Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02333

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02331 and CCNA_02332 are separated by 135 nucleotidesCCNA_02332 and CCNA_02333 overlap by 4 nucleotidesCCNA_02333 and CCNA_02334 are separated by 117 nucleotidesCCNA_02334 and CCNA_02335 are separated by 62 nucleotides CCNA_02331: CCNA_02331 - peptidoglycan-specific endopeptidase, M23 family, at 2,472,976 to 2,473,827 _02331 CCNA_02332: CCNA_02332 - chemotaxis receiver protein cheYIII, at 2,473,963 to 2,474,481 _02332 CCNA_02333: CCNA_02333 - lipid A biosynthesis lauroyl acyltransferase, at 2,474,478 to 2,475,422 _02333 CCNA_02334: CCNA_02334 - transcriptional regulator of stalk biogenesis staR, at 2,475,540 to 2,475,935 _02334 CCNA_02335: CCNA_02335 - inositol monophosphatase family protein, at 2,475,998 to 2,476,834 _02335 Position (kb) 2474 2475 2476Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2473.514 kb on + strand, within CCNA_02331at 2473.514 kb on - strand, within CCNA_02331at 2473.588 kb on + strand, within CCNA_02331at 2473.601 kb on - strand, within CCNA_02331at 2473.627 kb on + strand, within CCNA_02331at 2473.633 kb on + strand, within CCNA_02331at 2473.635 kb on - strand, within CCNA_02331at 2473.641 kb on - strand, within CCNA_02331at 2473.714 kb on - strand, within CCNA_02331at 2473.747 kb on + strandat 2473.774 kb on + strandat 2473.781 kb on + strandat 2473.816 kb on + strandat 2473.901 kb on + strandat 2473.933 kb on - strandat 2473.955 kb on + strandat 2474.040 kb on + strand, within CCNA_02332at 2474.040 kb on + strand, within CCNA_02332at 2474.054 kb on + strand, within CCNA_02332at 2474.095 kb on + strand, within CCNA_02332at 2474.273 kb on + strand, within CCNA_02332at 2474.292 kb on - strand, within CCNA_02332at 2474.328 kb on - strand, within CCNA_02332at 2474.328 kb on - strand, within CCNA_02332at 2474.331 kb on + strand, within CCNA_02332at 2474.389 kb on - strand, within CCNA_02332at 2474.405 kb on + strand, within CCNA_02332at 2474.443 kb on + strandat 2474.514 kb on - strandat 2474.514 kb on - strandat 2474.529 kb on - strandat 2474.529 kb on - strandat 2474.539 kb on - strandat 2474.809 kb on + strand, within CCNA_02333at 2474.850 kb on - strand, within CCNA_02333at 2474.852 kb on + strand, within CCNA_02333at 2474.860 kb on - strand, within CCNA_02333at 2474.932 kb on + strand, within CCNA_02333at 2475.370 kb on + strandat 2475.418 kb on + strandat 2475.481 kb on - strandat 2475.488 kb on - strandat 2475.527 kb on - strandat 2475.565 kb on + strandat 2475.567 kb on - strandat 2475.610 kb on + strand, within CCNA_02334at 2475.618 kb on - strand, within CCNA_02334at 2475.704 kb on + strand, within CCNA_02334at 2475.716 kb on + strand, within CCNA_02334at 2475.723 kb on + strand, within CCNA_02334at 2475.738 kb on - strand, within CCNA_02334at 2475.765 kb on - strand, within CCNA_02334at 2475.769 kb on - strand, within CCNA_02334at 2475.769 kb on - strand, within CCNA_02334at 2475.769 kb on - strand, within CCNA_02334at 2475.829 kb on + strand, within CCNA_02334at 2475.829 kb on + strand, within CCNA_02334at 2475.837 kb on - strand, within CCNA_02334at 2475.847 kb on - strand, within CCNA_02334at 2475.887 kb on + strand, within CCNA_02334at 2475.938 kb on - strandat 2475.955 kb on - strandat 2475.980 kb on - strandat 2475.982 kb on + strandat 2475.982 kb on + strandat 2475.982 kb on + strandat 2475.990 kb on - strandat 2475.990 kb on - strandat 2476.084 kb on + strand, within CCNA_02335at 2476.092 kb on - strand, within CCNA_02335at 2476.092 kb on - strand, within CCNA_02335at 2476.092 kb on - strand, within CCNA_02335at 2476.092 kb on - strand, within CCNA_02335at 2476.092 kb on - strand, within CCNA_02335at 2476.092 kb on - strand, within CCNA_02335at 2476.092 kb on - strand, within CCNA_02335at 2476.095 kb on + strand, within CCNA_02335at 2476.101 kb on + strand, within CCNA_02335at 2476.121 kb on + strand, within CCNA_02335at 2476.165 kb on - strand, within CCNA_02335at 2476.179 kb on - strand, within CCNA_02335at 2476.237 kb on + strand, within CCNA_02335at 2476.341 kb on - strand, within CCNA_02335at 2476.351 kb on - strand, within CCNA_02335at 2476.376 kb on + strand, within CCNA_02335

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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2,473,514 + CCNA_02331 0.63 +0.2
2,473,514 - CCNA_02331 0.63 -0.1
2,473,588 + CCNA_02331 0.72 -0.5
2,473,601 - CCNA_02331 0.73 +0.5
2,473,627 + CCNA_02331 0.76 +0.4
2,473,633 + CCNA_02331 0.77 +1.0
2,473,635 - CCNA_02331 0.77 +0.1
2,473,641 - CCNA_02331 0.78 +0.2
2,473,714 - CCNA_02331 0.87 +0.4
2,473,747 + -1.0
2,473,774 + -0.2
2,473,781 + -0.1
2,473,816 + +0.0
2,473,901 + +0.3
2,473,933 - +2.0
2,473,955 + +1.0
2,474,040 + CCNA_02332 0.15 +0.7
2,474,040 + CCNA_02332 0.15 +0.1
2,474,054 + CCNA_02332 0.18 -0.2
2,474,095 + CCNA_02332 0.25 +0.1
2,474,273 + CCNA_02332 0.60 -1.1
2,474,292 - CCNA_02332 0.63 +0.8
2,474,328 - CCNA_02332 0.70 +0.2
2,474,328 - CCNA_02332 0.70 -0.1
2,474,331 + CCNA_02332 0.71 +0.4
2,474,389 - CCNA_02332 0.82 +1.6
2,474,405 + CCNA_02332 0.85 +3.1
2,474,443 + +0.1
2,474,514 - -0.5
2,474,514 - -0.4
2,474,529 - +0.6
2,474,529 - +0.2
2,474,539 - +0.4
2,474,809 + CCNA_02333 0.35 -0.5
2,474,850 - CCNA_02333 0.39 -0.1
2,474,852 + CCNA_02333 0.40 +0.2
2,474,860 - CCNA_02333 0.40 +0.2
2,474,932 + CCNA_02333 0.48 -0.1
2,475,370 + -1.9
2,475,418 + -0.6
2,475,481 - +0.4
2,475,488 - +0.1
2,475,527 - +0.9
2,475,565 + -0.4
2,475,567 - +0.2
2,475,610 + CCNA_02334 0.18 -0.3
2,475,618 - CCNA_02334 0.20 +0.2
2,475,704 + CCNA_02334 0.41 -0.3
2,475,716 + CCNA_02334 0.44 +0.8
2,475,723 + CCNA_02334 0.46 +0.1
2,475,738 - CCNA_02334 0.50 +0.3
2,475,765 - CCNA_02334 0.57 +1.2
2,475,769 - CCNA_02334 0.58 -0.8
2,475,769 - CCNA_02334 0.58 -0.2
2,475,769 - CCNA_02334 0.58 -1.5
2,475,829 + CCNA_02334 0.73 +0.5
2,475,829 + CCNA_02334 0.73 -0.1
2,475,837 - CCNA_02334 0.75 -0.6
2,475,847 - CCNA_02334 0.78 +0.1
2,475,887 + CCNA_02334 0.88 +0.1
2,475,938 - -0.3
2,475,955 - -0.6
2,475,980 - +0.4
2,475,982 + +0.3
2,475,982 + +0.4
2,475,982 + +0.2
2,475,990 - -0.2
2,475,990 - -0.2
2,476,084 + CCNA_02335 0.10 +0.1
2,476,092 - CCNA_02335 0.11 +0.5
2,476,092 - CCNA_02335 0.11 -0.4
2,476,092 - CCNA_02335 0.11 +1.0
2,476,092 - CCNA_02335 0.11 +0.0
2,476,092 - CCNA_02335 0.11 -0.1
2,476,092 - CCNA_02335 0.11 +1.5
2,476,092 - CCNA_02335 0.11 +0.0
2,476,095 + CCNA_02335 0.12 -0.3
2,476,101 + CCNA_02335 0.12 +0.0
2,476,121 + CCNA_02335 0.15 +0.9
2,476,165 - CCNA_02335 0.20 -1.2
2,476,179 - CCNA_02335 0.22 -0.6
2,476,237 + CCNA_02335 0.29 +0.1
2,476,341 - CCNA_02335 0.41 +0.8
2,476,351 - CCNA_02335 0.42 +0.7
2,476,376 + CCNA_02335 0.45 +0.4

Or see this region's nucleotide sequence