNA_02713 at 2872.914 kb on + strand at 2872.957 kb on - strand at 2872.971 kb on + strand at 2873.039 kb on - strand at 2873.079 kb on + strand at 2873.097 kb on + strand at 2873.097 kb on + strand at 2873.097 kb on + strand at 2873.105 kb on - strand at 2873.106 kb on - strand at 2873.130 kb on + strand at 2873.141 kb on + strand at 2873.151 kb on - strand at 2873.152 kb on + strand at 2873.152 kb on + strand at 2873.152 kb on + strand at 2873.160 kb on - strand at 2873.160 kb on - strand at 2873.160 kb on - strand at 2873.160 kb on - strand at 2873.160 kb on - strand at 2873.176 kb on + strand at 2873.234 kb on + strand at 2873.234 kb on + strand at 2873.242 kb on - strand at 2873.359 kb on + strand, within CCNA_02714 at 2873.359 kb on + strand, within CCNA_02714 at 2873.367 kb on - strand, within CCNA_02714 at 2873.367 kb on - strand, within CCNA_02714 at 2873.367 kb on - strand, within CCNA_02714 at 2873.369 kb on + strand, within CCNA_02714 at 2873.374 kb on + strand, within CCNA_02714 at 2873.377 kb on - strand, within CCNA_02714 at 2873.419 kb on + strand, within CCNA_02714 at 2873.419 kb on + strand, within CCNA_02714 at 2873.425 kb on - strand, within CCNA_02714 at 2873.427 kb on - strand, within CCNA_02714 at 2873.427 kb on - strand, within CCNA_02714 at 2873.429 kb on + strand, within CCNA_02714 at 2873.446 kb on + strand, within CCNA_02714 at 2873.454 kb on - strand, within CCNA_02714 at 2873.454 kb on - strand, within CCNA_02714 at 2873.454 kb on - strand, within CCNA_02714 at 2873.459 kb on - strand, within CCNA_02714 at 2873.459 kb on - strand, within CCNA_02714 at 2873.504 kb on + strand, within CCNA_02714 at 2873.542 kb on + strand, within CCNA_02714 at 2873.542 kb on + strand, within CCNA_02714 at 2873.550 kb on - strand, within CCNA_02714 at 2873.550 kb on - strand, within CCNA_02714 at 2873.649 kb on + strand, within CCNA_02714 at 2873.657 kb on - strand, within CCNA_02714 at 2873.663 kb on + strand, within CCNA_02714 at 2873.670 kb on - strand, within CCNA_02714 at 2873.670 kb on - strand, within CCNA_02714 at 2873.697 kb on - strand, within CCNA_02714 at 2873.697 kb on - strand, within CCNA_02714 at 2873.720 kb on + strand, within CCNA_02714 at 2873.722 kb on - strand, within CCNA_02714 at 2873.722 kb on - strand, within CCNA_02714 at 2873.730 kb on + strand, within CCNA_02714 at 2873.748 kb on + strand, within CCNA_02714 at 2873.757 kb on - strand, within CCNA_02714 at 2873.762 kb on - strand, within CCNA_02714 at 2873.777 kb on + strand, within CCNA_02714 at 2873.780 kb on - strand, within CCNA_02714 at 2873.830 kb on + strand, within CCNA_02714 at 2873.864 kb on - strand, within CCNA_02714 at 2873.864 kb on - strand, within CCNA_02714 at 2873.874 kb on - strand, within CCNA_02714 at 2873.882 kb on + strand, within CCNA_02714 at 2873.950 kb on + strand, within CCNA_02714 at 2873.952 kb on + strand, within CCNA_02714 at 2873.971 kb on + strand, within CCNA_02714 at 2873.971 kb on + strand, within CCNA_02714 at 2873.971 kb on + strand, within CCNA_02714 at 2873.979 kb on - strand, within CCNA_02714 at 2874.015 kb on - strand, within CCNA_02714
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 2,870,792 + CCNA_02711 0.84 +0.2 2,870,795 - CCNA_02711 0.85 +0.6 2,870,800 - CCNA_02711 0.86 +0.6 2,870,826 - -1.3 2,870,836 + +0.8 2,870,883 + +1.5 2,870,891 - -0.4 2,870,891 - -1.4 2,870,891 - -0.5 2,870,900 - -0.7 2,870,966 + CCNA_02712 0.11 +0.9 2,870,974 - CCNA_02712 0.11 -1.0 2,870,984 - CCNA_02712 0.12 -0.2 2,871,000 + CCNA_02712 0.14 +0.7 2,871,002 + CCNA_02712 0.14 +0.1 2,871,025 - CCNA_02712 0.16 +1.0 2,871,106 + CCNA_02712 0.24 -0.2 2,871,122 - CCNA_02712 0.26 +0.4 2,871,162 + CCNA_02712 0.30 +0.4 2,871,178 + CCNA_02712 0.31 -1.2 2,871,186 - CCNA_02712 0.32 -1.5 2,871,188 + CCNA_02712 0.32 +1.1 2,871,195 + CCNA_02712 0.33 +0.8 2,871,196 - CCNA_02712 0.33 -1.5 2,871,259 + CCNA_02712 0.39 +0.4 2,871,260 + CCNA_02712 0.40 +0.6 2,871,268 - CCNA_02712 0.40 +0.2 2,871,268 - CCNA_02712 0.40 -0.8 2,871,268 - CCNA_02712 0.40 -0.0 2,871,268 - CCNA_02712 0.40 -1.5 2,871,268 - CCNA_02712 0.40 -0.3 2,871,329 + CCNA_02712 0.46 -0.3 2,871,329 + CCNA_02712 0.46 +1.0 2,871,329 + CCNA_02712 0.46 +0.3 2,871,329 + CCNA_02712 0.46 +0.2 2,871,337 - CCNA_02712 0.47 +0.6 2,871,384 + CCNA_02712 0.52 +0.5 2,871,416 - CCNA_02712 0.55 -0.2 2,871,462 + CCNA_02712 0.59 -0.1 2,871,463 + CCNA_02712 0.60 +1.1 2,871,558 - CCNA_02712 0.69 -0.4 2,871,644 + CCNA_02712 0.77 +1.6 2,871,675 + CCNA_02712 0.80 +0.2 2,871,712 + CCNA_02712 0.84 +1.3 2,871,720 - CCNA_02712 0.85 +0.3 2,871,720 - CCNA_02712 0.85 +0.3 2,871,754 + CCNA_02712 0.88 +0.7 2,871,765 + CCNA_02712 0.89 +1.4 2,871,770 + CCNA_02712 0.90 +0.1 2,871,775 + +0.5 2,871,805 - -0.6 2,871,835 + +0.3 2,871,843 - -1.3 2,871,845 - -0.8 2,871,853 - -1.7 2,871,860 + +0.8 2,871,866 + -0.7 2,871,874 - -0.7 2,871,874 - -0.6 2,871,903 - -1.7 2,871,942 - CCNA_02713 0.12 +0.8 2,871,957 - CCNA_02713 0.13 +0.0 2,871,958 + CCNA_02713 0.13 -0.0 2,871,958 + CCNA_02713 0.13 -0.3 2,871,966 - CCNA_02713 0.14 -0.2 2,871,996 - CCNA_02713 0.17 +0.9 2,872,001 - CCNA_02713 0.17 +0.3 2,872,001 - CCNA_02713 0.17 +0.2 2,872,012 + CCNA_02713 0.18 +0.3 2,872,040 + CCNA_02713 0.20 +0.5 2,872,066 + CCNA_02713 0.22 -0.3 2,872,073 + CCNA_02713 0.23 +0.2 2,872,073 + CCNA_02713 0.23 +0.5 2,872,100 + CCNA_02713 0.25 +0.4 2,872,159 + CCNA_02713 0.30 +0.7 2,872,174 + CCNA_02713 0.31 -0.4 2,872,182 - CCNA_02713 0.31 -0.5 2,872,182 - CCNA_02713 0.31 -2.0 2,872,197 - CCNA_02713 0.33 -0.4 2,872,235 - CCNA_02713 0.36 +0.0 2,872,272 - CCNA_02713 0.39 -0.7 2,872,297 - CCNA_02713 0.41 +0.2 2,872,300 + CCNA_02713 0.41 +0.3 2,872,308 - CCNA_02713 0.42 +0.8 2,872,412 + CCNA_02713 0.50 -0.9 2,872,453 - CCNA_02713 0.53 +0.4 2,872,462 - CCNA_02713 0.54 +0.5 2,872,472 + CCNA_02713 0.55 +1.1 2,872,477 + CCNA_02713 0.55 +0.8 2,872,477 + CCNA_02713 0.55 +0.8 2,872,480 - CCNA_02713 0.55 +0.2 2,872,482 + CCNA_02713 0.55 -0.1 2,872,482 + CCNA_02713 0.55 -0.1 2,872,487 + CCNA_02713 0.56 +0.4 2,872,490 - CCNA_02713 0.56 +0.4 2,872,490 - CCNA_02713 0.56 -0.6 2,872,501 + CCNA_02713 0.57 -1.5 2,872,501 + CCNA_02713 0.57 +0.5 2,872,501 + CCNA_02713 0.57 +1.2 2,872,623 + CCNA_02713 0.67 +0.3 2,872,623 + CCNA_02713 0.67 -0.3 2,872,631 + CCNA_02713 0.67 -0.3 2,872,631 + CCNA_02713 0.67 +0.2 2,872,631 - CCNA_02713 0.67 +0.9 2,872,639 - CCNA_02713 0.68 +2.2 2,872,650 + CCNA_02713 0.69 -0.8 2,872,653 - CCNA_02713 0.69 -0.2 2,872,658 - CCNA_02713 0.70 -0.4 2,872,661 + CCNA_02713 0.70 -0.6 2,872,669 - CCNA_02713 0.70 -0.1 2,872,679 - CCNA_02713 0.71 -0.8 2,872,681 + CCNA_02713 0.71 +0.4 2,872,681 + CCNA_02713 0.71 +0.6 2,872,686 + CCNA_02713 0.72 +0.4 2,872,689 - CCNA_02713 0.72 -0.7 2,872,689 - CCNA_02713 0.72 +1.2 2,872,689 - CCNA_02713 0.72 -0.7 2,872,689 - CCNA_02713 0.72 -0.4 2,872,689 - CCNA_02713 0.72 +0.4 2,872,692 + CCNA_02713 0.72 +1.3 2,872,694 - CCNA_02713 0.72 -0.5 2,872,702 + CCNA_02713 0.73 +0.8 2,872,710 - CCNA_02713 0.74 -1.4 2,872,719 + CCNA_02713 0.74 +0.2 2,872,719 + CCNA_02713 0.74 +0.5 2,872,727 - CCNA_02713 0.75 -1.3 2,872,727 - CCNA_02713 0.75 +0.6 2,872,807 + CCNA_02713 0.81 +1.4 2,872,813 + CCNA_02713 0.82 +0.6 2,872,853 - CCNA_02713 0.85 +0.0 2,872,853 - CCNA_02713 0.85 +0.3 2,872,855 - CCNA_02713 0.85 -0.5 2,872,855 - CCNA_02713 0.85 +0.6 2,872,861 + CCNA_02713 0.86 +0.1 2,872,865 + CCNA_02713 0.86 +0.3 2,872,894 + CCNA_02713 0.88 -0.1 2,872,894 + CCNA_02713 0.88 +0.1 2,872,900 + CCNA_02713 0.89 +0.7 2,872,914 + -0.2 2,872,957 - -0.4 2,872,971 + +0.6 2,873,039 - -1.9 2,873,079 + -1.3 2,873,097 + +0.7 2,873,097 + +1.3 2,873,097 + +0.5 2,873,105 - +0.2 2,873,106 - -0.4 2,873,130 + +0.5 2,873,141 + -1.5 2,873,151 - +0.2 2,873,152 + +0.7 2,873,152 + -1.5 2,873,152 + -1.3 2,873,160 - -0.2 2,873,160 - +0.1 2,873,160 - -0.2 2,873,160 - -0.2 2,873,160 - -1.0 2,873,176 + -0.1 2,873,234 + +0.3 2,873,234 + +0.3 2,873,242 - +0.9 2,873,359 + CCNA_02714 0.11 +0.9 2,873,359 + CCNA_02714 0.11 +0.3 2,873,367 - CCNA_02714 0.12 +0.7 2,873,367 - CCNA_02714 0.12 -0.1 2,873,367 - CCNA_02714 0.12 -0.4 2,873,369 + CCNA_02714 0.12 +0.2 2,873,374 + CCNA_02714 0.12 -0.1 2,873,377 - CCNA_02714 0.12 -0.2 2,873,419 + CCNA_02714 0.14 -0.0 2,873,419 + CCNA_02714 0.14 -0.4 2,873,425 - CCNA_02714 0.15 -1.5 2,873,427 - CCNA_02714 0.15 -2.0 2,873,427 - CCNA_02714 0.15 -0.0 2,873,429 + CCNA_02714 0.15 +0.1 2,873,446 + CCNA_02714 0.16 +0.2 2,873,454 - CCNA_02714 0.16 -0.4 2,873,454 - CCNA_02714 0.16 -1.2 2,873,454 - CCNA_02714 0.16 -0.0 2,873,459 - CCNA_02714 0.17 +0.8 2,873,459 - CCNA_02714 0.17 -1.5 2,873,504 + CCNA_02714 0.19 +0.2 2,873,542 + CCNA_02714 0.21 +1.4 2,873,542 + CCNA_02714 0.21 -0.2 2,873,550 - CCNA_02714 0.22 +0.3 2,873,550 - CCNA_02714 0.22 +0.2 2,873,649 + CCNA_02714 0.27 +0.4 2,873,657 - CCNA_02714 0.27 -0.0 2,873,663 + CCNA_02714 0.28 +1.0 2,873,670 - CCNA_02714 0.28 +0.5 2,873,670 - CCNA_02714 0.28 +0.1 2,873,697 - CCNA_02714 0.30 +0.0 2,873,697 - CCNA_02714 0.30 -0.1 2,873,720 + CCNA_02714 0.31 +0.1 2,873,722 - CCNA_02714 0.31 -0.6 2,873,722 - CCNA_02714 0.31 -0.1 2,873,730 + CCNA_02714 0.31 +0.9 2,873,748 + CCNA_02714 0.32 +0.1 2,873,757 - CCNA_02714 0.33 +0.4 2,873,762 - CCNA_02714 0.33 -1.0 2,873,777 + CCNA_02714 0.34 +0.1 2,873,780 - CCNA_02714 0.34 +0.2 2,873,830 + CCNA_02714 0.37 +0.2 2,873,864 - CCNA_02714 0.39 +0.0 2,873,864 - CCNA_02714 0.39 -0.7 2,873,874 - CCNA_02714 0.39 -0.5 2,873,882 + CCNA_02714 0.40 +0.4 2,873,950 + CCNA_02714 0.44 -0.4 2,873,952 + CCNA_02714 0.44 -3.1 2,873,971 + CCNA_02714 0.45 +0.1 2,873,971 + CCNA_02714 0.45 +1.0 2,873,971 + CCNA_02714 0.45 +0.7 2,873,979 - CCNA_02714 0.45 -0.1 2,874,015 - CCNA_02714 0.47 -0.4
Or see this region's nucleotide sequence