Experiment: PYE with Dimethyl Sulfoxide 0.4 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02215 and CCNA_02216 are separated by 6 nucleotides CCNA_02216 and CCNA_02217 are separated by 121 nucleotides CCNA_02217 and CCNA_02218 are separated by 98 nucleotides
CCNA_02215: CCNA_02215 - acyl-CoA dehydrogenase, at 2,362,451 to 2,363,662
_02215
CCNA_02216: CCNA_02216 - ABM family monooxygenase, at 2,363,669 to 2,363,959
_02216
CCNA_02217: CCNA_02217 - hypothetical protein, at 2,364,081 to 2,364,383
_02217
CCNA_02218: CCNA_02218 - DnaJ-like protein djlA, at 2,364,482 to 2,365,177
_02218
Position (kb)
2364
2365 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2363.178 kb on + strand, within CCNA_02215 at 2363.185 kb on + strand, within CCNA_02215 at 2363.186 kb on - strand, within CCNA_02215 at 2363.251 kb on - strand, within CCNA_02215 at 2363.251 kb on - strand, within CCNA_02215 at 2363.251 kb on - strand, within CCNA_02215 at 2363.257 kb on - strand, within CCNA_02215 at 2363.279 kb on - strand, within CCNA_02215 at 2363.286 kb on + strand, within CCNA_02215 at 2363.293 kb on + strand, within CCNA_02215 at 2363.318 kb on + strand, within CCNA_02215 at 2363.325 kb on - strand, within CCNA_02215 at 2363.379 kb on - strand, within CCNA_02215 at 2363.413 kb on - strand, within CCNA_02215 at 2363.418 kb on - strand, within CCNA_02215 at 2363.453 kb on - strand, within CCNA_02215 at 2363.488 kb on - strand, within CCNA_02215 at 2363.530 kb on + strand, within CCNA_02215 at 2363.561 kb on - strand at 2363.576 kb on + strand at 2363.630 kb on + strand at 2363.667 kb on + strand at 2363.669 kb on + strand at 2363.669 kb on + strand at 2363.669 kb on + strand at 2363.674 kb on + strand at 2363.677 kb on - strand at 2363.720 kb on + strand, within CCNA_02216 at 2363.722 kb on - strand, within CCNA_02216 at 2363.739 kb on + strand, within CCNA_02216 at 2363.739 kb on + strand, within CCNA_02216 at 2363.747 kb on - strand, within CCNA_02216 at 2363.752 kb on - strand, within CCNA_02216 at 2363.801 kb on - strand, within CCNA_02216 at 2363.803 kb on - strand, within CCNA_02216 at 2363.807 kb on + strand, within CCNA_02216 at 2363.823 kb on + strand, within CCNA_02216 at 2363.850 kb on + strand, within CCNA_02216 at 2363.876 kb on - strand, within CCNA_02216 at 2363.876 kb on - strand, within CCNA_02216 at 2363.909 kb on - strand, within CCNA_02216 at 2364.012 kb on + strand at 2364.020 kb on - strand at 2364.020 kb on - strand at 2364.079 kb on + strand at 2364.236 kb on + strand, within CCNA_02217 at 2364.263 kb on - strand, within CCNA_02217 at 2364.267 kb on + strand, within CCNA_02217 at 2364.303 kb on + strand, within CCNA_02217 at 2364.442 kb on + strand at 2364.451 kb on + strand at 2364.479 kb on + strand at 2364.479 kb on + strand at 2364.487 kb on - strand at 2364.487 kb on - strand at 2364.563 kb on - strand, within CCNA_02218 at 2364.563 kb on - strand, within CCNA_02218 at 2364.619 kb on - strand, within CCNA_02218 at 2364.621 kb on + strand, within CCNA_02218 at 2364.629 kb on - strand, within CCNA_02218 at 2364.631 kb on + strand, within CCNA_02218 at 2364.667 kb on - strand, within CCNA_02218 at 2364.691 kb on - strand, within CCNA_02218 at 2364.781 kb on + strand, within CCNA_02218 at 2364.803 kb on - strand, within CCNA_02218 at 2364.831 kb on + strand, within CCNA_02218 at 2364.839 kb on - strand, within CCNA_02218 at 2364.873 kb on - strand, within CCNA_02218 at 2364.873 kb on - strand, within CCNA_02218 at 2365.172 kb on + strand at 2365.172 kb on + strand at 2365.173 kb on + strand at 2365.184 kb on + strand at 2365.200 kb on + strand at 2365.200 kb on + strand at 2365.213 kb on - strand at 2365.227 kb on + strand at 2365.239 kb on - strand at 2365.287 kb on + strand at 2365.296 kb on + strand at 2365.334 kb on + strand at 2365.344 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 0.4 vol% remove 2,363,178 + CCNA_02215 0.60 -1.4 2,363,185 + CCNA_02215 0.61 -0.7 2,363,186 - CCNA_02215 0.61 -0.1 2,363,251 - CCNA_02215 0.66 -0.4 2,363,251 - CCNA_02215 0.66 -0.3 2,363,251 - CCNA_02215 0.66 +0.1 2,363,257 - CCNA_02215 0.67 +0.6 2,363,279 - CCNA_02215 0.68 -1.7 2,363,286 + CCNA_02215 0.69 -0.6 2,363,293 + CCNA_02215 0.69 -0.1 2,363,318 + CCNA_02215 0.72 -0.6 2,363,325 - CCNA_02215 0.72 +0.3 2,363,379 - CCNA_02215 0.77 +0.0 2,363,413 - CCNA_02215 0.79 -1.8 2,363,418 - CCNA_02215 0.80 -0.3 2,363,453 - CCNA_02215 0.83 +0.1 2,363,488 - CCNA_02215 0.86 -0.7 2,363,530 + CCNA_02215 0.89 +0.5 2,363,561 - +1.2 2,363,576 + -0.4 2,363,630 + +0.2 2,363,667 + -1.1 2,363,669 + -1.1 2,363,669 + -0.4 2,363,669 + +0.6 2,363,674 + +0.3 2,363,677 - +1.5 2,363,720 + CCNA_02216 0.18 -0.3 2,363,722 - CCNA_02216 0.18 -0.1 2,363,739 + CCNA_02216 0.24 -1.1 2,363,739 + CCNA_02216 0.24 -2.0 2,363,747 - CCNA_02216 0.27 -0.0 2,363,752 - CCNA_02216 0.29 -0.1 2,363,801 - CCNA_02216 0.45 +0.7 2,363,803 - CCNA_02216 0.46 -1.9 2,363,807 + CCNA_02216 0.47 -0.4 2,363,823 + CCNA_02216 0.53 -0.7 2,363,850 + CCNA_02216 0.62 +0.4 2,363,876 - CCNA_02216 0.71 +0.3 2,363,876 - CCNA_02216 0.71 +0.3 2,363,909 - CCNA_02216 0.82 -0.0 2,364,012 + -0.5 2,364,020 - +0.6 2,364,020 - +0.5 2,364,079 + -0.8 2,364,236 + CCNA_02217 0.51 -0.9 2,364,263 - CCNA_02217 0.60 -0.1 2,364,267 + CCNA_02217 0.61 -1.4 2,364,303 + CCNA_02217 0.73 -2.6 2,364,442 + -0.5 2,364,451 + +0.9 2,364,479 + -0.1 2,364,479 + +0.1 2,364,487 - -0.2 2,364,487 - +0.3 2,364,563 - CCNA_02218 0.12 +0.2 2,364,563 - CCNA_02218 0.12 -0.1 2,364,619 - CCNA_02218 0.20 -1.0 2,364,621 + CCNA_02218 0.20 -2.7 2,364,629 - CCNA_02218 0.21 -1.0 2,364,631 + CCNA_02218 0.21 +0.2 2,364,667 - CCNA_02218 0.27 +0.4 2,364,691 - CCNA_02218 0.30 -0.2 2,364,781 + CCNA_02218 0.43 -1.7 2,364,803 - CCNA_02218 0.46 +0.7 2,364,831 + CCNA_02218 0.50 -2.6 2,364,839 - CCNA_02218 0.51 +0.9 2,364,873 - CCNA_02218 0.56 -2.7 2,364,873 - CCNA_02218 0.56 -0.8 2,365,172 + -0.7 2,365,172 + -0.8 2,365,173 + -0.7 2,365,184 + +0.8 2,365,200 + +1.8 2,365,200 + -0.0 2,365,213 - +0.1 2,365,227 + -1.3 2,365,239 - -1.4 2,365,287 + -1.4 2,365,296 + -0.8 2,365,334 + -0.1 2,365,344 + -0.2
Or see this region's nucleotide sequence