Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02346 and CCNA_02347 are separated by 99 nucleotides CCNA_02347 and CCNA_02348 are separated by 79 nucleotides CCNA_02348 and CCNA_02349 are separated by 133 nucleotides
CCNA_02346: CCNA_02346 - arabinose-5-phosphate isomerase, at 2,485,222 to 2,486,178
_02346
CCNA_02347: CCNA_02347 - phosphomannomutase/phosphoglucomutase, at 2,486,278 to 2,487,774
_02347
CCNA_02348: CCNA_02348 - acetyltransferase, GNAT family, at 2,487,854 to 2,488,291
_02348
CCNA_02349: CCNA_02349 - nucleoside phosphorylase, at 2,488,425 to 2,489,324
_02349
Position (kb)
2486
2487
2488 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2485.346 kb on - strand, within CCNA_02346 at 2485.369 kb on + strand, within CCNA_02346 at 2485.459 kb on - strand, within CCNA_02346 at 2485.512 kb on + strand, within CCNA_02346 at 2485.520 kb on - strand, within CCNA_02346 at 2485.631 kb on + strand, within CCNA_02346 at 2485.767 kb on + strand, within CCNA_02346 at 2485.782 kb on + strand, within CCNA_02346 at 2485.799 kb on + strand, within CCNA_02346 at 2485.824 kb on + strand, within CCNA_02346 at 2485.835 kb on + strand, within CCNA_02346 at 2485.857 kb on - strand, within CCNA_02346 at 2486.032 kb on + strand, within CCNA_02346 at 2486.040 kb on - strand, within CCNA_02346 at 2486.040 kb on - strand, within CCNA_02346 at 2486.040 kb on - strand, within CCNA_02346 at 2486.162 kb on + strand at 2486.172 kb on + strand at 2486.241 kb on + strand at 2486.241 kb on + strand at 2486.241 kb on + strand at 2486.245 kb on + strand at 2486.248 kb on - strand at 2486.248 kb on - strand at 2486.249 kb on - strand at 2486.249 kb on - strand at 2486.254 kb on - strand at 2486.281 kb on - strand at 2486.289 kb on + strand at 2486.335 kb on + strand at 2486.348 kb on - strand at 2486.394 kb on + strand at 2486.396 kb on + strand at 2486.417 kb on + strand at 2486.425 kb on - strand at 2486.493 kb on + strand, within CCNA_02347 at 2486.532 kb on + strand, within CCNA_02347 at 2486.535 kb on - strand, within CCNA_02347 at 2486.537 kb on + strand, within CCNA_02347 at 2486.540 kb on - strand, within CCNA_02347 at 2486.543 kb on + strand, within CCNA_02347 at 2486.558 kb on + strand, within CCNA_02347 at 2486.558 kb on + strand, within CCNA_02347 at 2486.559 kb on - strand, within CCNA_02347 at 2486.596 kb on - strand, within CCNA_02347 at 2486.628 kb on + strand, within CCNA_02347 at 2486.662 kb on + strand, within CCNA_02347 at 2486.718 kb on + strand, within CCNA_02347 at 2486.718 kb on + strand, within CCNA_02347 at 2486.726 kb on - strand, within CCNA_02347 at 2486.762 kb on + strand, within CCNA_02347 at 2486.784 kb on + strand, within CCNA_02347 at 2486.792 kb on - strand, within CCNA_02347 at 2486.889 kb on + strand, within CCNA_02347 at 2486.922 kb on + strand, within CCNA_02347 at 2486.972 kb on - strand, within CCNA_02347 at 2487.042 kb on - strand, within CCNA_02347 at 2487.146 kb on + strand, within CCNA_02347 at 2487.212 kb on + strand, within CCNA_02347 at 2487.235 kb on - strand, within CCNA_02347 at 2487.243 kb on - strand, within CCNA_02347 at 2487.278 kb on + strand, within CCNA_02347 at 2487.281 kb on - strand, within CCNA_02347 at 2487.291 kb on - strand, within CCNA_02347 at 2487.349 kb on + strand, within CCNA_02347 at 2487.350 kb on - strand, within CCNA_02347 at 2487.369 kb on - strand, within CCNA_02347 at 2487.389 kb on - strand, within CCNA_02347 at 2487.437 kb on - strand, within CCNA_02347 at 2487.448 kb on + strand, within CCNA_02347 at 2487.458 kb on + strand, within CCNA_02347 at 2487.464 kb on + strand, within CCNA_02347 at 2487.477 kb on - strand, within CCNA_02347 at 2487.487 kb on - strand, within CCNA_02347 at 2487.498 kb on - strand, within CCNA_02347 at 2487.628 kb on + strand at 2487.681 kb on - strand at 2487.723 kb on + strand at 2487.785 kb on - strand at 2487.792 kb on + strand at 2487.838 kb on + strand at 2487.839 kb on - strand at 2487.864 kb on - strand at 2487.888 kb on + strand at 2487.895 kb on + strand at 2487.895 kb on - strand at 2487.903 kb on - strand, within CCNA_02348 at 2487.912 kb on - strand, within CCNA_02348 at 2487.953 kb on - strand, within CCNA_02348 at 2487.977 kb on + strand, within CCNA_02348 at 2487.986 kb on + strand, within CCNA_02348 at 2488.009 kb on - strand, within CCNA_02348 at 2488.009 kb on - strand, within CCNA_02348 at 2488.041 kb on + strand, within CCNA_02348 at 2488.041 kb on + strand, within CCNA_02348 at 2488.049 kb on - strand, within CCNA_02348 at 2488.051 kb on + strand, within CCNA_02348 at 2488.059 kb on - strand, within CCNA_02348 at 2488.086 kb on - strand, within CCNA_02348 at 2488.096 kb on + strand, within CCNA_02348 at 2488.121 kb on - strand, within CCNA_02348 at 2488.136 kb on - strand, within CCNA_02348 at 2488.211 kb on + strand, within CCNA_02348 at 2488.228 kb on - strand, within CCNA_02348 at 2488.239 kb on + strand, within CCNA_02348 at 2488.291 kb on + strand at 2488.291 kb on + strand at 2488.296 kb on + strand at 2488.299 kb on - strand at 2488.361 kb on + strand at 2488.368 kb on - strand at 2488.368 kb on - strand at 2488.368 kb on - strand at 2488.369 kb on - strand at 2488.411 kb on - strand at 2488.477 kb on + strand at 2488.485 kb on - strand at 2488.566 kb on + strand, within CCNA_02349 at 2488.591 kb on - strand, within CCNA_02349 at 2488.598 kb on + strand, within CCNA_02349 at 2488.598 kb on + strand, within CCNA_02349 at 2488.606 kb on - strand, within CCNA_02349 at 2488.621 kb on - strand, within CCNA_02349 at 2488.645 kb on - strand, within CCNA_02349 at 2488.648 kb on + strand, within CCNA_02349 at 2488.668 kb on + strand, within CCNA_02349 at 2488.671 kb on - strand, within CCNA_02349 at 2488.710 kb on - strand, within CCNA_02349
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 2,485,346 - CCNA_02346 0.13 +0.1 2,485,369 + CCNA_02346 0.15 +0.2 2,485,459 - CCNA_02346 0.25 +0.2 2,485,512 + CCNA_02346 0.30 +0.6 2,485,520 - CCNA_02346 0.31 -1.6 2,485,631 + CCNA_02346 0.43 -1.2 2,485,767 + CCNA_02346 0.57 -1.3 2,485,782 + CCNA_02346 0.59 -1.9 2,485,799 + CCNA_02346 0.60 -1.2 2,485,824 + CCNA_02346 0.63 +0.2 2,485,835 + CCNA_02346 0.64 +0.1 2,485,857 - CCNA_02346 0.66 -1.2 2,486,032 + CCNA_02346 0.85 -1.8 2,486,040 - CCNA_02346 0.85 -2.2 2,486,040 - CCNA_02346 0.85 -0.3 2,486,040 - CCNA_02346 0.85 -1.5 2,486,162 + -0.1 2,486,172 + +0.3 2,486,241 + +0.3 2,486,241 + -0.0 2,486,241 + +0.1 2,486,245 + +0.7 2,486,248 - -1.4 2,486,248 - -0.3 2,486,249 - -0.9 2,486,249 - -1.0 2,486,254 - +0.2 2,486,281 - -1.2 2,486,289 + -0.3 2,486,335 + +0.1 2,486,348 - +0.0 2,486,394 + +0.2 2,486,396 + -0.4 2,486,417 + -0.7 2,486,425 - -1.4 2,486,493 + CCNA_02347 0.14 -0.3 2,486,532 + CCNA_02347 0.17 +0.3 2,486,535 - CCNA_02347 0.17 -1.4 2,486,537 + CCNA_02347 0.17 -0.9 2,486,540 - CCNA_02347 0.18 -2.1 2,486,543 + CCNA_02347 0.18 -0.8 2,486,558 + CCNA_02347 0.19 -0.9 2,486,558 + CCNA_02347 0.19 -0.1 2,486,559 - CCNA_02347 0.19 -0.3 2,486,596 - CCNA_02347 0.21 -1.6 2,486,628 + CCNA_02347 0.23 +1.2 2,486,662 + CCNA_02347 0.26 -0.1 2,486,718 + CCNA_02347 0.29 +0.5 2,486,718 + CCNA_02347 0.29 -0.9 2,486,726 - CCNA_02347 0.30 -2.6 2,486,762 + CCNA_02347 0.32 +0.5 2,486,784 + CCNA_02347 0.34 -0.9 2,486,792 - CCNA_02347 0.34 -1.1 2,486,889 + CCNA_02347 0.41 +0.4 2,486,922 + CCNA_02347 0.43 -0.4 2,486,972 - CCNA_02347 0.46 -1.3 2,487,042 - CCNA_02347 0.51 -1.3 2,487,146 + CCNA_02347 0.58 -0.3 2,487,212 + CCNA_02347 0.62 -1.7 2,487,235 - CCNA_02347 0.64 -0.9 2,487,243 - CCNA_02347 0.64 -1.9 2,487,278 + CCNA_02347 0.67 +0.8 2,487,281 - CCNA_02347 0.67 -1.2 2,487,291 - CCNA_02347 0.68 -0.8 2,487,349 + CCNA_02347 0.72 -1.3 2,487,350 - CCNA_02347 0.72 -1.2 2,487,369 - CCNA_02347 0.73 +0.3 2,487,389 - CCNA_02347 0.74 -0.4 2,487,437 - CCNA_02347 0.77 -0.6 2,487,448 + CCNA_02347 0.78 +0.2 2,487,458 + CCNA_02347 0.79 -0.2 2,487,464 + CCNA_02347 0.79 +2.1 2,487,477 - CCNA_02347 0.80 -0.8 2,487,487 - CCNA_02347 0.81 -0.5 2,487,498 - CCNA_02347 0.81 -1.8 2,487,628 + +0.8 2,487,681 - -1.6 2,487,723 + -0.5 2,487,785 - -2.0 2,487,792 + +0.2 2,487,838 + +0.5 2,487,839 - -0.6 2,487,864 - -2.1 2,487,888 + +0.0 2,487,895 + +0.7 2,487,895 - -2.1 2,487,903 - CCNA_02348 0.11 +0.2 2,487,912 - CCNA_02348 0.13 -0.7 2,487,953 - CCNA_02348 0.23 -1.3 2,487,977 + CCNA_02348 0.28 +0.3 2,487,986 + CCNA_02348 0.30 +0.8 2,488,009 - CCNA_02348 0.35 -0.6 2,488,009 - CCNA_02348 0.35 -0.4 2,488,041 + CCNA_02348 0.43 +0.9 2,488,041 + CCNA_02348 0.43 +0.3 2,488,049 - CCNA_02348 0.45 -0.2 2,488,051 + CCNA_02348 0.45 +0.2 2,488,059 - CCNA_02348 0.47 -2.0 2,488,086 - CCNA_02348 0.53 -0.5 2,488,096 + CCNA_02348 0.55 -0.5 2,488,121 - CCNA_02348 0.61 +0.2 2,488,136 - CCNA_02348 0.64 -0.7 2,488,211 + CCNA_02348 0.82 +0.2 2,488,228 - CCNA_02348 0.85 -2.3 2,488,239 + CCNA_02348 0.88 -0.2 2,488,291 + -0.2 2,488,291 + +0.5 2,488,296 + +0.2 2,488,299 - -0.5 2,488,361 + -0.2 2,488,368 - -1.0 2,488,368 - -0.5 2,488,368 - +0.5 2,488,369 - -0.8 2,488,411 - +0.4 2,488,477 + +0.1 2,488,485 - -1.7 2,488,566 + CCNA_02349 0.16 +0.3 2,488,591 - CCNA_02349 0.18 -0.5 2,488,598 + CCNA_02349 0.19 +0.4 2,488,598 + CCNA_02349 0.19 +0.5 2,488,606 - CCNA_02349 0.20 +2.1 2,488,621 - CCNA_02349 0.22 -0.9 2,488,645 - CCNA_02349 0.24 -0.1 2,488,648 + CCNA_02349 0.25 -0.8 2,488,668 + CCNA_02349 0.27 +1.1 2,488,671 - CCNA_02349 0.27 +0.7 2,488,710 - CCNA_02349 0.32 -1.2
Or see this region's nucleotide sequence