Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02488 and CCNA_02489 overlap by 1 nucleotides CCNA_02489 and CCNA_02490 overlap by 4 nucleotides CCNA_02490 and CCNA_02491 are separated by 9 nucleotides CCNA_02491 and CCNA_02492 overlap by 8 nucleotides
CCNA_02488: CCNA_02488 - acetate/3-ketoacid CoA transferase, subunit A, at 2,636,384 to 2,637,121
_02488
CCNA_02489: CCNA_02489 - acetate/3-ketoacid CoA transferase, subunit B, at 2,637,121 to 2,637,768
_02489
CCNA_02490: CCNA_02490 - 3-ketoacyl-CoA thiolase, at 2,637,765 to 2,638,964
_02490
CCNA_02491: CCNA_02491 - protocatechuate 3,4-dioxygenase beta chain, at 2,638,974 to 2,639,681
_02491
CCNA_02492: CCNA_02492 - protocatechuate 3,4-dioxygenase alpha chain, at 2,639,674 to 2,640,324
_02492
Position (kb)
2637
2638
2639 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2636.785 kb on - strand, within CCNA_02488 at 2636.817 kb on + strand, within CCNA_02488 at 2636.825 kb on - strand, within CCNA_02488 at 2636.832 kb on + strand, within CCNA_02488 at 2636.844 kb on + strand, within CCNA_02488 at 2636.902 kb on + strand, within CCNA_02488 at 2636.950 kb on + strand, within CCNA_02488 at 2637.035 kb on - strand, within CCNA_02488 at 2637.092 kb on + strand at 2637.110 kb on - strand at 2637.122 kb on - strand at 2637.132 kb on - strand at 2637.203 kb on + strand, within CCNA_02489 at 2637.211 kb on - strand, within CCNA_02489 at 2637.243 kb on - strand, within CCNA_02489 at 2637.304 kb on + strand, within CCNA_02489 at 2637.305 kb on - strand, within CCNA_02489 at 2637.308 kb on + strand, within CCNA_02489 at 2637.308 kb on + strand, within CCNA_02489 at 2637.308 kb on + strand, within CCNA_02489 at 2637.308 kb on + strand, within CCNA_02489 at 2637.318 kb on + strand, within CCNA_02489 at 2637.318 kb on + strand, within CCNA_02489 at 2637.318 kb on + strand, within CCNA_02489 at 2637.326 kb on - strand, within CCNA_02489 at 2637.326 kb on - strand, within CCNA_02489 at 2637.326 kb on - strand, within CCNA_02489 at 2637.330 kb on + strand, within CCNA_02489 at 2637.334 kb on - strand, within CCNA_02489 at 2637.334 kb on - strand, within CCNA_02489 at 2637.355 kb on + strand, within CCNA_02489 at 2637.363 kb on - strand, within CCNA_02489 at 2637.364 kb on - strand, within CCNA_02489 at 2637.376 kb on + strand, within CCNA_02489 at 2637.376 kb on + strand, within CCNA_02489 at 2637.376 kb on + strand, within CCNA_02489 at 2637.384 kb on - strand, within CCNA_02489 at 2637.384 kb on - strand, within CCNA_02489 at 2637.421 kb on + strand, within CCNA_02489 at 2637.421 kb on + strand, within CCNA_02489 at 2637.442 kb on + strand, within CCNA_02489 at 2637.442 kb on + strand, within CCNA_02489 at 2637.442 kb on + strand, within CCNA_02489 at 2637.493 kb on + strand, within CCNA_02489 at 2637.506 kb on + strand, within CCNA_02489 at 2637.511 kb on + strand, within CCNA_02489 at 2637.513 kb on - strand, within CCNA_02489 at 2637.513 kb on - strand, within CCNA_02489 at 2637.576 kb on - strand, within CCNA_02489 at 2637.604 kb on - strand, within CCNA_02489 at 2637.609 kb on - strand, within CCNA_02489 at 2637.609 kb on - strand, within CCNA_02489 at 2637.643 kb on - strand, within CCNA_02489 at 2637.643 kb on - strand, within CCNA_02489 at 2637.705 kb on + strand at 2637.729 kb on - strand at 2638.302 kb on + strand, within CCNA_02490 at 2638.355 kb on - strand, within CCNA_02490 at 2638.381 kb on + strand, within CCNA_02490 at 2638.394 kb on - strand, within CCNA_02490 at 2638.589 kb on - strand, within CCNA_02490 at 2638.869 kb on - strand at 2638.903 kb on + strand at 2638.924 kb on + strand at 2638.968 kb on - strand at 2638.968 kb on - strand at 2639.036 kb on - strand at 2639.080 kb on + strand, within CCNA_02491 at 2639.080 kb on + strand, within CCNA_02491 at 2639.150 kb on + strand, within CCNA_02491 at 2639.158 kb on - strand, within CCNA_02491 at 2639.162 kb on + strand, within CCNA_02491 at 2639.162 kb on + strand, within CCNA_02491 at 2639.162 kb on + strand, within CCNA_02491 at 2639.162 kb on + strand, within CCNA_02491 at 2639.170 kb on - strand, within CCNA_02491 at 2639.170 kb on - strand, within CCNA_02491 at 2639.170 kb on - strand, within CCNA_02491 at 2639.170 kb on - strand, within CCNA_02491 at 2639.170 kb on - strand, within CCNA_02491 at 2639.170 kb on - strand, within CCNA_02491 at 2639.170 kb on - strand, within CCNA_02491 at 2639.175 kb on + strand, within CCNA_02491 at 2639.182 kb on - strand, within CCNA_02491 at 2639.232 kb on + strand, within CCNA_02491 at 2639.232 kb on + strand, within CCNA_02491 at 2639.240 kb on - strand, within CCNA_02491 at 2639.240 kb on - strand, within CCNA_02491 at 2639.240 kb on - strand, within CCNA_02491 at 2639.240 kb on - strand, within CCNA_02491 at 2639.242 kb on - strand, within CCNA_02491 at 2639.261 kb on + strand, within CCNA_02491 at 2639.290 kb on + strand, within CCNA_02491 at 2639.316 kb on - strand, within CCNA_02491 at 2639.392 kb on + strand, within CCNA_02491 at 2639.441 kb on - strand, within CCNA_02491 at 2639.457 kb on + strand, within CCNA_02491 at 2639.465 kb on - strand, within CCNA_02491 at 2639.484 kb on + strand, within CCNA_02491 at 2639.544 kb on + strand, within CCNA_02491 at 2639.544 kb on + strand, within CCNA_02491 at 2639.544 kb on + strand, within CCNA_02491 at 2639.562 kb on + strand, within CCNA_02491 at 2639.607 kb on + strand, within CCNA_02491 at 2639.612 kb on + strand at 2639.641 kb on + strand at 2639.649 kb on - strand at 2639.649 kb on - strand at 2639.711 kb on + strand at 2639.729 kb on - strand at 2639.730 kb on - strand at 2639.768 kb on + strand, within CCNA_02492 at 2639.776 kb on - strand, within CCNA_02492 at 2639.786 kb on - strand, within CCNA_02492 at 2639.792 kb on + strand, within CCNA_02492 at 2639.800 kb on - strand, within CCNA_02492 at 2639.802 kb on + strand, within CCNA_02492 at 2639.838 kb on + strand, within CCNA_02492 at 2639.846 kb on - strand, within CCNA_02492 at 2639.846 kb on - strand, within CCNA_02492 at 2639.850 kb on + strand, within CCNA_02492 at 2639.857 kb on + strand, within CCNA_02492 at 2639.857 kb on + strand, within CCNA_02492 at 2639.857 kb on + strand, within CCNA_02492 at 2639.857 kb on + strand, within CCNA_02492 at 2639.865 kb on - strand, within CCNA_02492 at 2639.865 kb on - strand, within CCNA_02492 at 2639.865 kb on - strand, within CCNA_02492 at 2639.872 kb on + strand, within CCNA_02492 at 2639.920 kb on + strand, within CCNA_02492 at 2639.920 kb on + strand, within CCNA_02492 at 2639.920 kb on + strand, within CCNA_02492 at 2639.920 kb on + strand, within CCNA_02492 at 2639.928 kb on - strand, within CCNA_02492 at 2639.934 kb on + strand, within CCNA_02492 at 2639.948 kb on - strand, within CCNA_02492 at 2639.959 kb on + strand, within CCNA_02492
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 2,636,785 - CCNA_02488 0.54 -1.3 2,636,817 + CCNA_02488 0.59 -1.0 2,636,825 - CCNA_02488 0.60 -1.8 2,636,832 + CCNA_02488 0.61 -0.6 2,636,844 + CCNA_02488 0.62 -0.2 2,636,902 + CCNA_02488 0.70 -0.5 2,636,950 + CCNA_02488 0.77 -2.6 2,637,035 - CCNA_02488 0.88 +0.2 2,637,092 + -1.5 2,637,110 - +2.2 2,637,122 - -0.9 2,637,132 - -0.5 2,637,203 + CCNA_02489 0.13 +1.2 2,637,211 - CCNA_02489 0.14 +0.6 2,637,243 - CCNA_02489 0.19 +1.1 2,637,304 + CCNA_02489 0.28 -1.0 2,637,305 - CCNA_02489 0.28 -0.0 2,637,308 + CCNA_02489 0.29 +0.6 2,637,308 + CCNA_02489 0.29 +0.2 2,637,308 + CCNA_02489 0.29 -0.7 2,637,308 + CCNA_02489 0.29 +0.7 2,637,318 + CCNA_02489 0.30 -0.3 2,637,318 + CCNA_02489 0.30 -0.6 2,637,318 + CCNA_02489 0.30 +0.7 2,637,326 - CCNA_02489 0.32 -0.4 2,637,326 - CCNA_02489 0.32 -2.2 2,637,326 - CCNA_02489 0.32 -1.0 2,637,330 + CCNA_02489 0.32 +0.2 2,637,334 - CCNA_02489 0.33 -1.0 2,637,334 - CCNA_02489 0.33 -0.2 2,637,355 + CCNA_02489 0.36 -1.5 2,637,363 - CCNA_02489 0.37 -0.2 2,637,364 - CCNA_02489 0.38 -0.5 2,637,376 + CCNA_02489 0.39 +1.6 2,637,376 + CCNA_02489 0.39 -0.6 2,637,376 + CCNA_02489 0.39 -0.8 2,637,384 - CCNA_02489 0.41 -1.8 2,637,384 - CCNA_02489 0.41 -0.6 2,637,421 + CCNA_02489 0.46 +0.1 2,637,421 + CCNA_02489 0.46 -0.2 2,637,442 + CCNA_02489 0.50 -0.1 2,637,442 + CCNA_02489 0.50 +0.5 2,637,442 + CCNA_02489 0.50 +0.0 2,637,493 + CCNA_02489 0.57 -0.1 2,637,506 + CCNA_02489 0.59 +1.0 2,637,511 + CCNA_02489 0.60 +0.2 2,637,513 - CCNA_02489 0.60 +0.8 2,637,513 - CCNA_02489 0.60 -0.9 2,637,576 - CCNA_02489 0.70 +0.6 2,637,604 - CCNA_02489 0.75 -1.0 2,637,609 - CCNA_02489 0.75 -1.2 2,637,609 - CCNA_02489 0.75 -0.8 2,637,643 - CCNA_02489 0.81 -0.6 2,637,643 - CCNA_02489 0.81 +0.7 2,637,705 + -0.6 2,637,729 - -0.3 2,638,302 + CCNA_02490 0.45 -1.2 2,638,355 - CCNA_02490 0.49 -0.9 2,638,381 + CCNA_02490 0.51 +0.4 2,638,394 - CCNA_02490 0.52 -1.3 2,638,589 - CCNA_02490 0.69 -1.6 2,638,869 - -1.6 2,638,903 + +0.7 2,638,924 + -0.7 2,638,968 - -0.4 2,638,968 - -0.5 2,639,036 - +0.6 2,639,080 + CCNA_02491 0.15 -0.2 2,639,080 + CCNA_02491 0.15 -0.3 2,639,150 + CCNA_02491 0.25 -0.1 2,639,158 - CCNA_02491 0.26 -0.3 2,639,162 + CCNA_02491 0.27 +0.0 2,639,162 + CCNA_02491 0.27 +1.6 2,639,162 + CCNA_02491 0.27 -0.6 2,639,162 + CCNA_02491 0.27 +1.1 2,639,170 - CCNA_02491 0.28 -0.5 2,639,170 - CCNA_02491 0.28 -0.6 2,639,170 - CCNA_02491 0.28 -1.0 2,639,170 - CCNA_02491 0.28 +0.2 2,639,170 - CCNA_02491 0.28 -1.1 2,639,170 - CCNA_02491 0.28 +0.1 2,639,170 - CCNA_02491 0.28 -0.4 2,639,175 + CCNA_02491 0.28 -2.2 2,639,182 - CCNA_02491 0.29 -0.6 2,639,232 + CCNA_02491 0.36 +0.4 2,639,232 + CCNA_02491 0.36 -1.0 2,639,240 - CCNA_02491 0.38 +1.0 2,639,240 - CCNA_02491 0.38 -0.9 2,639,240 - CCNA_02491 0.38 +0.1 2,639,240 - CCNA_02491 0.38 -0.5 2,639,242 - CCNA_02491 0.38 -0.8 2,639,261 + CCNA_02491 0.41 +0.9 2,639,290 + CCNA_02491 0.45 +0.2 2,639,316 - CCNA_02491 0.48 -1.5 2,639,392 + CCNA_02491 0.59 +0.1 2,639,441 - CCNA_02491 0.66 -0.6 2,639,457 + CCNA_02491 0.68 -1.2 2,639,465 - CCNA_02491 0.69 -0.3 2,639,484 + CCNA_02491 0.72 -1.0 2,639,544 + CCNA_02491 0.81 -1.1 2,639,544 + CCNA_02491 0.81 +0.1 2,639,544 + CCNA_02491 0.81 -0.4 2,639,562 + CCNA_02491 0.83 -0.6 2,639,607 + CCNA_02491 0.89 -0.8 2,639,612 + -0.7 2,639,641 + +0.1 2,639,649 - +0.4 2,639,649 - -0.7 2,639,711 + +0.2 2,639,729 - -0.6 2,639,730 - -0.6 2,639,768 + CCNA_02492 0.14 +0.5 2,639,776 - CCNA_02492 0.16 +1.0 2,639,786 - CCNA_02492 0.17 +0.1 2,639,792 + CCNA_02492 0.18 +0.2 2,639,800 - CCNA_02492 0.19 +0.5 2,639,802 + CCNA_02492 0.20 +0.6 2,639,838 + CCNA_02492 0.25 +0.1 2,639,846 - CCNA_02492 0.26 -0.6 2,639,846 - CCNA_02492 0.26 +0.2 2,639,850 + CCNA_02492 0.27 -0.4 2,639,857 + CCNA_02492 0.28 -0.6 2,639,857 + CCNA_02492 0.28 +0.3 2,639,857 + CCNA_02492 0.28 -1.1 2,639,857 + CCNA_02492 0.28 -0.3 2,639,865 - CCNA_02492 0.29 +1.0 2,639,865 - CCNA_02492 0.29 +0.4 2,639,865 - CCNA_02492 0.29 +0.2 2,639,872 + CCNA_02492 0.30 -0.2 2,639,920 + CCNA_02492 0.38 -0.0 2,639,920 + CCNA_02492 0.38 +0.9 2,639,920 + CCNA_02492 0.38 -0.6 2,639,920 + CCNA_02492 0.38 +0.0 2,639,928 - CCNA_02492 0.39 -0.7 2,639,934 + CCNA_02492 0.40 +0.5 2,639,948 - CCNA_02492 0.42 +0.1 2,639,959 + CCNA_02492 0.44 -0.4
Or see this region's nucleotide sequence