Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02330

Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02329 and CCNA_02330 are separated by 27 nucleotidesCCNA_02330 and CCNA_02331 overlap by 16 nucleotidesCCNA_02331 and CCNA_02332 are separated by 135 nucleotides CCNA_02329: CCNA_02329 - exodeoxyribonuclease VII large subunit, at 2,471,231 to 2,472,748 _02329 CCNA_02330: CCNA_02330 - hypothetical protein, at 2,472,776 to 2,472,991 _02330 CCNA_02331: CCNA_02331 - peptidoglycan-specific endopeptidase, M23 family, at 2,472,976 to 2,473,827 _02331 CCNA_02332: CCNA_02332 - chemotaxis receiver protein cheYIII, at 2,473,963 to 2,474,481 _02332 Position (kb) 2472 2473Strain fitness (log2 ratio) -1 0 1 2at 2471.921 kb on + strand, within CCNA_02329at 2471.974 kb on - strand, within CCNA_02329at 2472.723 kb on + strandat 2472.736 kb on - strandat 2472.826 kb on + strand, within CCNA_02330at 2472.853 kb on + strand, within CCNA_02330at 2472.867 kb on + strand, within CCNA_02330at 2472.872 kb on + strand, within CCNA_02330at 2472.935 kb on - strand, within CCNA_02330at 2472.951 kb on - strand, within CCNA_02330at 2473.003 kb on + strandat 2473.011 kb on - strandat 2473.011 kb on - strandat 2473.030 kb on + strandat 2473.043 kb on - strandat 2473.113 kb on - strand, within CCNA_02331at 2473.127 kb on + strand, within CCNA_02331at 2473.145 kb on + strand, within CCNA_02331at 2473.227 kb on - strand, within CCNA_02331at 2473.315 kb on + strand, within CCNA_02331at 2473.339 kb on + strand, within CCNA_02331at 2473.467 kb on - strand, within CCNA_02331at 2473.514 kb on + strand, within CCNA_02331at 2473.514 kb on - strand, within CCNA_02331at 2473.588 kb on + strand, within CCNA_02331at 2473.601 kb on - strand, within CCNA_02331at 2473.627 kb on + strand, within CCNA_02331at 2473.633 kb on + strand, within CCNA_02331at 2473.635 kb on - strand, within CCNA_02331at 2473.641 kb on - strand, within CCNA_02331at 2473.714 kb on - strand, within CCNA_02331at 2473.747 kb on + strandat 2473.774 kb on + strandat 2473.781 kb on + strandat 2473.816 kb on + strandat 2473.901 kb on + strandat 2473.933 kb on - strandat 2473.955 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol%
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2,471,921 + CCNA_02329 0.45 +0.7
2,471,974 - CCNA_02329 0.49 +0.2
2,472,723 + +0.4
2,472,736 - +0.1
2,472,826 + CCNA_02330 0.23 -0.3
2,472,853 + CCNA_02330 0.36 +0.1
2,472,867 + CCNA_02330 0.42 +0.1
2,472,872 + CCNA_02330 0.44 +0.0
2,472,935 - CCNA_02330 0.74 +0.2
2,472,951 - CCNA_02330 0.81 -0.6
2,473,003 + +0.5
2,473,011 - -0.0
2,473,011 - +0.2
2,473,030 + +0.0
2,473,043 - -0.4
2,473,113 - CCNA_02331 0.16 -0.8
2,473,127 + CCNA_02331 0.18 +0.3
2,473,145 + CCNA_02331 0.20 +0.3
2,473,227 - CCNA_02331 0.29 +0.2
2,473,315 + CCNA_02331 0.40 +0.5
2,473,339 + CCNA_02331 0.43 +0.5
2,473,467 - CCNA_02331 0.58 -0.7
2,473,514 + CCNA_02331 0.63 +0.2
2,473,514 - CCNA_02331 0.63 -0.1
2,473,588 + CCNA_02331 0.72 -0.5
2,473,601 - CCNA_02331 0.73 +0.5
2,473,627 + CCNA_02331 0.76 +0.4
2,473,633 + CCNA_02331 0.77 +1.0
2,473,635 - CCNA_02331 0.77 +0.1
2,473,641 - CCNA_02331 0.78 +0.2
2,473,714 - CCNA_02331 0.87 +0.4
2,473,747 + -1.0
2,473,774 + -0.2
2,473,781 + -0.1
2,473,816 + +0.0
2,473,901 + +0.3
2,473,933 - +2.0
2,473,955 + +1.0

Or see this region's nucleotide sequence