Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02490

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02488 and CCNA_02489 overlap by 1 nucleotidesCCNA_02489 and CCNA_02490 overlap by 4 nucleotidesCCNA_02490 and CCNA_02491 are separated by 9 nucleotidesCCNA_02491 and CCNA_02492 overlap by 8 nucleotides CCNA_02488: CCNA_02488 - acetate/3-ketoacid CoA transferase, subunit A, at 2,636,384 to 2,637,121 _02488 CCNA_02489: CCNA_02489 - acetate/3-ketoacid CoA transferase, subunit B, at 2,637,121 to 2,637,768 _02489 CCNA_02490: CCNA_02490 - 3-ketoacyl-CoA thiolase, at 2,637,765 to 2,638,964 _02490 CCNA_02491: CCNA_02491 - protocatechuate 3,4-dioxygenase beta chain, at 2,638,974 to 2,639,681 _02491 CCNA_02492: CCNA_02492 - protocatechuate 3,4-dioxygenase alpha chain, at 2,639,674 to 2,640,324 _02492 Position (kb) 2637 2638 2639Strain fitness (log2 ratio) -2 -1 0 1 2at 2636.785 kb on - strand, within CCNA_02488at 2636.817 kb on + strand, within CCNA_02488at 2636.825 kb on - strand, within CCNA_02488at 2636.832 kb on + strand, within CCNA_02488at 2636.844 kb on + strand, within CCNA_02488at 2636.902 kb on + strand, within CCNA_02488at 2636.950 kb on + strand, within CCNA_02488at 2637.035 kb on - strand, within CCNA_02488at 2637.092 kb on + strandat 2637.110 kb on - strandat 2637.122 kb on - strandat 2637.132 kb on - strandat 2637.203 kb on + strand, within CCNA_02489at 2637.211 kb on - strand, within CCNA_02489at 2637.243 kb on - strand, within CCNA_02489at 2637.304 kb on + strand, within CCNA_02489at 2637.305 kb on - strand, within CCNA_02489at 2637.308 kb on + strand, within CCNA_02489at 2637.308 kb on + strand, within CCNA_02489at 2637.308 kb on + strand, within CCNA_02489at 2637.308 kb on + strand, within CCNA_02489at 2637.318 kb on + strand, within CCNA_02489at 2637.318 kb on + strand, within CCNA_02489at 2637.318 kb on + strand, within CCNA_02489at 2637.326 kb on - strand, within CCNA_02489at 2637.326 kb on - strand, within CCNA_02489at 2637.326 kb on - strand, within CCNA_02489at 2637.330 kb on + strand, within CCNA_02489at 2637.334 kb on - strand, within CCNA_02489at 2637.334 kb on - strand, within CCNA_02489at 2637.355 kb on + strand, within CCNA_02489at 2637.363 kb on - strand, within CCNA_02489at 2637.364 kb on - strand, within CCNA_02489at 2637.376 kb on + strand, within CCNA_02489at 2637.376 kb on + strand, within CCNA_02489at 2637.376 kb on + strand, within CCNA_02489at 2637.384 kb on - strand, within CCNA_02489at 2637.384 kb on - strand, within CCNA_02489at 2637.421 kb on + strand, within CCNA_02489at 2637.421 kb on + strand, within CCNA_02489at 2637.442 kb on + strand, within CCNA_02489at 2637.442 kb on + strand, within CCNA_02489at 2637.442 kb on + strand, within CCNA_02489at 2637.493 kb on + strand, within CCNA_02489at 2637.506 kb on + strand, within CCNA_02489at 2637.511 kb on + strand, within CCNA_02489at 2637.513 kb on - strand, within CCNA_02489at 2637.513 kb on - strand, within CCNA_02489at 2637.576 kb on - strand, within CCNA_02489at 2637.604 kb on - strand, within CCNA_02489at 2637.609 kb on - strand, within CCNA_02489at 2637.609 kb on - strand, within CCNA_02489at 2637.643 kb on - strand, within CCNA_02489at 2637.643 kb on - strand, within CCNA_02489at 2637.705 kb on + strandat 2637.729 kb on - strandat 2638.302 kb on + strand, within CCNA_02490at 2638.355 kb on - strand, within CCNA_02490at 2638.381 kb on + strand, within CCNA_02490at 2638.394 kb on - strand, within CCNA_02490at 2638.589 kb on - strand, within CCNA_02490at 2638.869 kb on - strandat 2638.903 kb on + strandat 2638.924 kb on + strandat 2638.968 kb on - strandat 2638.968 kb on - strandat 2639.036 kb on - strandat 2639.080 kb on + strand, within CCNA_02491at 2639.080 kb on + strand, within CCNA_02491at 2639.150 kb on + strand, within CCNA_02491at 2639.158 kb on - strand, within CCNA_02491at 2639.162 kb on + strand, within CCNA_02491at 2639.162 kb on + strand, within CCNA_02491at 2639.162 kb on + strand, within CCNA_02491at 2639.162 kb on + strand, within CCNA_02491at 2639.170 kb on - strand, within CCNA_02491at 2639.170 kb on - strand, within CCNA_02491at 2639.170 kb on - strand, within CCNA_02491at 2639.170 kb on - strand, within CCNA_02491at 2639.170 kb on - strand, within CCNA_02491at 2639.170 kb on - strand, within CCNA_02491at 2639.170 kb on - strand, within CCNA_02491at 2639.175 kb on + strand, within CCNA_02491at 2639.182 kb on - strand, within CCNA_02491at 2639.232 kb on + strand, within CCNA_02491at 2639.232 kb on + strand, within CCNA_02491at 2639.240 kb on - strand, within CCNA_02491at 2639.240 kb on - strand, within CCNA_02491at 2639.240 kb on - strand, within CCNA_02491at 2639.240 kb on - strand, within CCNA_02491at 2639.242 kb on - strand, within CCNA_02491at 2639.261 kb on + strand, within CCNA_02491at 2639.290 kb on + strand, within CCNA_02491at 2639.316 kb on - strand, within CCNA_02491at 2639.392 kb on + strand, within CCNA_02491at 2639.441 kb on - strand, within CCNA_02491at 2639.457 kb on + strand, within CCNA_02491at 2639.465 kb on - strand, within CCNA_02491at 2639.484 kb on + strand, within CCNA_02491at 2639.544 kb on + strand, within CCNA_02491at 2639.544 kb on + strand, within CCNA_02491at 2639.544 kb on + strand, within CCNA_02491at 2639.562 kb on + strand, within CCNA_02491at 2639.607 kb on + strand, within CCNA_02491at 2639.612 kb on + strandat 2639.641 kb on + strandat 2639.649 kb on - strandat 2639.649 kb on - strandat 2639.711 kb on + strandat 2639.729 kb on - strandat 2639.730 kb on - strandat 2639.768 kb on + strand, within CCNA_02492at 2639.776 kb on - strand, within CCNA_02492at 2639.786 kb on - strand, within CCNA_02492at 2639.792 kb on + strand, within CCNA_02492at 2639.800 kb on - strand, within CCNA_02492at 2639.802 kb on + strand, within CCNA_02492at 2639.838 kb on + strand, within CCNA_02492at 2639.846 kb on - strand, within CCNA_02492at 2639.846 kb on - strand, within CCNA_02492at 2639.850 kb on + strand, within CCNA_02492at 2639.857 kb on + strand, within CCNA_02492at 2639.857 kb on + strand, within CCNA_02492at 2639.857 kb on + strand, within CCNA_02492at 2639.857 kb on + strand, within CCNA_02492at 2639.865 kb on - strand, within CCNA_02492at 2639.865 kb on - strand, within CCNA_02492at 2639.865 kb on - strand, within CCNA_02492at 2639.872 kb on + strand, within CCNA_02492at 2639.920 kb on + strand, within CCNA_02492at 2639.920 kb on + strand, within CCNA_02492at 2639.920 kb on + strand, within CCNA_02492at 2639.920 kb on + strand, within CCNA_02492at 2639.928 kb on - strand, within CCNA_02492at 2639.934 kb on + strand, within CCNA_02492at 2639.948 kb on - strand, within CCNA_02492at 2639.959 kb on + strand, within CCNA_02492

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
remove
2,636,785 - CCNA_02488 0.54 -1.3
2,636,817 + CCNA_02488 0.59 -1.0
2,636,825 - CCNA_02488 0.60 -1.8
2,636,832 + CCNA_02488 0.61 -0.6
2,636,844 + CCNA_02488 0.62 -0.2
2,636,902 + CCNA_02488 0.70 -0.5
2,636,950 + CCNA_02488 0.77 -2.6
2,637,035 - CCNA_02488 0.88 +0.2
2,637,092 + -1.5
2,637,110 - +2.2
2,637,122 - -0.9
2,637,132 - -0.5
2,637,203 + CCNA_02489 0.13 +1.2
2,637,211 - CCNA_02489 0.14 +0.6
2,637,243 - CCNA_02489 0.19 +1.1
2,637,304 + CCNA_02489 0.28 -1.0
2,637,305 - CCNA_02489 0.28 -0.0
2,637,308 + CCNA_02489 0.29 +0.6
2,637,308 + CCNA_02489 0.29 +0.2
2,637,308 + CCNA_02489 0.29 -0.7
2,637,308 + CCNA_02489 0.29 +0.7
2,637,318 + CCNA_02489 0.30 -0.3
2,637,318 + CCNA_02489 0.30 -0.6
2,637,318 + CCNA_02489 0.30 +0.7
2,637,326 - CCNA_02489 0.32 -0.4
2,637,326 - CCNA_02489 0.32 -2.2
2,637,326 - CCNA_02489 0.32 -1.0
2,637,330 + CCNA_02489 0.32 +0.2
2,637,334 - CCNA_02489 0.33 -1.0
2,637,334 - CCNA_02489 0.33 -0.2
2,637,355 + CCNA_02489 0.36 -1.5
2,637,363 - CCNA_02489 0.37 -0.2
2,637,364 - CCNA_02489 0.38 -0.5
2,637,376 + CCNA_02489 0.39 +1.6
2,637,376 + CCNA_02489 0.39 -0.6
2,637,376 + CCNA_02489 0.39 -0.8
2,637,384 - CCNA_02489 0.41 -1.8
2,637,384 - CCNA_02489 0.41 -0.6
2,637,421 + CCNA_02489 0.46 +0.1
2,637,421 + CCNA_02489 0.46 -0.2
2,637,442 + CCNA_02489 0.50 -0.1
2,637,442 + CCNA_02489 0.50 +0.5
2,637,442 + CCNA_02489 0.50 +0.0
2,637,493 + CCNA_02489 0.57 -0.1
2,637,506 + CCNA_02489 0.59 +1.0
2,637,511 + CCNA_02489 0.60 +0.2
2,637,513 - CCNA_02489 0.60 +0.8
2,637,513 - CCNA_02489 0.60 -0.9
2,637,576 - CCNA_02489 0.70 +0.6
2,637,604 - CCNA_02489 0.75 -1.0
2,637,609 - CCNA_02489 0.75 -1.2
2,637,609 - CCNA_02489 0.75 -0.8
2,637,643 - CCNA_02489 0.81 -0.6
2,637,643 - CCNA_02489 0.81 +0.7
2,637,705 + -0.6
2,637,729 - -0.3
2,638,302 + CCNA_02490 0.45 -1.2
2,638,355 - CCNA_02490 0.49 -0.9
2,638,381 + CCNA_02490 0.51 +0.4
2,638,394 - CCNA_02490 0.52 -1.3
2,638,589 - CCNA_02490 0.69 -1.6
2,638,869 - -1.6
2,638,903 + +0.7
2,638,924 + -0.7
2,638,968 - -0.4
2,638,968 - -0.5
2,639,036 - +0.6
2,639,080 + CCNA_02491 0.15 -0.2
2,639,080 + CCNA_02491 0.15 -0.3
2,639,150 + CCNA_02491 0.25 -0.1
2,639,158 - CCNA_02491 0.26 -0.3
2,639,162 + CCNA_02491 0.27 +0.0
2,639,162 + CCNA_02491 0.27 +1.6
2,639,162 + CCNA_02491 0.27 -0.6
2,639,162 + CCNA_02491 0.27 +1.1
2,639,170 - CCNA_02491 0.28 -0.5
2,639,170 - CCNA_02491 0.28 -0.6
2,639,170 - CCNA_02491 0.28 -1.0
2,639,170 - CCNA_02491 0.28 +0.2
2,639,170 - CCNA_02491 0.28 -1.1
2,639,170 - CCNA_02491 0.28 +0.1
2,639,170 - CCNA_02491 0.28 -0.4
2,639,175 + CCNA_02491 0.28 -2.2
2,639,182 - CCNA_02491 0.29 -0.6
2,639,232 + CCNA_02491 0.36 +0.4
2,639,232 + CCNA_02491 0.36 -1.0
2,639,240 - CCNA_02491 0.38 +1.0
2,639,240 - CCNA_02491 0.38 -0.9
2,639,240 - CCNA_02491 0.38 +0.1
2,639,240 - CCNA_02491 0.38 -0.5
2,639,242 - CCNA_02491 0.38 -0.8
2,639,261 + CCNA_02491 0.41 +0.9
2,639,290 + CCNA_02491 0.45 +0.2
2,639,316 - CCNA_02491 0.48 -1.5
2,639,392 + CCNA_02491 0.59 +0.1
2,639,441 - CCNA_02491 0.66 -0.6
2,639,457 + CCNA_02491 0.68 -1.2
2,639,465 - CCNA_02491 0.69 -0.3
2,639,484 + CCNA_02491 0.72 -1.0
2,639,544 + CCNA_02491 0.81 -1.1
2,639,544 + CCNA_02491 0.81 +0.1
2,639,544 + CCNA_02491 0.81 -0.4
2,639,562 + CCNA_02491 0.83 -0.6
2,639,607 + CCNA_02491 0.89 -0.8
2,639,612 + -0.7
2,639,641 + +0.1
2,639,649 - +0.4
2,639,649 - -0.7
2,639,711 + +0.2
2,639,729 - -0.6
2,639,730 - -0.6
2,639,768 + CCNA_02492 0.14 +0.5
2,639,776 - CCNA_02492 0.16 +1.0
2,639,786 - CCNA_02492 0.17 +0.1
2,639,792 + CCNA_02492 0.18 +0.2
2,639,800 - CCNA_02492 0.19 +0.5
2,639,802 + CCNA_02492 0.20 +0.6
2,639,838 + CCNA_02492 0.25 +0.1
2,639,846 - CCNA_02492 0.26 -0.6
2,639,846 - CCNA_02492 0.26 +0.2
2,639,850 + CCNA_02492 0.27 -0.4
2,639,857 + CCNA_02492 0.28 -0.6
2,639,857 + CCNA_02492 0.28 +0.3
2,639,857 + CCNA_02492 0.28 -1.1
2,639,857 + CCNA_02492 0.28 -0.3
2,639,865 - CCNA_02492 0.29 +1.0
2,639,865 - CCNA_02492 0.29 +0.4
2,639,865 - CCNA_02492 0.29 +0.2
2,639,872 + CCNA_02492 0.30 -0.2
2,639,920 + CCNA_02492 0.38 -0.0
2,639,920 + CCNA_02492 0.38 +0.9
2,639,920 + CCNA_02492 0.38 -0.6
2,639,920 + CCNA_02492 0.38 +0.0
2,639,928 - CCNA_02492 0.39 -0.7
2,639,934 + CCNA_02492 0.40 +0.5
2,639,948 - CCNA_02492 0.42 +0.1
2,639,959 + CCNA_02492 0.44 -0.4

Or see this region's nucleotide sequence